DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ing4; rCG_29756 rno-let-7a 383 408 -UUGA--UAUGUUGGAUGAUGGAGU |||| :|| :|| |||:|||: GAACUAGGUAGGACAGACUGCCUUC Ing4; rCG_29756 rno-let-7c 383 408 -UUGG--UAUGUUGGAUGAUGGAGU |||: :|| :|| |||:|||: GAACUAGGUAGGACAGACUGCCUUC Ing4; rCG_29756 rno-miR-1 637 657 AUGUGUGA-AGAAAUGUAAGGU :||:| |:|||:|||||: --AGCAUUCUUUUUGCAUUCUC Ing4; rCG_29756 rno-miR-103 488 511 AGUAUCGGGACAUGUUACGACGA- :||:|||| : ||| ||||| CUAUGGCCCGG-GGAAUUCUGCUG Ing4; rCG_29756 rno-miR-107 489 511 ACUAUCGGGACAUGUUACGACGA- ||:|||| : ||| ||||| -UAUGGCCCGG-GGAAUUCUGCUG Ing4; rCG_29756 rno-miR-122a 762 811 -UGUUUGUGGU-------------AACA-----------GUGUGAGGU :| ::||:|: |||| |:|:||||: UGCCGGCAUCGGGGACUCAGAACUUUGUAAUUACGAGUACGCGCUCCGC Ing4; rCG_29756 rno-miR-125a 75 98 -GUGUCCAAUUUCCCAGAGUCCCU- | :|| ::||||| |||||| GCUGGGGAU-GGGGGUC-CAGGGAG Ing4; rCG_29756 rno-miR-125b 75 98 AGUGUUCAA-UCCCAGAGUCCCU- | ::| :||||| |||||| GCUGGGGAUGGGGGUC-CAGGGAG Ing4; rCG_29756 rno-miR-127 68 93 UCGGUU-CGAGUCUG---CCUAGGCU ||| ||| :|: ||:||| UGCCUGUGCUGGGGAUGGGGGUCCA- Ing4; rCG_29756 rno-miR-128a 264 284 UUUUCUCUGGCCAAGUGACACU :::|||: ||| :||||| UGGGGAGGUUGGU--GCUGUGU Ing4; rCG_29756 rno-miR-128b 264 284 CUUUCUCUGGCCAAGUGACACU :::|||: ||| :||||| UGGGGAGGUUGGU--GCUGUGU Ing4; rCG_29756 rno-miR-133a 74 95 UGUCGACCAACUUCCCCUGGUU- ||||| :|||| |||: --UGCUGGGGAUGGGGGUCCAGG Ing4; rCG_29756 rno-miR-133b 74 95 AUCGACCAACUUCCCCUGGUU- ||||| :|||| |||: -UGCUGGGGAUGGGGGUCCAGG Ing4; rCG_29756 rno-miR-140* 725 765 -ACAGG-CACCA----------AGAUG-GGACA--CCAU- ||||| ||||| ||| | |||| |||: UUGUCCUGUGGUAUCCUCAGCUUCUCCACCUGGAGGGUGC Ing4; rCG_29756 rno-miR-142-3p 88 113 -AGGUAUUUCAUCCUUUGUGAUGU- |||| ::|| ||::||| |:|| GUCCAGGGAGAUGGGGACAGUGCAG Ing4; rCG_29756 rno-miR-143 98 124 -ACUCGAUGUCACGA------AGUAGAGU ||:| ||||||| ||||| AUGGGG-ACAGUGCAGUACCGUCAUCC-- Ing4; rCG_29756 rno-miR-148b 56 81 -UGUUUCAAGACACU-ACGUGACU- |||:|| ||| ||::|||: GACAGAGAGGGGUGCCUGUGCUGGG Ing4; rCG_29756 rno-miR-150 74 100 GUGACCA-UGUUCCCAA--CCCUCU- :|||| |: |||| |||||| UGCUGGGGAUGGGGGUCCAGGGAGAU Ing4; rCG_29756 rno-miR-151* 394 421 AUGAUCUGAC-------ACUCGAGGAGCU || |||||| || ||||:|| GAC-AGACUGCCUUCUCUGUGCUCUUCC- Ing4; rCG_29756 rno-miR-184 710 732 -UGGGAAUAGUCAAGAGGCAGGU |||| :| ||| |||| AACCCAAAAUGG-UCUUUGUCCU Ing4; rCG_29756 rno-miR-185 397 431 CUUGACGGA---------------AAGAGAGGU- :||||||| ||:|||||| AGACUGCCUUCUCUGUGCUCUUCCUUUUCUCCAU Ing4; rCG_29756 rno-miR-187 680 709 -GCCG-ACG-------UUGUGUUCUGUGCU :||| ||| |: ||||||||: AUGGCUUGCCAGAAAUAGGACAAGACAUA- Ing4; rCG_29756 rno-miR-189 328 349 UGACUAUAGUCGAGUCAUCCGUG- ||: |||: |||:||||| -GUGGG--CAGUGGAGUGGGCACU Ing4; rCG_29756 rno-miR-192 432 452 -CCGA-CAGUUAAGUAUCCAGUC || ||| ||| ||||||| GGGAGGGUC--UUC-UAGGUCAU Ing4; rCG_29756 rno-miR-193 379 400 GACCC-UGAAACAUCCGGUCAA |||| ||| ||||| ||| UUGGGAACUAGGUAGGACAGA- Ing4; rCG_29756 rno-miR-196b 383 407 GGUUGUU--GUCCU--UUGAUGGAU ||| :|||| :|||:||| -GAACUAGGUAGGACAGACUGCCUU Ing4; rCG_29756 rno-miR-207 662 686 UUCCCUCCUCUCGGUCCUCU--UCG- ||| ||||| ||||||: :|| --UGGAUGAGAGGCAGGAGGAUGGCU Ing4; rCG_29756 rno-miR-20b* 143 160 GUCUUCACGAGUGUGACGUCA :||||| | :||||| ---CGGUGCUGAGGCUGCAU- Ing4; rCG_29756 rno-miR-211 64 99 -UCCGU--------UUCCUACUGUU---UCCCUU- :||:: ::|||||: :: |||||: GGGGUGCCUGUGCUGGGGAUGGGGGUCCAGGGAGA Ing4; rCG_29756 rno-miR-214 39 80 -GAC-GGACA-GA---------------CACGGA--CGACA ||| |||| || |||||| |||| CCUGACCUGGGCUAGUGGACAGAGAGGGGUGCCUGUGCUGG Ing4; rCG_29756 rno-miR-215 437 453 CAGACAGUUUAGUAUCCAGUA- ||| || |||||||| ---GGUCU--UC-UAGGUCAUU Ing4; rCG_29756 rno-miR-217 87 116 -UAGGUCAGUCAAGGACU---ACGUCAU- :||||| || || ||||||| GGUCCAGGGAGAUGGGGACAGUGCAGUAC Ing4; rCG_29756 rno-miR-222 534 575 -CUCUGGGUC-AUCGG-----------UCUA-----CAUCGA ||| ||||| ||||: :|| ||||: GGAG-CCCAGAUAGCUCACAUGUAAAGGGAGUCGGGGUAGUA Ing4; rCG_29756 rno-miR-24 29 54 -GACA-AGGACGACUUGACUCGGU- ||| ||| |||| |||:||:| UCUGAAUCCCCCUGACCUGGGCUAG Ing4; rCG_29756 rno-miR-25 95 115 AGUCUGGCUCUGUUCACGUUAC |||: |:|||| |||||:| -GAGAUGGGGACA-GUGCAGUA Ing4; rCG_29756 rno-miR-291-3p 327 350 CCGUGUGUUUCACCU---UCGUGAAA |:: :| |||||| :||||| AGUGGGC--AGUGGAGUGGGCACUC- Ing4; rCG_29756 rno-miR-291-5p 288 322 -UCUCUCCC-GGAGG-----------UGAAACUAC ||:||||| ||||: :|||||| GAGGGAGGGUCCUCUUCAUUCCCCUUGCUUUGAC- Ing4; rCG_29756 rno-miR-296 63 93 UGUCCUA--------ACUCC--CCCCCGGGA :||:| ||:|| |||||:|| -AGGGGUGCCUGUGCUGGGGAUGGGGGUCCA Ing4; rCG_29756 rno-miR-298 388 414 -CCUUCUUGUCG---GGAGGAGACGG || ||:|||| |||:|||||: AGGUAGGACAGACUGCCUUCUCUGUG Ing4; rCG_29756 rno-miR-29a 260 282 UUGGCUAAAG-UCUACCACGAU- ||| :| |||||||: -UCCGUGGGGAGGUUGGUGCUGU Ing4; rCG_29756 rno-miR-29b 244 282 UUGUGACU--AAAG-----------UUU--ACCACGAU- ||||| |||: :|: |||||||: -UCACUGUCCUUUUGCCUCCGUGGGGAGGUUGGUGCUGU Ing4; rCG_29756 rno-miR-29c 260 282 UGGCUAAAGUUU-ACCACGAU- ||| |||||||: UCCGUGGGGAGGUUGGUGCUGU Ing4; rCG_29756 rno-miR-32 318 339 CGUUGAAUCAUUACACGUUAU- :|||||| |:|| |||:|: -UGACUUAGAAGUGGGCAGUGG Ing4; rCG_29756 rno-miR-324-5p 65 88 UGUGGUUACGGGAU---CCCCUACGC- ::||||: ||||||| | ----GGGUGCCUGUGCUGGGGAUGGGG Ing4; rCG_29756 rno-miR-326 74 97 -UGACCUCCU--UCCCGGGUCUCC :|||| ||| :|||:||||:| UGCUGG-GGAUGGGGGUCCAGGGA Ing4; rCG_29756 rno-miR-331 75 97 AAGAUCCUA---UCCGGGUCCCCG ||:||: :||:|||||| -GCUGGGGAUGGGGGUCCAGGGA- Ing4; rCG_29756 rno-miR-336 46 71 -UCUGAUCUAUACCU------UCCCACU :|:|||| |||| :||||| UGGGCUAG---UGGACAGAGAGGGGUGC Ing4; rCG_29756 rno-miR-338 55 82 AGUUGUUUUA------GUGACUACGACCU- :|||:|: | ||| ||||||: -GGACAGAGAGGGGUGC-CUG-UGCUGGGG Ing4; rCG_29756 rno-miR-340 47 69 -CCGAUAUUUCAUUGACUCUGCCU- ||||| :|| |||| ||: GGGCUAGUG---GACAGAGAGGGGU Ing4; rCG_29756 rno-miR-342 61 83 -CUGCCCACGCUAAAGACAC-ACUCU- || |||||| ||||| ||:|: AGAGGGGUGC-----CUGUGCUGGGGA Ing4; rCG_29756 rno-miR-343 75 100 AGACCCGUGUGCC----UCCCUCU- ||||| |: || ||||||| GCUGGGGAUGGGGGUCCAGGGAGAU Ing4; rCG_29756 rno-miR-344 445 469 UGCCAG----UCCGAAACC-GAUCUAGU |||| :|||| ||| |||| -AGGUCAUUUGGGCUGUGGCCUAGU--- Ing4; rCG_29756 rno-miR-345 72 97 -CGUGACCUG-AUCCCCA-GUCGU- |::||||: |:||||| ||| : UGUGCUGGGGAUGGGGGUCCAGGGA Ing4; rCG_29756 rno-miR-346 667 708 -UCUCCGUCCG-----UGAG---------UCCG--UCUGU ||||||||| :||: ||| ||||| GAGAGGCAGGAGGAUGGCUUGCCAGAAAUAGGACAAGACAU Ing4; rCG_29756 rno-miR-347 82 108 -ACCCGCUGGGUC------UCCCUGU- |||| | :|||| :|||||| AUGGGGG-UCCAGGGAGAUGGGGACAG Ing4; rCG_29756 rno-miR-34a 380 406 -UUGUUGGUCGAUUCUG--UGACGGU :: |||:|| ||:||| |||||| UGGGAACUAGGUAGGACAGACUGCCU Ing4; rCG_29756 rno-miR-34b 574 600 GUUAG--UCGAUUAAUGUGA-CGGAU ||| ||||| ||:|| |||| AAAUAAAAGCUAUCCACGCUAGCCUC Ing4; rCG_29756 rno-miR-34c 568 600 -CGUUAG------UCGAUUGAUGUGA-CGGA- |:|:| ||||| | ||:|| |||| GGUAGUAAAUAAAAGCUAUCCACGCUAGCCUC Ing4; rCG_29756 rno-miR-351 46 84 GUCCGAG---------UUUCCCGAGGA----GUCCCU- :|||| :|:|||: ||| ::|||| UGGGCUAGUGGACAGAGAGGGGUGCCUGUGCUGGGGAU Ing4; rCG_29756 rno-miR-363-5p 724 758 UUUAACGUAGCACU-------------AGGUGGGC- |||: :|||: ||||||:| --UUUGUCCUGUGGUAUCCUCAGCUUCUCCACCUGG Ing4; rCG_29756 rno-miR-370 146 182 UUGG-UCCA----AGG--UGGGGUCG-----UCCG- :|: ||| ||| |||||||: |||: UGCUGAGGCUGCAUCCAAACCCCAGUAGAGAAGGUG Ing4; rCG_29756 rno-miR-376b 470 495 -UCACCUACAA----GGAGAUACUA ||||| ||||||||: GAGUGGUUACCCCAACCUCUAUGGC Ing4; rCG_29756 rno-miR-412 47 76 UGCCGAUCACCUGG-----UCCACUU-CA- ||||||||||| :|||| || -GGGCUAGUGGACAGAGAGGGGUGCCUGUG Ing4; rCG_29756 rno-miR-422b 68 95 -CGGAA--GACUG--AGGUUCAGGUCA |||| |||: | ::|||||| UGCCUGUGCUGGGGAUGGGGGUCCAGG Ing4; rCG_29756 rno-miR-424 486 512 -AGGUUUUGUA---CUUAACGACGAC- ||:| :| ||||| |||||| CUCUAUGGCCCGGGGAAUU-CUGCUGA Ing4; rCG_29756 rno-miR-431 671 703 ACGUA---CUGCCGGACG-------UUCUGU- ||| ||:|||:||| |:|||| GGCAGGAGGAUGGCUUGCCAGAAAUAGGACAA Ing4; rCG_29756 rno-miR-449 384 406 -UGGUCGA--UUGUUAUGUGACGGU ||:|| | :|||: |||||| AACUAGGUAGGACAG---ACUGCCU Ing4; rCG_29756 rno-miR-483 59 89 UGUUCUGCCCU---------CCCCU-CCUCACU :||| ||| ||||| ||:| -AGAGAGGGGUGCCUGUGCUGGGGAUGGGGG-- Ing4; rCG_29756 rno-miR-494 268 289 -UCCAAAGGGCAC-AUACAAAGU- ||||| ||| |:||||||| GAGGUUG---GUGCUGUGUUUCAG Ing4; rCG_29756 rno-miR-542-5p 191 218 GCACUGUACUACU--------AGGGGCUC |||| |||| |||||| -CUGACGGGAUGUGCUCUCCUUCCCCGC- Ing4; rCG_29756 rno-miR-92 85 116 GUCCGG----------CCCUGUUCACGUUAU- :||:| |||||| |||||:|| GGGGUCCAGGGAGAUGGGGACA-GUGCAGUAC Ing4; rCG_29756 rno-miR-93 761 790 GAUGGACGU-GCUU----GUCGUGAAAC- |:|| ||| ||:: ||| |||||| GUGCCGGCAUCGGGGACUCAGAACUUUGU Ing4; rCG_29756 rno-miR-96 670 694 -UCGU--UUUUACACGAUCACGGUUU- :||| |::||| ||| |||||:| AGGCAGGAGGAUG-GCU--UGCCAGAA Ing4; rCG_29756 rno-miR-98 388 408 UUGUUAUGUUGAAUGAUGGAGU ::|| :|| |||:|||: --AGGUAGGACAGACUGCCUUC Ing4; rCG_29756 rno-let-7a 384 407 UUGAU--AUGUUGGAUGAUGGAgu ||||| || :|| |||:||| AACTAGGTAGGACAGACTGCCTtc Ing4; rCG_29756 rno-let-7c 384 407 UUGGU--AUGUUGGAUGAUGGAgu |||:| || :|| |||:||| AACTAGGTAGGACAGACTGCCTtc Ing4; rCG_29756 rno-miR-1 635 656 AUGUGUGA-AGAAAUGUAAGgu || :||:| |:|||:||||| TAAGCATTCTTTTTGCATTCtc Ing4; rCG_29756 rno-miR-103 487 509 AG-UAUCGGGACAUGUUACGACGA || ||:|||| | : ||| ||||| TCTATGGCCC-GGGGAATTCTGCT Ing4; rCG_29756 rno-miR-107 488 509 acUAUCGGGACAUGUUACGACGA ||:|||| | : ||| ||||| ctATGGCCC-GGGGAATTCTGCT Ing4; rCG_29756 rno-miR-122a 788 809 ugUUUGUGGUAACA-GUGUGAGGu || :|| | || |:|:|||| gtAATTACGA--GTACGCGCTCCg Ing4; rCG_29756 rno-miR-125a 74 96 guGUCCAAU-UUCCCAGAGUCCCU | || | ::||||| |||||| tgCTGGGGATGGGGGTC-CAGGGA Ing4; rCG_29756 rno-miR-125b 76 96 aguguucAAUCCCAGAGUCCCU | :||||| |||||| ctggggaTGGGGGTC-CAGGGA Ing4; rCG_29756 rno-miR-127 68 93 uCGG-UUCGA-GUCUG--CCUAGGcu ||| : ||| :||: ||:||| tGCCTGTGCTGGGGATGGGGGTCCag Ing4; rCG_29756 rno-miR-133a 72 93 uguCGACCAACU-UCCCCUGGUu ||||| || :|||| ||| tgtGCTGG-GGATGGGGGTCCAg Ing4; rCG_29756 rno-miR-133b 73 93 auCGACCAACU-UCCCCUGGUu ||||| || :|||| ||| gtGCTGG-GGATGGGGGTCCAg Ing4; rCG_29756 rno-miR-140* 713 737 acaggcACCA-AGAUGGGACACCAU |||| |:|::||||||||| ccaaaaTGGTCTTTGTCCTGTGGTA Ing4; rCG_29756 rno-miR-142-3p 89 111 AGGUAUUUCAUCCUUUGUGAUGU |||| ::|| ||::||| |:|| TCCAGGGAGATGGGGACAGTGCA Ing4; rCG_29756 rno-miR-143 99 125 ACUCGAUGUCACG--A----AGUAGAGu ||:| ||||||| | ||||| | TGGG-GACAGTGCAGTACCGTCATCCCt Ing4; rCG_29756 rno-miR-148b 57 79 UGUUUCAAGACAC-UACGUGACu |||:|| ||| ||::||| ACAGAGAGGGGTGCCTGTGCTGg Ing4; rCG_29756 rno-miR-150 69 89 guGACCAUGUUCCCAACCCUCu || ||:| :||| ||||:| gcCT-GTGCTGGGGATGGGGGt Ing4; rCG_29756 rno-miR-151* 394 421 aUGAUCUGAC-------ACUCGAGGAGcu || |||||| || ||||:|| gAC-AGACTGCCTTCTCTGTGCTCTTCct Ing4; rCG_29756 rno-miR-184 711 731 UGGGAAUAGUCAAGAGGCAGGu |||| | ::| |||::|||| ACCCAAAATGG-TCTTTGTCCt Ing4; rCG_29756 rno-miR-185 413 429 cuuGACGGAAAGAGAGGU || || ||:|||||| gctCTTCC-TTTTCTCCA Ing4; rCG_29756 rno-miR-187 681 704 gCCG-ACG--UUGUGUUCUGUGCU ||| ||| :| |:|:|||| || tGGCTTGCCAGAAATAGGACAAGA Ing4; rCG_29756 rno-miR-189 320 347 UGA--CUAUA---GUCGAGUCAUCCGUG ||| || :| |||: |||:||||| ACTTAGAAGTGGGCAGTGGAGTGGGCAC Ing4; rCG_29756 rno-miR-193 379 400 gACCC-UGAAACAUCCGGUCaa |||| ||| ||||| ||| tTGGGAACTAGGTAGGACAGac Ing4; rCG_29756 rno-miR-196b 382 406 ggUUGUU--GUCC--UUUGAUGGAu ||| | :||| |:|||:||| ggAACTAGGTAGGACAGACTGCCTt Ing4; rCG_29756 rno-miR-207 660 682 uucCCUCCUCUCGGUCCUCUUcg ||| ||||| ||||||:| attGGATGAGAGGCAGGAGGAtg Ing4; rCG_29756 rno-miR-20b* 140 160 gucuuCACGAGUGUGACGUca ||||| | :||||| attcgGTGCTGAGGCTGCAtc Ing4; rCG_29756 rno-miR-211 530 563 UCCGUUUC----CUA-C---UG----UUUCCCUu |||:::|| ||| | || ||||||| AGGTGGAGCCCAGATAGCTCACATGTAAAGGGAg Ing4; rCG_29756 rno-miR-211 47 68 uCCGUUUCCUACUG--UUUCCCuu ||| |: | ||| |:|||| gGGCTAGTG--GACAGAGAGGGgt Ing4; rCG_29756 rno-miR-212 597 622 ccGGCAC---UGAC--CUCUGACAAu |:||| |:|| ||||||||| ctCTGTGTTTATTGTAGAGACTGTTt Ing4; rCG_29756 rno-miR-214 57 79 gacggacagaCACGG--ACGACa ||||| ||||| acagagagggGTGCCTGTGCTGg Ing4; rCG_29756 rno-miR-215 434 451 cagaCAGUUUAGUAUCCAGUA ||| |: |||||||| gaggGTC---TTCTAGGTCAT Ing4; rCG_29756 rno-miR-217 88 114 uAGGUCAGUCAAGGAC---UACGUCAU ||||| || | | :||||||| gTCCAGGGAGATGGGGACAGTGCAGTA Ing4; rCG_29756 rno-miR-222 535 559 CUCUGGGUC-AUCG-GUCUACAUcga ||| ||||| |||| || ||||| GAG-CCCAGATAGCTCACATGTAaag Ing4; rCG_29756 rno-miR-24 30 52 GAC-AAGGACGACUUGACUCGGU ||| ||| |||| |||:||:| CTGAATCCCCCTGACCTGGGCTA Ing4; rCG_29756 rno-miR-25 94 114 agUCUGGCUCUGUUCACGUUAc |||: |:||| ||||||:| ggAGATGGGGAC-AGTGCAGTa Ing4; rCG_29756 rno-miR-291-3p 331 350 CCGUGUGUUUCACCUUCGUGAaa |||| ::::|||| :||||| GGCA-GTGGAGTG--GGCACTct Ing4; rCG_29756 rno-miR-291-5p 289 322 UCUCUCCC-GGAG--GU---------GAAACUac ||:||||| |||| || |||||| AGGGAGGGTCCTCTTCATTCCCCTTGCTTTGAct Ing4; rCG_29756 rno-miR-296 70 92 uGUCCUAACUCC--CCCCCGGGa | | : ||:|| |||||:|| cCTGTGCTGGGGATGGGGGTCCa Ing4; rCG_29756 rno-miR-298 389 413 CCUUCUUGUC-G--GGAGGAGACgg || ||:|||| | |||:||||| GGTAGGACAGACTGCCTTCTCTGtg Ing4; rCG_29756 rno-miR-29a 259 280 uuGGCUAAAGUCU-ACCACGAu ||| ||: ||||||| ctCCGTGGGGAGGTTGGTGCTg Ing4; rCG_29756 rno-miR-29b 258 280 uugugacuaaaguuuACCACGAu ||||||| cctccgtggggaggtTGGTGCTg Ing4; rCG_29756 rno-miR-29c 261 280 uggcuaaaguuuACCACGAu ||||||| ccgtggggaggtTGGTGCTg Ing4; rCG_29756 rno-miR-30b 602 625 uCGACUCACAUC-CU-ACAAAUGu |:| | ||||| || ||||||| tGTTTATTGTAGAGACTGTTTACg Ing4; rCG_29756 rno-miR-30c 598 625 cGACUC---UCACAUC-CU-ACAAAUGu ||| | | ||||| || ||||||| tCTGTGTTTATTGTAGAGACTGTTTACg Ing4; rCG_29756 rno-miR-32 317 337 cguUGAAUCAUUACACGUUAu |||||| |:|| |||:| ttgACTTAGAAGTGGGCAGTg Ing4; rCG_29756 rno-miR-324-3p 322 338 ggUCGUCGUGGACCCCGUCACC || ||: ||||||||| ttAGAAGT-----GGGCAGTGG Ing4; rCG_29756 rno-miR-324-5p 67 86 uguGGUUACGGGAUCCCCUACgc || :|||: ||||||| gtgCCTGTGCT---GGGGATGgg Ing4; rCG_29756 rno-miR-326 75 96 uGACCUCCU--UCCCGGGUCUCc |||| ||| :|||:||||:| gCTGG-GGATGGGGGTCCAGGGa Ing4; rCG_29756 rno-miR-330 298 320 aGAGACGUCCGGGACACGAAACg |||| || ||| ||||||| cCTCTTCATTCCCCTTGCTTTGa Ing4; rCG_29756 rno-miR-331 74 97 AAGA-UCCUA--UCCGGGUCCCcg | || :|||| :||:|||||| TGCTGGGGATGGGGGTCCAGGGag Ing4; rCG_29756 rno-miR-336 47 70 uCUGAU---CUAUACCUUCCCACu |:||| || | ||:||||| gGGCTAGTGGACAGAGAGGGGTGc Ing4; rCG_29756 rno-miR-338 57 80 aGU-UGUUUUAGUGACUACGACCu || | |::: ::| :|||||| aCAGAGAGGGGTGCCTGTGCTGGg Ing4; rCG_29756 rno-miR-340 48 67 CCGAUAUUUCA-UUGACUCUGCCu |||| ||| :|| |||| || GGCT----AGTGGACAGAGAGGGg Ing4; rCG_29756 rno-miR-342 62 81 CUGCCCACGCUAAAGACAC-ACUCu || |||||| ||||| ||:| GAGGGGTGC-----CTGTGCTGGGg Ing4; rCG_29756 rno-miR-343 277 295 aGACCCGUGUGCCUCCCUCu ||| |: : | ||||||| gCTGTGT-TTCAGAGGGAGg Ing4; rCG_29756 rno-miR-344 429 450 UGCCAGUCC--GAAACCGAUCUAGU |:|| ||| ||| ||||:||| ATGGGGAGGGTCTT---CTAGGTCA Ing4; rCG_29756 rno-miR-345 73 95 CGUGA-CCUGAUCCCCA-GUCgu |::|| ||: |:||||| ||| GTGCTGGGGATGGGGGTCCAGgg Ing4; rCG_29756 rno-miR-346 668 694 UCUCCGUCC-----GUGAGUCCGUCUgu ||||||||| :||: | |||| AGAGGCAGGAGGATGGCTT-GCCAGAaa Ing4; rCG_29756 rno-miR-347 83 106 ACCCGCUGG---GUCU--CCCUGU |||| | || ||| |||||| TGGGGGTCCAGGGAGATGGGGACA Ing4; rCG_29756 rno-miR-34a 381 405 uugUUGGUCGAUUCUG--UGACGGu |||:|| ||:||| |||||| gggAACTAGGTAGGACAGACTGCCt Ing4; rCG_29756 rno-miR-34b 383 406 gUUAGUCGAUUAAUG--UGACGGAu || :|| ||: || ||||||| gAACTAGGTAG-GACAGACTGCCTt Ing4; rCG_29756 rno-miR-34b 576 599 guuagUCGAUUAAUGUGA-CGGAu ||||| ||:|| |||| ataaaAGCTATCCACGCTAGCCTc Ing4; rCG_29756 rno-miR-34c 575 598 cguuagUCGAUUGAUGUGA-CGGA ||||| | ||:|| |||| aataaaAGCTATCCACGCTAGCCT Ing4; rCG_29756 rno-miR-351 71 96 GUC-CGA--GUUUCCCGAGGAGUCCCU | | ||| :| ||| :| |||||| CTGTGCTGGGGATGGGGGTC-CAGGGA Ing4; rCG_29756 rno-miR-363-5p 730 756 uuuAACGUAGCACU-----AGGUGGGC | |:||| | | ||||||:| ctgTGGTATCCTCAGCTTCTCCACCTG Ing4; rCG_29756 rno-miR-370 151 175 UUGGUCCAAGG--UGGGGUCGUCcg |: | | ||| |||||||:|| AGGCTGCATCCAAACCCCAGTAGag Ing4; rCG_29756 rno-miR-376b 471 494 UCACCUA----CAAGGAGAUACua ||||| | |||||||| AGTGGTTACCCCAACCTCTATGgc Ing4; rCG_29756 rno-miR-412 46 73 ugCCGAUCACCUG-----GUCCACuuca ||||||||||| :|||| tgGGCTAGTGGACAGAGAGGGGTGcctg Ing4; rCG_29756 rno-miR-422b 69 94 CGGA-A-GA--CUGAGGUUCAGGUCa |||| | || |: | ::|||||| GCCTGTGCTGGGGATGGGGGTCCAGg Ing4; rCG_29756 rno-miR-424 487 510 AGGUUUU--GUACUUAACGACGAC ||:| :: |: |:| | |||||| TCTATGGCCCGGGGAATTCTGCTG Ing4; rCG_29756 rno-miR-431 674 694 aCGUACUGCCGGACGUUCUgu | | ||:|||:||| ||| aGGAGGATGGCTTGCCAGAaa Ing4; rCG_29756 rno-miR-449 385 405 UGGUCGAU--UGUUAUGUGACGGu ||:|| || |||: |||||| ACTAGGTAGGACAG---ACTGCCt Ing4; rCG_29756 rno-miR-483 38 70 uguuCUG--CCC--UC-CC-----CUCCUCACu ||| ||| || || ||||:||| ccctGACCTGGGCTAGTGGACAGAGAGGGGTGc Ing4; rCG_29756 rno-miR-494 269 287 UCCAAAGGGCAC-AUACAAAGU ||||| ||| |:||||||| AGGTT---GGTGCTGTGTTTCA Ing4; rCG_29756 rno-miR-542-5p 195 218 GCACUGUACUA---CUAGGGGCuc || ||::|| | |||||| CGGGATGTGCTCTCCTTCCCCGcc Ing4; rCG_29756 rno-miR-92 91 114 GUCC----GGCCCUGUUCACGUUAU |||| : ||||| ||||||:|| CAGGGAGATGGGGAC-AGTGCAGTA Ing4; rCG_29756 rno-miR-96 671 692 uCGU--UUUUACACGAUCACGGUUU ||| |::||| ||| |||||:| gGCAGGAGGATG-GCT--TGCCAGA Ing4; rCG_29756 rno-miR-98 384 407 UUGUU--AUGUUGAAUGAUGGAgu ||| | || :|| |||:||| AACTAGGTAGGACAGACTGCCTtc Ing4; rCG_29756 rno-miR-140* 730 737 ACAGGC------------------ACCA-AGAUGGGACACCAU |||| |:| ||||||||| UAGGACAAGACAUAAAACCCAAAAUGGUCUUUGUCCUGUGGUAU Ing4; rCG_29756 rno-miR-192 444 451 ------------------------CCGA-CAGUUAAGUAUCCAGUC || ||| ||| ||||||| CUGUGCUCUUCCUUUUCUCCAUGGGGAGGGUC--UUC-UAGGUCAU Ing4; rCG_29756 rno-miR-211 556 563 ---------UCCGUUUCCUACU------------GUUUCCCUU ||| :|| :|||||||: GGAGAGGGAAGGUGGAGCCCAGAUAGCUCACAUGUAAAGGGAGU Ing4; rCG_29756 rno-miR-212 615 622 CC-----------------GGCAC---UGAC--CUCUGACAAU |:||| |:|| ||||||||| AAGCUAUCCACGCUAGCCUCUGUGUUUAUUGUAGAGACUGUUU Ing4; rCG_29756 rno-miR-215 444 451 CAGA-------------------------CAGUUUAGUAUCCAGUA ||| || |||||||| CUGUGCUCUUCCUUUUCUCCAUGGGGAGGGUCU--UC-UAGGUCAUU Ing4; rCG_29756 rno-miR-29a 273 280 UU---------------------GGCUAAAG-UCUACCACGAU ||| :| |||||||: UCCCACUCACUGUCCUUUUGCCUCCGUGGGGAGGUUGGUGCUGU Ing4; rCG_29756 rno-miR-29b 273 280 UU-----GUGACUA-AAGUUU--------------ACCACGAU ||||| ||: |||||||: UCCCACUCACUGUCCUUUUGCCUCCGUGGGGAGGUUGGUGCUGU Ing4; rCG_29756 rno-miR-29c 273 280 U----------------------GGCUAAAGUUU-ACCACGAU ||| |||||||: UCCCACUCACUGUCCUUUUGCCUCCGUGGGGAGGUUGGUGCUGU Ing4; rCG_29756 rno-miR-30b 618 625 UC--------------GACUCA-----CAUC-CU-ACAAAUGU ||| || |||| || |||||||: CUAUCCACGCUAGCCUCUGUGUUUAUUGUAGAGACUGUUUACGU Ing4; rCG_29756 rno-miR-30c 618 625 C---------------GACUCUC---ACAUC-CU-ACAAAUGU ||| | ||||| || |||||||: CUAUCCACGCUAGCCUCUGUGUUUAUUGUAGAGACUGUUUACGU Ing4; rCG_29756 rno-miR-324-3p 331 338 --------------GGU-CGU--CGUGGA----C-CCCGUCACC || || | ||:| | ||||||||| GUCCUCUUCAUUCCCCUUGCUUUG-ACUUAGAAGUGGGCAGUGGA Ing4; rCG_29756 rno-miR-330 313 320 A--------------------GAGACGUCCGGGACACGAAACG |||| || ||| ||||||| CUGUGUUUCAGAGGGAGGGUCCUCUUCAUUCCCCUUGCUUUGA Ing4; rCG_29756 rno-miR-343 288 295 A------------------GACC-CGUGU----GCCUCCCUCU :||| || | |||||||: UUUUGCCUCCGUGGGGAGGUUGGUGCUGUGUUUCAGAGGGAGGG Ing4; rCG_29756 rno-miR-34b 399 406 GUUA-------------------GUCGAUUAA-UGUGACGGAU :|| ||: | ||||||| AUCCUCCUUCCCCCAUUGGGAACUAGGUAGGACAGACUGCCUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ing4 RAID00014348 rno-miR-466c-3p miRNA MIMAT0017287 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID00527524 rno-miR-208a-5p miRNA MIMAT0017155 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID00563350 rno-miR-452-3p miRNA MIMAT0035749 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID00619993 rno-miR-3065-3p miRNA MIMAT0017840 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID00727177 rno-miR-29b-3p miRNA MIMAT0000801 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID00812539 rno-miR-330-3p miRNA MIMAT0000568 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID02565561 rno-miR-29c-3p miRNA MIMAT0000803 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID02901068 rno-miR-3099 miRNA MIMAT0025048 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID03378120 rno-miR-29a-3p miRNA MIMAT0000802 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID03626297 rno-miR-3541 miRNA MIMAT0017795 Ing4 mRNA 297597 Prediction 0.1828 Ing4 RAID03942694 rno-miR-208b-5p miRNA MIMAT0017844 Ing4 mRNA 297597 Prediction 0.1828