DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004655 rno-miR-345-3p 317385 Fus agAGGUCUGGGGAUCAAGUCCc | :| ||:: | |||||| uuUGUAAACUUACAAUUCAGGa 2 21 57 78 [rn4:1:187264604-187264625:+] 0.5933 124 6 -12.24 -0.1519 MIMAT0004717 rno-miR-29b-2* 317385 Fus gauUCGGUGGUACACUUUGGUc :|:: |||| |||||| ucuGGUUCCCAUUAAAAACCAu 2 20 164 185 [rn4:1:187264711-187264732:+] 0.5933 127 6 -15.19 -0.3283 MIMAT0004740 rno-miR-218* 317385 Fus gcgccacgaacugucUUGGUAc |||||| cugguucccauuaaaAACCAUu 2 8 165 186 [rn4:1:187264712-187264733:+] 0.5933 120 6 -9.61 -0.3742 MIMAT0005446 rno-miR-219-2-3p 317385 Fus ugucuACAGGUCGGUGUUAAGa ||| | ::||||||| uauuuUGUAAACUUACAAUUCa 2 18 54 75 [rn4:1:187264601-187264622:+] 0.5933 153 7 -10.59 -1.1699 MIMAT0003162 rno-miR-1* 317385 Fus ccCAUGUAUUUCUUCAUACACg ||: : || | ||||||| ggGUGGGCAACG--GUAUGUGu 2 21 102 121 [rn4:1:187264649-187264668:+] 0.5933 145 7 -16.64 -0.2938 MIMAT0003204 rno-miR-409-5p 317385 Fus guuucaacgagccCAUUGGa |||||| gacuaccguaauuGUAACCa 2 8 140 159 [rn4:1:187264687-187264706:+] 0.5933 120 6 -7.31 -0.1055 MIMAT0005286 rno-miR-878 317385 Fus agaUGGGUCAUACCAC-AGUACg |::||| || || ||||| acaAUUCAGGAU--UGCUCAUGg 2 20 68 88 [rn4:1:187264615-187264635:+] 0.5933 120 0 -12.74 -1.1522 MIMAT0012844 rno-miR-665 317385 Fus ucccuggaGUCGGAGGACca | | |||||| -------cCUGACUCCUGaa 3 13 1 13 [rn4:1:187264548-187264560:+] 0.7492 124 0 -12.09 -0.1670 MIMAT0012848 rno-miR-294 317385 Fus ucuaucccGGA-GGUAAAACuc |:| ::|||||| guguuaccCUUGUUAUUUUGua 3 14 41 62 [rn4:1:187264588-187264609:+] 0.5933 124 0 -8.52 -0.1414 MIMAT0012852 rno-miR-667 317385 Fus gaACCCG-ACCCACCGUC-CACAGu || |: || ||| || ||||| uaUGUGUGUGUGUGUGAGUGUGUCa 2 22 115 139 [rn4:1:187264662-187264686:+] 0.5933 124 0 -15.99 -0.8273 MIMAT0000589 rno-miR-342-3p 317385 Fus ugcCCACGC-UAAAGACACACUCu ||| :| :| | |||||||| aacGGUAUGUGUGUGUGUGUGAGu 2 21 110 133 [rn4:1:187264657-187264680:+] 0.5933 159 7 -25.87 -0.6320 MIMAT0000611 rno-miR-135b 317385 Fus aguguauccuUACUUUUCGGUAu || |||| |||| ucugguucccAUUAAAAACCAUu 2 14 164 186 [rn4:1:187264711-187264733:+] 0.5933 125 0 -5.78 -0.1174 MIMAT0000841 rno-miR-135a 317385 Fus aguguauccuUAUUUUUCGGUAu || |||| |||| ucugguucccAUUAAAAACCAUu 2 14 164 186 [rn4:1:187264711-187264733:+] 0.5933 125 0 -6.68 -0.1174 MIMAT0000846 rno-miR-141 317385 Fus gguaGAAAUGGUCUGUCACAAu || |||| ||||||| cuucCUGUACC---CAGUGUUa 2 19 28 46 [rn4:1:187264575-187264593:+] 0.5933 150 7 -15.92 -0.5370 MIMAT0000874 rno-miR-200a 317385 Fus uguAGCA-AUGGUCUGUCACAAu || | |||| ||||||| ucuUCCUGUACC---CAGUGUUa 2 20 27 46 [rn4:1:187264574-187264593:+] 0.5933 146 7 -14.56 -0.5370 MIMAT0003123 rno-miR-377 317385 Fus ggUUUUCA---ACGGAAACACACUa || :|| ||: | ||||||| gcAACGGUAUGUGUGUGUGUGUGAg 2 21 108 132 [rn4:1:187264655-187264679:+] 0.5933 151 7 -16.19 -0.3721 MIMAT0003199 rno-miR-381 317385 Fus cucUCG-AACGGGAAC-AUAu ||: || |||||| ||| cccAGUGUUACCCUUGUUAUu 2 17 37 57 [rn4:1:187264584-187264604:+] 0.5933 123 0 -13.14 -0.8153

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G031682 Fus Rattus norvegicus 317385

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Fus; rCG_39872 rno-miR-1* 112 131 CCCAUGUAUUUCUUCAUACACG- ||||::|: ||:||||: CGGUAUGUGU----GUGUGUGUG Fus; rCG_39872 rno-miR-125b 65 91 -AGUGUUCAAUCCCA--GAGUCCCU- |:|||| ||| |||| ||| CUUACAAUUCAGGAUUGCUCAUGGAU Fus; rCG_39872 rno-miR-129* 79 111 UACGA----------AAAACCCCAUU-CCCGAA |||| |||||||| |||| UUGCUCAUGGAUAUUUUUUGGGGGGGUGGGCA- Fus; rCG_39872 rno-miR-140 141 162 -GAUGGUAUCC-CAUUUUGGUGA |||||:|| ||| ||||: ACUACCGUAAUUGUA--ACCAUA Fus; rCG_39872 rno-miR-141 22 48 GGU--AGAA----AUGGUCUGUCACAAU- || |||| |||| |||||||| ACAGCUCUUCCUGUACC---CAGUGUUAC Fus; rCG_39872 rno-miR-150 85 110 GUGACC-------AUGUUCCCAACCCUCU ||| | ::||| |||| --AUGGAUAUUUUUUGGGGGGGUGGGC-- Fus; rCG_39872 rno-miR-181a 80 108 -UGAGUGGCUGUCG-----CAACUUACAA :||||: ||:| | | || UGCUCAUGGAUAUUUUUUGGGGGGGUGG- Fus; rCG_39872 rno-miR-189 87 112 UGACUAUAG----UCGAGUCAUCCGUG |||||: :| :||:|||| --GGAUAUUUUUUGGGGGGGUGGGCAA Fus; rCG_39872 rno-miR-200a 24 48 -UGU--AGCA-AUGGUCUGUCACAAU- :| || |||| |||||||| AGCUCUUCCUGUACC---CAGUGUUAC Fus; rCG_39872 rno-miR-298 18 37 CCUUCUUGUCGGGAGGAGACGG :|||||||:||:| |||: --UGGAACAGCUCUUC-CUGUA Fus; rCG_39872 rno-miR-324-3p 72 109 -GGUCGUCGUGG-------------ACCCCGUCACC- :||| | :|: ||||| :|||| UUCAGGAUUGCUCAUGGAUAUUUUUUGGGGGGGUGGG Fus; rCG_39872 rno-miR-324-5p 67 110 -UGU--GGUU---ACGGGA-------------UCCCCUACGC ||| :||: |||:| :||||:|| | UACAAUUCAGGAUUGCUCAUGGAUAUUUUUUGGGGGGGUGGGC Fus; rCG_39872 rno-miR-336 75 109 -UCUG------AUCUAU-----ACCUUCCCACU- :||: |:|||| ||| |||||: AGGAUUGCUCAUGGAUAUUUUUUGGGGGGGUGGG Fus; rCG_39872 rno-miR-342 98 134 -CUGCCCACGC---------UAA--AGACACACUCU |: ||||| | :| | |||||||| GGGGGGGUGGGCAACGGUAUGUGUGUGUGUGUGAGU Fus; rCG_39872 rno-miR-343 72 105 -AGACC---CGUGUGCCU--------CCCUCU- || || || ||:||| |||:|: UUCAGGAUUGCUCAUGGAUAUUUUUUGGGGGGG Fus; rCG_39872 rno-miR-350 96 134 CACUUUCACAUACCCG-------------AA--ACACUU- || :| :||||| | |||||: UUGGGGGG--GUGGGCAACGGUAUGUGUGUGUGUGUGAGU Fus; rCG_39872 rno-miR-351 80 104 GUCCGAGUUUCCC--GAGGAGUCCCU- ||||| || :|::|::|||: --UGCUCAU-GGAUAUUUUUUGGGGGG Fus; rCG_39872 rno-miR-365 86 107 UAUUCCUA---AAAAUCCCCGUAAU |||| ||||:|||| :| ---UGGAUAUUUUUUGGGGGGGUG- Fus; rCG_39872 rno-miR-377 108 133 GGUUUUCA-ACGGAA--ACACACUA ||| :|| ||: | ||||||| GCAACGGUAUGUGUGUGUGUGUGAG Fus; rCG_39872 rno-miR-409-3p 97 115 -CCCCAAGUGGCUCGUUGUAA |||| : :|:|||||: UGGGGG--GGUGGGCAACGG- Fus; rCG_39872 rno-miR-422b 1 21 CGGAAGACUGAGG--UUCAGGUCA |||||||| ||||:| | ----CCUGACUCCUGAAGUUCUGG Fus; rCG_39872 rno-miR-483 73 109 UGUUCUGC------CCUCC------CCUCCUCACU- ||:||: ||| ||:||:|||: UCAGGAUUGCUCAUGGAUAUUUUUUGGGGGGGUGGG Fus; rCG_39872 rno-miR-93 5 32 -GAUGGAC-----GUGCUUGUCGUGAAAC || |||| | ||||||| ||| ACU-CCUGAAGUUCUGGAACAGCUCUUC- Fus; rCG_39872 rno-miR-1* 102 121 CCCAUGUAUUUCUUCAUACACg ||||: : || | ||||||| GGGTGGGCAACG--GTATGTGt Fus; rCG_39872 rno-miR-125b 66 89 AGUGUUCAAUCCCA--GAGUCCCU |:|||| | ||| | |||| ||| TTACAATTCAGGATTGCTCATGGA Fus; rCG_39872 rno-miR-129* 89 111 UACGAAAAA-CCCCAUUCCCGaa || :||||| |||| : |||| ATATTTTTTGGGGGGGTGGGCaa Fus; rCG_39872 rno-miR-140 154 186 gaUGGUAU-----CCCA-------UUUUGGUGA |||||| || | |||||||:| taACCATATCTCTGGTTCCCATTAAAAACCATT Fus; rCG_39872 rno-miR-141 22 46 gGUAGAAAUGGUC-U--GUCACAAU || || | || | | |||||||| aCAGCTCTTCCTGTACCCAGTGTTA Fus; rCG_39872 rno-miR-150 84 103 GUGACCAUGUUCCCAACCCUCu || ||| |:| |||||:| CA-TGG-ATATTTTTTGGGGGg Fus; rCG_39872 rno-miR-181a 106 136 ugaGUGGCUGU-------CGCA-ACUUACAa || ||::| |:|| |||:||| gggCAACGGTATGTGTGTGTGTGTGAGTGTg Fus; rCG_39872 rno-miR-189 85 111 UGACUAU----AGUCGAGUCAUCCGUg |: |||| |::| :||:|||| ATGGATATTTTTTGGGGGGGTGGGCAa Fus; rCG_39872 rno-miR-298 16 38 ccuuCUUGUCG-GGAGGAGACGG ||||||| |:|||| | || tctgGAACAGCTCTTCCTGTACC Fus; rCG_39872 rno-miR-324-3p 86 107 ggucgucguggACCCCGUCACC ||||| :|||| tggatatttttTGGGGGGGTGG Fus; rCG_39872 rno-miR-324-5p 83 108 uGUGGUUACGGGA---UCCCCUACgc ||: :|| :::| :||||:|| tCATGGATATTTTTTGGGGGGGTGgg Fus; rCG_39872 rno-miR-336 82 107 ucugAUCUAU-----ACCUUCCCACu |:|||| |||::||||| ctcaTGGATATTTTTTGGGGGGGTGg Fus; rCG_39872 rno-miR-342 110 133 cUGCC-CACGCUAAAGACACACUCu |||| ||:| | | |||||||| aACGGTATGTG-TGTGTGTGTGAGt Fus; rCG_39872 rno-miR-343 73 105 AGACC---CGUGUGC----------CUCCCUCu || || || ||:| |:|||:| TCAGGATTGCTCATGGATATTTTTTGGGGGGGt Fus; rCG_39872 rno-miR-350 106 132 CACUUUCACAUACCCG---AAACACUu | | || ||||| |: | ||||| GGGCAACGGTATGTGTGTGTGTGTGAg Fus; rCG_39872 rno-miR-351 63 89 guccgaGUU---UCCCGAGGAGUCCCU ||| ||| :| |||| ||| aacttaCAATTCAGGATTGCTCATGGA Fus; rCG_39872 rno-miR-365 83 113 uaUUCCU---AAAAAUC------CCCGUaau | ||| |||||:| ||||| tcATGGATATTTTTTGGGGGGGTGGGCAacg Fus; rCG_39872 rno-miR-377 108 132 gGUUUUCA---ACGGAAACACACUa ||| :|| ||: | ||||||| gCAACGGTATGTGTGTGTGTGTGAg Fus; rCG_39872 rno-miR-409-3p 101 115 CCCCAAGUGGCUCGUUGuaa ||||| |:||||| GGGGT-----GGGCAACggt Fus; rCG_39872 rno-miR-483 85 107 uguucugcccuccCCUCCUCACu ||:||:||| atggatattttttGGGGGGGTGg Fus; rCG_39872 rno-miR-93 6 32 GAUGGACGU---G--CUUGUCGUGAAac || |||| | | ||||||| ||| CT-CCTGAAGTTCTGGAACAGCTCTTcc Fus; rCG_39872 rno-miR-1* 114 121 -----------------------CCCAUGUAUUUCUUCAUACACG ||||: : || :|||||||: UUGCUCAUGGAUAUUUUUUGGGGGGGUGGGCAAC--GGUAUGUGUG Fus; rCG_39872 rno-miR-141 39 46 ------------------------GGUAGAAAUGGUCUGUCACAAU |: || |||| |||||||| GACUCCUGAAGUUCUGGAACAGCUCUUCCUGUACC---CAGUGUUAC Fus; rCG_39872 rno-miR-200a 39 46 ---------------------UGU--AGCA-AUGGUCUGUCACAAU :| || |||| |||||||| GACUCCUGAAGUUCUGGAACAGCUCUUCCUGUACC---CAGUGUUAC Fus; rCG_39872 rno-miR-342 126 133 --------CUGCCCACGCUAA-----------AGACACACUCU |: ||||| | | |||||||| AUUUUUUGGGGGGGUGGGCAACGGUAUGUGUGUGUGUGUGAGU Fus; rCG_39872 rno-miR-377 125 132 G------------------GUUUUCA-ACGGAA--ACACACUA ||| :|| ||: | ||||||| UAUUUUUUGGGGGGGUGGGCAACGGUAUGUGUGUGUGUGUGAG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Fus RAID00248381 rno-miR-135b-5p miRNA MIMAT0000611 Fus mRNA 317385 Prediction 0.1828 Fus RAID00567376 rno-miR-135a-5p miRNA MIMAT0000841 Fus mRNA 317385 Prediction 0.1828 Fus RAID00743459 rno-miR-200a-3p miRNA MIMAT0000874 Fus mRNA 317385 Prediction 0.2202 Fus RAID00817763 rno-miR-141-3p miRNA MIMAT0000846 Fus mRNA 317385 Prediction 0.2202 Fus RAID02091468 rno-miR-381-3p miRNA MIMAT0003199 Fus mRNA 317385 Prediction 0.1828 Fus RAID02257995 rno-miR-377-3p miRNA MIMAT0003123 Fus mRNA 317385 Prediction 0.1828 Fus RAID02854502 rno-miR-219a-2-3p miRNA MIMAT0005446 Fus mRNA 317385 Prediction 0.1828 Fus RAID03328346 rno-miR-342-3p miRNA MIMAT0000589 Fus mRNA 317385 Prediction 0.1828 Fus RAID03775257 rno-miR-218b miRNA MIMAT0017838 Fus mRNA 317385 Prediction 0.1828