DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000570 rno-miR-331 362814 Rnf41 aagauccuauccgGGUCCCCg ||||||| cucucuuccaaaaCCAGGGGa 2 9 407 427 [rn4:7:1725334-1725354:+] 0.5654 140 7 -17.62 -0.8843 MIMAT0000601 rno-miR-129* 362814 Rnf41 uacgaaaaaccccaUUCCCGAa ||||||| cugacauccagcagAAGGGCUa 2 9 476 497 [rn4:7:1725403-1725424:+] 0.5654 140 7 -11.74 -0.3908 MIMAT0003152 rno-miR-22* 362814 Rnf41 auuucgaacggUGACUUCUUga | ||||||| aaagaaaaaaaAAUGAAGAAaa 3 12 934 955 [rn4:7:1725861-1725882:+] 0.5438 127 0 -9.51 -0.3024 MIMAT0004712 rno-miR-23a* 362814 Rnf41 uuUAGGGUAG-GGGUCCUUGGGg | ||: || | :||||||| ucAGCCUUUCAGCGGGGAACCCa 2 21 154 176 [rn4:7:1725081-1725103:+] 0.6249 151 7 -22.98 -0.5063 MIMAT0003153 rno-miR-24-1* 362814 Rnf41 gacuauagucgagUCAUCCGUg :||||||| agggaaggaagagGGUAGGCAu 2 10 630 651 [rn4:7:1725557-1725578:+] 0.5438 141 7 -15.97 -0.2283 MIMAT0005441 rno-miR-24-2* 362814 Rnf41 ugacaaagucgagUCAUCCGUg :||||||| agggaaggaagagGGUAGGCAu 2 10 630 651 [rn4:7:1725557-1725578:+] 0.5438 141 7 -14.06 -0.2304 MIMAT0004739 rno-miR-204* 362814 Rnf41 uugcagggaAACGGAAGGG-UCg |||::||||| || caaagacacUUGUUUUCCCUAGa 2 14 301 323 [rn4:7:1725228-1725250:+] 0.5654 121 0 -17.54 -0.4957 MIMAT0005446 rno-miR-219-2-3p 362814 Rnf41 ugucuacAGGUCGGUGUUA-AGa ||| ||||||| || auauuccUCCCCCCACAAUGUCu 2 16 194 216 [rn4:7:1725121-1725143:+] 0.5654 123 0 -15.46 -0.5678 MIMAT0004743 rno-miR-300-5p 362814 Rnf41 uguuuccUAU-UGGAGAGAAGUu :|| :|| ||||||| uugccucGUAGGCCCCUCUUCAg 2 16 730 752 [rn4:7:1725657-1725679:+] 0.5438 150 7 -18.51 -0.1067 MIMAT0003115 rno-miR-207 362814 Rnf41 uucccuccucUCGGUCCUCUUcg || ||||||| uuuuuuuuuaAGAAAGGAGAAaa 3 14 914 936 [rn4:7:1725841-1725863:+] 0.5438 129 0 -11.74 -0.2048 MIMAT0003382 rno-miR-664 362814 Rnf41 auccgaccccucaUUUACUUau ||||||| agaaaagaaaaaaAAAUGAAga 3 10 931 952 [rn4:7:1725858-1725879:+] 0.5438 125 0 -4.23 -0.1730 MIMAT0012827 rno-miR-1224 362814 Rnf41 gagguggagGGGUCAGGAGUg |:::||||||| aggccaggaCUUGGUCCUCAc 2 13 528 548 [rn4:7:1725455-1725475:+] 0.5654 148 7 -24.51 -0.1169 MIMAT0012831 rno-miR-544 362814 Rnf41 cucgaacgaUUUUUACGUCUUa ||||||| |||| aaaagaaaaAAAAAUGAAGAAa 2 14 933 954 [rn4:7:1725860-1725881:+] 0.5438 133 0 -7.83 -0.1609 MIMAT0012843 rno-miR-876 362814 Rnf41 accACUAAGU---GUCUCUUUAGGu | | ||| ::||||||||| uuuUCAGUCAGGGUGGAGAAAUCCc 2 20 222 246 [rn4:7:1725149-1725173:+] 0.5654 154 7 -16.99 -0.3083 MIMAT0012854 rno-miR-764 362814 Rnf41 uccuccuGUAC-ACUCGUGg ::|| ||||||| agaccuuUGUGCUGAGCACa 2 13 565 584 [rn4:7:1725492-1725511:+] 0.5654 143 7 -14.91 -0.3000 MIMAT0001619 rno-miR-322 362814 Rnf41 agguUUUGUACUUAACGA-CGAc |::|| |: ||||| ||| aagcAGGCA-GGCUUGCUGGCUc 2 19 431 452 [rn4:7:1725358-1725379:+] 0.5654 120 0 -12.95 -0.1344 MIMAT0000589 rno-miR-342-3p 362814 Rnf41 ugCCCACGCUAAAGACAC-ACUCu ||| || |:|||| |||| uuGGGGAAGACCUUUGUGCUGAGc 2 22 558 581 [rn4:7:1725485-1725508:+] 0.5654 125 0 -20.84 -0.1700 MIMAT0000606 rno-miR-7a 362814 Rnf41 ugUUGUUUUAGUGAU-CAGA-AGGu ||:::| | :||: |||| ||| agAAUGGACUGGCUGUGUCUGUCCu 2 22 843 867 [rn4:7:1725770-1725794:+] 0.5438 124 0 -12.04 -0.1117 MIMAT0000781 rno-miR-9 362814 Rnf41 aguaUGUCGAUCUAUUGGUUUCu ||||: :|:||||||| gcuaACAGU---GUGACCAAAGc 2 20 494 513 [rn4:7:1725421-1725440:+] 0.5654 151 7 -16.86 -0.1285 MIMAT0000794 rno-miR-24 362814 Rnf41 gaCAAGGACGACUUGACUCGGu | ||| || |:||||||| ccGCUCCAGC--AGCUGAGCCc 2 21 45 64 [rn4:7:1724972-1724991:+] 0.5402 157 7 -18.19 -0.1149 MIMAT0000814 rno-miR-34c 362814 Rnf41 cguuagUCGAUUGAU-GUGACGGa || :: || ||||||| ugcugaAGGAGGAUACCACUGCCc 2 18 689 712 [rn4:7:1725616-1725639:+] 0.5438 144 7 -15.19 -0.1067 MIMAT0000815 rno-miR-34a 362814 Rnf41 uguuggucgauucuGUGACGGu ||||||| cugaaggaggauacCACUGCCc 2 9 691 712 [rn4:7:1725618-1725639:+] 0.5438 140 7 -14.44 -0.1078 MIMAT0000861 rno-miR-184 362814 Rnf41 ugGGAAUAGUCAAGAGGC-AGGu |: |:|| || ||||| ||| ggCUGUGUCUGUCCUCCGAUCCa 2 21 853 875 [rn4:7:1725780-1725802:+] 0.5438 132 0 -22.92 -0.3587 MIMAT0000869 rno-miR-194 362814 Rnf41 agguguaccucaacGACAAUGu ||||||| gucucaaaccucauCUGUUACc 2 9 806 827 [rn4:7:1725733-1725754:+] 0.5438 140 7 -11.49 -0.6039 MIMAT0000878 rno-miR-205 362814 Rnf41 gucUGAGGCCACCUUACUUCCu :||:| ||| ||||||| ccuGCUUC--UGGCAUGAAGGa 2 20 118 137 [rn4:7:1725045-1725064:+] 0.6031 156 7 -19.75 -0.1431 MIMAT0000878 rno-miR-205 362814 Rnf41 gucugaggccaccUUACUUCcu ||||||| gaaaagaaaaaaaAAUGAAGaa 3 10 932 953 [rn4:7:1725859-1725880:+] 0.5438 125 0 -6.55 -0.2227 MIMAT0000888 rno-miR-218 362814 Rnf41 ugUACCAAUCUAGUUCGUGUu || | ||| ||||||| auAUUUUCAGA--AAGCACAa 2 20 285 303 [rn4:7:1725212-1725230:+] 0.5654 148 7 -10.93 -1.0270 MIMAT0004742 rno-miR-296 362814 Rnf41 ccucucGGAGGUGGGUUGGGAg || ||| ||||||| gaccucCCCACACACAACCCUg 2 17 66 87 [rn4:7:1724993-1725014:+] 0.5812 156 7 -22.97 -0.2250 MIMAT0001543 rno-miR-449a 362814 Rnf41 uggucgaUUGUUAU-GUGACGGu :| :||| ||||||| gcugaagGAGGAUACCACUGCCc 2 16 690 712 [rn4:7:1725617-1725639:+] 0.5438 150 7 -16.19 -0.1100 MIMAT0003119 rno-miR-224 362814 Rnf41 auuugccuuggugauCACUGAac |||||| -----------gagcGUGACUga 3 9 1 12 [rn4:7:1724928-1724939:+] 0.7856 120 0 -9.89 -0.1597 MIMAT0003122 rno-miR-370 362814 Rnf41 uuggucCAAG-GUG-GGGUCGUCCg |||| |:| |:||||||| auugguGUUCACGCACUCAGCAGGa 2 18 650 674 [rn4:7:1725577-1725601:+] 0.5438 159 7 -28.65 -0.4856 MIMAT0003123 rno-miR-377 362814 Rnf41 ggUUUUCAACGGAAACAC-ACUa ::||| |||||||| ||| ggGGAAG--ACCUUUGUGCUGAg 2 21 560 580 [rn4:7:1725487-1725507:+] 0.5654 125 0 -16.56 -0.3086 MIMAT0005320 rno-miR-495 362814 Rnf41 uuCUUCACGUGG-UACAAACAAa || | | :: :|||||||| ugGAUUUCCUUUGGUGUUUGUUu 2 21 772 794 [rn4:7:1725699-1725721:+] 0.5438 147 7 -10.74 -0.8052 MIMAT0005339 rno-miR-873 362814 Rnf41 ucCUCUGAGUGUUCAAGGACg |:|: | |||||||||| gcGGGGAACCCAAGUUCCUGc 2 20 165 185 [rn4:7:1725092-1725112:+] 0.5952 163 7 -27.98 -0.3441

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf41 RAID00107853 rno-miR-449a-5p miRNA MIMAT0001543 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID00229420 rno-miR-423-5p miRNA MIMAT0017305 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID00260111 rno-miR-194-5p miRNA MIMAT0000869 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID00479791 rno-miR-207 miRNA MIMAT0003115 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01010301 rno-miR-326-5p miRNA MIMAT0017028 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01232495 rno-miR-1188-3p miRNA MIMAT0017855 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01278867 rno-miR-3575 miRNA MIMAT0017861 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01308794 rno-miR-34c-5p miRNA MIMAT0000814 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01365112 rno-miR-377-3p miRNA MIMAT0003123 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01564016 rno-miR-3557-3p miRNA MIMAT0017820 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01590796 rno-miR-370-3p miRNA MIMAT0003122 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01611035 rno-miR-9a-5p miRNA MIMAT0000781 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01971601 rno-miR-205 miRNA MIMAT0000878 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID01979527 rno-miR-296-3p miRNA MIMAT0004742 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02118354 rno-miR-184 miRNA MIMAT0000861 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02324272 rno-miR-873-5p miRNA MIMAT0005339 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02417722 rno-miR-495 miRNA MIMAT0005320 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02527227 rno-miR-322-5p miRNA MIMAT0001619 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02719775 rno-miR-146b-3p miRNA MIMAT0017334 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02729795 rno-miR-3573-5p miRNA MIMAT0017856 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02741527 rno-miR-7a-5p miRNA MIMAT0000606 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02834413 rno-miR-218a-5p miRNA MIMAT0000888 Rnf41 mRNA 362814 Prediction 0.2202 Rnf41 RAID02915662 rno-miR-34a-5p miRNA MIMAT0000815 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID02976848 rno-miR-224-5p miRNA MIMAT0003119 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID03165153 rno-miR-24-3p miRNA MIMAT0000794 Rnf41 mRNA 362814 Prediction 0.1828 Rnf41 RAID03672387 rno-miR-342-3p miRNA MIMAT0000589 Rnf41 mRNA 362814 Prediction 0.1828