DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000561 rno-miR-327 360654 Dnai2 ugggaguacggGGAGUUCc ||||||| cacacacacagCCUCAAGu 2 9 244 262 [rn4:10:104640748-104640766:+] 0.5109 140 7 -11.26 -0.1869 MIMAT0004718 rno-miR-29a* 360654 Dnai2 gacuuGUGGUUUUCUUUAGUCa ||: | | ||||||| uuucuCAUAACAUUAAAUCAGu 2 18 646 667 [rn4:10:104641150-104641171:+] 0.5109 149 7 -11.06 -0.6263 MIMAT0004722 rno-miR-30d* 360654 Dnai2 cgucguuuGUAGACU-GACUUUc |:||| | |||||| uuugaugcCGUCUCAUCUGAAAa 2 15 52 74 [rn4:10:104640556-104640578:+] 0.5109 122 6 -11.03 -0.2679 MIMAT0005442 rno-miR-30c-2* 360654 Dnai2 ucucauUUGUCGGAAGA-GGGUc ::||||| ||| |||| ------GGCAGCC-UCUGCCCAc 2 17 1 16 [rn4:10:104640505-104640520:+] 0.5109 122 0 -18.96 -0.2359 MIMAT0004739 rno-miR-204* 360654 Dnai2 uugcaGGGAAACGGAAG-GGUCg || | ||:||| |||| aguuaCCAAUGGCUUUCUCCAGa 2 18 315 337 [rn4:10:104640819-104640841:+] 0.5109 121 0 -19.38 -0.6364 MIMAT0004741 rno-miR-219-1-3p 360654 Dnai2 gcccugcaggucuGCGUUGAGa :||||||| cuccccuggccucUGCAACUCu 2 10 201 222 [rn4:10:104640705-104640726:+] 0.5109 141 7 -16.75 -0.1254 MIMAT0004741 rno-miR-219-1-3p 360654 Dnai2 gcCCUG--CAGGUCUGCG-UUGAGa |||| |||: ::|| ||||| uaGGACUUGUCUCUGUGCUAACUCc 2 21 180 204 [rn4:10:104640684-104640708:+] 0.5109 123 0 -18.54 -0.1458 MIMAT0000900 rno-miR-298 360654 Dnai2 cccuucUUGUCGGGA--GGAGACGg ||| |||| ||||||| ugugcuAACUCCCCUGGCCUCUGCa 2 18 193 217 [rn4:10:104640697-104640721:+] 0.5109 156 7 -22.46 -0.2122 MIMAT0005285 rno-miR-877 360654 Dnai2 gggacgcGGUAGAGG-AGAUg :||||||| |||| cuaacuuUCAUCUCCAUCUAu 2 14 500 520 [rn4:10:104641004-104641024:+] 0.5109 125 0 -18.80 -0.7781 MIMAT0005327 rno-miR-672 360654 Dnai2 agugugugucaugUGGUUGGAGu | ||||||| uaaugccuucccaAGCAACCUCc 2 11 520 542 [rn4:10:104641024-104641046:+] 0.5109 142 7 -11.47 -0.1669 MIMAT0005329 rno-miR-674-5p 360654 Dnai2 auguggugaggguagAGUCACg |||||| ucucauaacauuaaaUCAGUGa 2 8 648 669 [rn4:10:104641152-104641173:+] 0.5109 120 6 -14.39 -0.2719 MIMAT0005333 rno-miR-742 360654 Dnai2 aaAUGGGUUGUACCACCGAAAg || ::| || ||||||| agUAGUUACCA--AUGGCUUUc 2 21 312 331 [rn4:10:104640816-104640835:+] 0.5109 145 7 -15.24 -0.5303 MIMAT0005338 rno-miR-770 360654 Dnai2 gcaCCG--GGUCUGUGCACCA-CGa ||| |: |||||||||| || ggaGGCAUCUUGACACGUGGUCGCa 2 20 545 569 [rn4:10:104641049-104641073:+] 0.5109 134 0 -26.81 -0.1733 MIMAT0000784 rno-miR-15b 360654 Dnai2 acaUUUGGUACUACACG-ACGAu ||:|| |||||| |||| gccAAGCC-CCAUGUGCAUGCUu 2 20 140 161 [rn4:10:104640644-104640665:+] 0.5109 125 0 -17.64 -0.1581 MIMAT0000849 rno-miR-143 360654 Dnai2 acUCGAUGUCACGAAGUAGAGu | ||| | | |||||||| agAACUA-ACU--UUCAUCUCc 2 21 496 514 [rn4:10:104641000-104641018:+] 0.5109 147 7 -13.92 -0.9534 MIMAT0000862 rno-miR-185 360654 Dnai2 agUC-CUUGACGGAAAG-AGAGGu || ||||| ||||| ||||| aaAGAGAACUAACUUUCAUCUCCa 2 21 492 515 [rn4:10:104640996-104641019:+] 0.5109 139 0 -24.83 -1.1547 MIMAT0003193 rno-miR-494 360654 Dnai2 uccAAAGGGCACAUACAAAGu |||:|:| |||||||| gguUUUUCUGGCUAUGUUUCu 2 19 630 650 [rn4:10:104641134-104641154:+] 0.5109 166 7 -17.35 -0.4984 MIMAT0003194 rno-miR-376c 360654 Dnai2 ugCACUUUAAAGGAGAU-ACAa ||| | |:||||| ||| auGUGCAUGCUUCUCUAGUGUg 2 20 150 171 [rn4:10:104640654-104640675:+] 0.5109 123 0 -13.52 -0.1648 MIMAT0003201 rno-miR-382 360654 Dnai2 gcUUAGGUGGUGCUUG-UUGAAg |||| | : |||| ||||| caAAUCAAAAGAGAACUAACUUu 2 21 485 507 [rn4:10:104640989-104641011:+] 0.5109 128 0 -11.51 -0.7342 MIMAT0003203 rno-miR-485 360654 Dnai2 cuuaaGUAGUGCCGGUCGGAGa || ||| ||||||| cggggCA-CACACACAGCCUCa 2 18 239 259 [rn4:10:104640743-104640763:+] 0.5109 147 7 -18.43 -0.9856 MIMAT0003383 rno-miR-497 360654 Dnai2 auGUUUGGUGUCACACG-ACGAc |||:|| || ||||| |||| gcCAAGCCCCA-UGUGCAUGCUu 2 21 140 161 [rn4:10:104640644-104640665:+] 0.5109 138 0 -20.67 -0.1612

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099424 Dnai2 Rattus norvegicus 360654

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dnai2 RAID00314524 rno-miR-376c-3p miRNA MIMAT0003194 Dnai2 mRNA 360654 Prediction 0.1828 Dnai2 RAID00321487 rno-miR-15b-5p miRNA MIMAT0000784 Dnai2 mRNA 360654 Prediction 0.1828 Dnai2 RAID00566597 rno-miR-382-5p miRNA MIMAT0003201 Dnai2 mRNA 360654 Prediction 0.1828 Dnai2 RAID00773300 rno-miR-497-5p miRNA MIMAT0003383 Dnai2 mRNA 360654 Prediction 0.1828 Dnai2 RAID01957383 rno-miR-494-3p miRNA MIMAT0003193 Dnai2 mRNA 360654 Prediction 0.1828 Dnai2 RAID02756850 rno-miR-485-5p miRNA MIMAT0003203 Dnai2 mRNA 360654 Prediction 0.2202 Dnai2 RAID03421418 rno-miR-351-3p miRNA MIMAT0017041 Dnai2 mRNA 360654 Prediction 0.1828 Dnai2 RAID03600604 rno-miR-185-5p miRNA MIMAT0000862 Dnai2 mRNA 360654 Prediction 0.1828 Dnai2 RAID03717914 rno-miR-29a-5p miRNA MIMAT0004718 Dnai2 mRNA 360654 Prediction 0.1828 Dnai2 RAID04004206 rno-miR-143-3p miRNA MIMAT0000849 Dnai2 mRNA 360654 Prediction 0.1828