DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004646 rno-miR-338* 361232 Pak1ip1 gugagucGUGGUCCUAUAACAa :|::| ||||||| ggcauuuUAUUA-UAUAUUGUa 2 16 209 229 [rn4:17:29710470-29710490:-] 0.5022 141 7 -9.40 -1.2757 MIMAT0004655 rno-miR-345-3p 361232 Pak1ip1 agAGGUCUGGGGAUCAAGUCcc ||::|| |||||| cuUCUGGAGAAAAUGUUCAGcu 3 21 123 144 [rn4:17:29710555-29710576:-] 0.5022 124 0 -13.55 -0.1052 MIMAT0004705 rno-let-7b* 361232 Pak1ip1 ccCUUCCGUCAUCCAACAUAUc | | :||| ||||||||| uaGUAUAUAGU-GGUUGUAUAc 2 21 228 248 [rn4:17:29710451-29710471:-] 0.4999 158 7 -15.21 -0.3548 MIMAT0004717 rno-miR-29b-2* 361232 Pak1ip1 gauucggugguacacUUUGGUc |||||| uucagcuuaaaaaaaAAACCAc 2 8 138 159 [rn4:17:29710540-29710561:-] 0.5022 120 6 -7.86 -0.1101 MIMAT0004720 rno-miR-30e* 361232 Pak1ip1 cgacauuuguaggcuGACUUUc |||||| agagcaaguaaagauCUGAAAa 2 8 261 282 [rn4:17:29710417-29710438:-] 0.4976 120 6 -12.70 -0.1717 MIMAT0004722 rno-miR-30d* 361232 Pak1ip1 cgUCGUUUGUAGACUGACUUUc |||||::| |||||| agAGCAAGUAAAGAUCUGAAAa 2 21 261 282 [rn4:17:29710417-29710438:-] 0.4976 128 6 -16.19 -0.1717 MIMAT0000809 rno-miR-30a* 361232 Pak1ip1 cgaCGUUUGUAGGCUGACUUUc ||||::| |||||| agaGCAAGUAAAGAUCUGAAAa 2 20 261 282 [rn4:17:29710417-29710438:-] 0.4976 123 6 -13.45 -0.1717 MIMAT0004723 rno-miR-34c* 361232 Pak1ip1 ggaccGACACACCAA-UCACUAa |||| | ||| |||||| gugcuCUGUUUUGUUAAGUGAUa 2 18 169 191 [rn4:17:29710508-29710530:-] 0.5022 133 6 -12.48 -1.2100 MIMAT0004739 rno-miR-204* 361232 Pak1ip1 uugcAGGGAAACGGAAGGGUCg || | | || |||||| ---uUCACAUGGCAAUCCCAGa 2 19 1 19 [rn4:17:29710680-29710698:-] 0.5789 126 6 -15.53 -0.1154 MIMAT0003207 rno-miR-369-3p 361232 Pak1ip1 uuUCUAGUUGGUACAUAAUAa |||| ::| | |||||| gcAGAU-GGCAUUUUAUUAUa 2 20 203 222 [rn4:17:29710477-29710496:-] 0.5022 125 6 -5.62 -0.1849 MIMAT0003207 rno-miR-369-3p 361232 Pak1ip1 uuucuaguugguacAUAAUAa |||||| uucuccuuuuuaaaUAUUAUa 2 8 54 74 [rn4:17:29710625-29710645:-] 0.5022 120 6 -1.16 -0.2068 MIMAT0005280 rno-miR-743b 361232 Pak1ip1 agauaaGUCAUACCACAGAAAg || | |||||||| ccucccCAACACAGUGUCUUUu 2 17 24 45 [rn4:17:29710654-29710675:-] 0.5163 148 7 -10.70 -0.4740 MIMAT0005281 rno-miR-871 361232 Pak1ip1 acacuggcCGUGGUUAGACUUau |:| :||||||| cagagcaaGUAAAGAUCUGAAaa 3 16 260 282 [rn4:17:29710417-29710439:-] 0.4976 131 0 -13.38 -0.1420 MIMAT0005338 rno-miR-770 361232 Pak1ip1 gcaccgggucuGUGCACCACGa :| ||||||| aaaaccacuuuUAGGUGGUGCu 2 12 152 173 [rn4:17:29710526-29710547:-] 0.5022 143 7 -19.69 -0.5017 MIMAT0012832 rno-miR-568 361232 Pak1ip1 cacACAUAUGUA-AAUAUGua | | || || |||||| uccUUUUUAAAUAUUAUACuu 3 18 57 77 [rn4:17:29710622-29710642:-] 0.5022 132 0 -5.21 -0.1245 MIMAT0000573 rno-miR-140 361232 Pak1ip1 gaugguaucccaUUUUGGUGAc ||||||||| cagcuuaaaaaaAAAACCACUu 2 11 140 161 [rn4:17:29710538-29710559:-] 0.5022 150 7 -12.26 -1.0839 MIMAT0000589 rno-miR-342-3p 361232 Pak1ip1 ugcccacgcuaaagacACACUCu |||||| auacuuaacuuucccaUGUGAGa 2 8 72 94 [rn4:17:29710605-29710627:-] 0.5022 120 6 -11.25 -0.1018 MIMAT0000596 rno-miR-346 361232 Pak1ip1 ucuccguccGUGAGUCCGUCUGu :|:|: ||||||: ugauaaaauUAUUUUGGCAGAUg 2 15 187 209 [rn4:17:29710490-29710512:-] 0.5022 134 0 -12.50 -0.1195 MIMAT0000600 rno-miR-129 361232 Pak1ip1 cguucgggucuggcGUUUUUc |||||| aacaaacaaacaaaCAAAAAa 2 8 95 115 [rn4:17:29710584-29710604:-] 0.5022 120 6 -6.45 -0.1169 MIMAT0000615 rno-miR-101b 361232 Pak1ip1 aagUCGAUAGUGUCAUGACAu || | | | | |||||| uaaAGAUCUGAAAAUACUGUa 2 19 269 289 [rn4:17:29710410-29710430:-] 0.4976 126 6 -9.20 -0.1118 MIMAT0000801 rno-miR-29b 361232 Pak1ip1 uugUGACUAAAGUUUACCACGAu || |||:|::||||||| aaaACCACUUUUAGGUGGUGCUc 2 21 152 174 [rn4:17:29710525-29710547:-] 0.5022 164 7 -20.67 -0.5509 MIMAT0000802 rno-miR-29a 361232 Pak1ip1 auUGGCUAAAGUCUACCACGAu ||| |||:||:||||||| aaACCACUUUUAGGUGGUGCUc 2 21 153 174 [rn4:17:29710525-29710546:-] 0.5022 176 7 -26.41 -0.5509 MIMAT0000803 rno-miR-29c 361232 Pak1ip1 auUGGCUAAAGUUUACCACGAu ||| |||:|::||||||| aaACCACUUUUAGGUGGUGCUc 2 21 153 174 [rn4:17:29710525-29710546:-] 0.5022 172 7 -23.81 -0.5509 MIMAT0000823 rno-miR-101a 361232 Pak1ip1 aagUCAAUAGUGUCAUGACAu || | | | | |||||| uaaAGAUCUGAAAAUACUGUa 2 19 269 289 [rn4:17:29710410-29710430:-] 0.4976 126 6 -8.55 -0.1118 MIMAT0000845 rno-miR-139-5p 361232 Pak1ip1 gaccucugugcacGUGACAUcu :|||||| aaagaucugaaaaUACUGUAuu 3 10 270 291 [rn4:17:29710408-29710429:-] 0.4976 121 0 -10.97 -0.3695 MIMAT0000850 rno-miR-144 361232 Pak1ip1 ucauguaguagaUAUGACAu ||||||| aaagaucugaaaAUACUGUa 2 9 270 289 [rn4:17:29710410-29710429:-] 0.4976 140 7 -11.25 -1.1214 MIMAT0000903 rno-miR-320 361232 Pak1ip1 agcgggagaguUGGGUCGAAaa :::|||||| cuggagaaaauGUUCAGCUUaa 3 12 126 147 [rn4:17:29710552-29710573:-] 0.5022 123 0 -8.76 -0.1263 MIMAT0001549 rno-miR-365 361232 Pak1ip1 uaUUCCUAAAA--AUC-CCCGUAAu || ||||| || |||||| aaAAUUAUUUUGGCAGAUGGCAUUu 2 21 191 215 [rn4:17:29710484-29710508:-] 0.5022 122 6 -9.06 -0.1223 MIMAT0003208 rno-miR-374 361232 Pak1ip1 gugaAUCGUCCAACAUAAUAUa |:||| || ||||||| cagaUGGCA--UUUUAUUAUAu 2 19 204 223 [rn4:17:29710476-29710495:-] 0.5022 155 7 -8.25 -1.1493 MIMAT0003208 rno-miR-374 361232 Pak1ip1 gugaaucguccaacAUAAUAUa ||||||| uucuccuuuuuaaaUAUUAUAc 2 9 54 75 [rn4:17:29710624-29710645:-] 0.5022 140 7 -2.48 -1.1515 MIMAT0005311 rno-miR-410 361232 Pak1ip1 ugUCCGGUAGACACAAUAUAa | | |||:| | |||||| agAUGGCAUUU-UAUUAUAUa 2 20 205 224 [rn4:17:29710475-29710494:-] 0.5022 129 6 -6.42 -0.2320

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pak1ip1 RAID00031557 rno-miR-3084b-3p miRNA MIMAT0035742 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID00105350 rno-miR-129-5p miRNA MIMAT0000600 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID00149882 rno-miR-374-5p miRNA MIMAT0003208 Pak1ip1 mRNA 361232 Prediction 0.2202 Pak1ip1 RAID00697042 rno-miR-346 miRNA MIMAT0000596 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID00868655 rno-miR-139-5p miRNA MIMAT0000845 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID01126619 rno-miR-342-3p miRNA MIMAT0000589 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID01229260 rno-miR-29b-3p miRNA MIMAT0000801 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID01237870 rno-miR-144-3p miRNA MIMAT0000850 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID01590925 rno-miR-3084a-3p miRNA MIMAT0035740 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID01822590 rno-miR-365-3p miRNA MIMAT0001549 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID01965584 rno-miR-140-5p miRNA MIMAT0000573 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID02161986 rno-miR-320-3p miRNA MIMAT0000903 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID02222052 rno-miR-101a-3p miRNA MIMAT0000823 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID02355632 rno-miR-3547 miRNA MIMAT0017802 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID02470850 rno-miR-29a-3p miRNA MIMAT0000802 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID02874055 rno-miR-101b-3p miRNA MIMAT0000615 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID02963855 rno-miR-3084d miRNA MIMAT0035745 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID03437387 rno-miR-338-5p miRNA MIMAT0004646 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID03703208 rno-miR-29c-3p miRNA MIMAT0000803 Pak1ip1 mRNA 361232 Prediction 0.1828 Pak1ip1 RAID03721192 rno-miR-410-3p miRNA MIMAT0005311 Pak1ip1 mRNA 361232 Prediction 0.1828