DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000574 rno-miR-140* 362245 Map1lc3a ggcACCA-AGA-UGGGACACCAu |||| | | : :||||||| acaUGGUAUGUGGAUCUGUGGUc 2 19 366 388 [rn4:3:145760470-145760492:+] 0.6125 148 7 -19.85 -0.8170 MIMAT0000900 rno-miR-298 362245 Map1lc3a ccCUUCUUGUCGG--GAGGAGACGg || :::|:| :|||||||| ugGAUCUGUGGUCAUUUCCUCUGCa 2 22 376 400 [rn4:3:145760480-145760504:+] 0.6125 148 7 -23.99 -1.0855 MIMAT0003162 rno-miR-1* 362245 Map1lc3a ccCAUGUAUUUCUUCAUACACg || | |:| :||||||| uuGU-CCUGACAUGGUAUGUGg 2 21 358 378 [rn4:3:145760462-145760482:+] 0.6125 146 7 -11.58 -0.3805 MIMAT0005280 rno-miR-743b 362245 Map1lc3a agauaaGUCAUACC--ACAGAAAg | ||: || ||||||| ccugccCCGUGGGGUUUGUCUUUu 2 17 238 261 [rn4:3:145760342-145760365:+] 0.6125 147 7 -13.59 -0.9670 MIMAT0012831 rno-miR-544 362245 Map1lc3a cucgaacgauuuuuACGUCUUa ||||||| guggucauuuccucUGCAGAAu 2 9 383 404 [rn4:3:145760487-145760508:+] 0.6125 140 7 -10.24 -0.6822 MIMAT0012844 rno-miR-665 362245 Map1lc3a ucccugGAGU-CGGA-GGACCa |||| |||| ||||| agauugCUCAGGCCUGCCUGGc 2 15 407 428 [rn4:3:145760511-145760532:+] 0.6125 125 0 -22.94 -0.1393 MIMAT0000785 rno-miR-16 362245 Map1lc3a gcgguuauAAAUGCACGA-CGAu |||: ||||| ||| cuugcucuUUUGGGUGCUGGCUg 2 15 188 210 [rn4:3:145760292-145760314:+] 0.6125 122 0 -17.83 -0.2967 MIMAT0000810 rno-miR-31 362245 Map1lc3a gucGAUACGGU-CGUAGAACGGa ||:| |:| ||||||||| ugcCUGU-CUACCCAUCUUGCCc 2 20 273 294 [rn4:3:145760377-145760398:+] 0.6125 156 7 -18.91 -0.3350 MIMAT0000868 rno-miR-193 362245 Map1lc3a ugACCC-UGAAACAUCCGGUCAa |||| | | |:||||||| ccUGGGUAGGUCCUGGGCCAGUc 2 21 157 179 [rn4:3:145760261-145760283:+] 0.6125 155 7 -24.55 -0.2264 MIMAT0003192 rno-miR-379 362245 Map1lc3a ggauGCAAGGUAUCAGAUGGu | || | | ||||||| aggcCCUUGCCU-GUCUACCc 2 18 266 285 [rn4:3:145760370-145760389:+] 0.6125 147 7 -16.39 -0.5468 MIMAT0005314 rno-miR-425 362245 Map1lc3a aguUGCCCU-CA-CUAG-CA-CAGUAa |:|| | || |||| || ||||| gacAUGGUAUGUGGAUCUGUGGUCAUu 2 21 365 391 [rn4:3:145760469-145760495:+] 0.6125 125 0 -18.78 -0.4051

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G058698 Map1lc3a Rattus norvegicus 362245

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Map1lc3a rno-miR-132 364 386 GCUGGUACCG-ACAUCU-GACAAU || |||||: |||:|| |||| UGA-CAUGGUAUGUGGAUCUGUG- Map1lc3a rno-miR-133a 205 235 UGUCGACCA-------ACUU-CCCCUGGUU- :||||| ||:: ||||| ||: -UGGCUGGGUUGGGAGUGGGUGGGGAGCAGC Map1lc3a rno-miR-133b 204 235 -AUCGACCA-------ACUU-CCCCUGGUU- |:||||| ||:: ||||| ||: CUGGCUGGGUUGGGAGUGGGUGGGGAGCAGC Map1lc3a rno-miR-134 116 152 -GGGAGA-----CCA---------GUUGGUCAGUGU- ||||| ||| ||:|||| ||:| CCCCUCCCCCCAGGUAGGGGCCACCAGCCAG-CAUAC Map1lc3a rno-miR-138 136 149 CUAAGUGUUGUGGUCGA ||| :||||| ---CCACCA-GCCAGCA Map1lc3a rno-miR-140* 218 251 ACAGGCACCAA----------GAUGGGACACCAU || |||| ||:||| |||| AGUGGGUGGGGAGCAGCAUCCCUGCCCCGUGGG- Map1lc3a rno-miR-150 199 221 GUGACCAUGUU---CCCAACCCUCU |||:| |||||||||| ---GGGUGCUGGCUGGGUUGGGAGU Map1lc3a rno-miR-151* 375 398 AUGAUCU-GACACUCG----AGGAGCU |:|| ||||| |: ||||| --GUGGAUCUGUG-GUCAUUUCCUCU- Map1lc3a rno-miR-16 172 212 GCGGUUA---UAA-------------AUGCACGAC-GAU- ||||:| :|| |: |||||| ||: GGCCAGUCUUGUUAGGCUUGCUCUUUUGGGUGCUGGCUGG Map1lc3a rno-miR-192 22 43 -CCGACAGUUAAGUAUCCAGUC- ||||| |:||| |||||| UGGCUGGGAGUUCU--GGUCAGG Map1lc3a rno-miR-193 157 180 -GACCCUGAAAC-AUCCGGUCAA ||||| |:||||||| CCUGGGUAGGUCCUGGGCCAGUC Map1lc3a rno-miR-207 209 233 UUCCCUCCUCUCGGUC-CUCUUCG- ||| |:|||: :| |:|:||| -UGGGUUGGGAGUGGGUGGGGAGCA Map1lc3a rno-miR-20b* 376 403 GUCUU--CACGAGUGU----GACGUCA :|| ||| |||: |||||| UGGAUCUGUGGUCAUUUCCUCUGCAGA Map1lc3a rno-miR-214 186 212 GACGGAC-AGA-----CACGGACGACA ||:|| ||| ||||: |||| -GGCUUGCUCUUUUGGGUGCUGGCUGG Map1lc3a rno-miR-217 378 403 -UAGG--UCAGUCAAGGACUACGUCAU |||: :|||| ||||| ||||| GAUCUGUGGUCAUUUCCUC-UGCAGA- Map1lc3a rno-miR-22* 305 330 -UUUCG-AACGGU-GACU-UCUUGA :|:|| ||||| |||| ||:|| UGAGGCUUUGCCCCCUGACAGGACC Map1lc3a rno-miR-24 155 178 GACAAGGACGA---CUUGACUCGGU- ||||| | |||:|||| ---GUCCUGGGUAGGUCCUGGGCCAG Map1lc3a rno-miR-296 9 28 UGUCCUAACUCCCCCCCGGGA ||| ||:|||| |||: -GAGGGGUGGGGGGUGGCUG- Map1lc3a rno-miR-298 224 245 CCUUCUUGUCGGGAGGAGACGG- | ||:|||| ||| ||||| UGGGGAGCAGCA-UCC-CUGCCC Map1lc3a rno-miR-300 247 277 CUUCUCUCGAA-------------CGGGAACGUAU :|:|:|| |||||||| ---UGGGGUUUGUCUUUUUUUUAGGCCCUUGCC-- Map1lc3a rno-miR-31 266 295 GUCGAU-ACGGUC------GUAGAACGGA :|| |||| ||||||||| AGGCCCUUGCCUGUCUACCCAUCUUGCCC Map1lc3a rno-miR-320 288 315 AAGCGGGAGAGU---UGGG--UCGAAAA |:|||| |||| |||: :||||| CUUGCCC-CUCAUCCACCUGAGGCUUUG Map1lc3a rno-miR-324-3p 138 174 -GGUC-GUCGU--------GGACCCCGUCA---CC- |||| ||||| |||||| :|| || ACCAGCCAGCAUACCAAGUCCUGGGUAGGUCCUGGG Map1lc3a rno-miR-327 281 311 -UGGG-AGUACGGGGAGU--------UCC- |||| || ||||||||| ||| UACCCAUCUUGCCCCUCAUCCACCUGAGGC Map1lc3a rno-miR-329 198 223 UUUUUCCA--AUCGACCCA-----CACAA :||| |:||||||| ||| ---UGGGUGCUGGCUGGGUUGGGAGUGG- Map1lc3a rno-miR-331 157 176 AAGAUCCUAUCCGGGUCCCCG- ||:|| ||||:|| |||| -CCUGGG-UAGGUCCU-GGGCC Map1lc3a rno-miR-333 126 155 UUUUCAU----------UGAUCGUGUGGUG |:||| :| ||||:|||| -CAGGUAGGGGCCACCAGCCAGCAUACCAA Map1lc3a rno-miR-336 205 228 UCUGAUCUAUACCUU-CCCACU- |:||:|:| |||: |||||: UGGCUGGGUUGGGAGUGGGUGGG Map1lc3a rno-miR-339 28 57 ACUCGAGGACC--UCCU------GUCCCU- |||:| |||| ||| |||||| GGAGUU-CUGGUCAGGUUCUCCCCAGGGAG Map1lc3a rno-miR-343 195 221 -AGACCCG----UGUGCCU-CCCUCU |:||||: :| || ||||| UUUUGGGUGCUGGCUGGGUUGGGAGU Map1lc3a rno-miR-346 89 107 UCUCCGUCCGUGAGUCCGUCUGU || || |:||||||| --CGGGUGGA--UUAGGCAGAG- Map1lc3a rno-miR-34a 296 318 UUGUUGGUCGAUUCUGUGACGGU || ||| ||:||:| |||| -UCAUCCACCUGAGGCUUUGCCC Map1lc3a rno-miR-34b 407 428 GUUAGUCGAUUAAUGUGACGGAU- :||: ||| :| ||||||: AGAUU-GCUCAG-GC-CUGCCUGG Map1lc3a rno-miR-351 22 57 GUCCGAGUUUC---------CCG--AGGAGUCCCU- |||| ::|| ||: ||| |||||| -UGGCUGGGAGUUCUGGUCAGGUUCUCCCCAGGGAG Map1lc3a rno-miR-363-5p 288 308 UUUAACGUAGCACUAGGUGGGC- |||| |||||||:| --CUUGCCCCUC-AUCCACCUGA Map1lc3a rno-miR-370 37 60 UUGGUCCAAGGUGGGGUCGU-CCG- :|||||||: |||||| : ||: -GUCAGGUUCU-CCCCAGGGAGGUC Map1lc3a rno-miR-378 198 221 UGUGUCCUGGACC---UCAGUCCUC- :|| |||| :||::|||| ---UGGGUGCUGGCUGGGUUGGGAGU Map1lc3a rno-miR-412 204 230 UGCCGAUCA---CCUGGUCCACUUCA :||||:| ||| ::|||| | CUGGCUGGGUUGGGAGUGGGUGGGGA Map1lc3a rno-miR-449 313 335 -UGGUCGAUUGUUAUGUGACGGU :|| ||:||| || ||||| UGCCCCCUGACAGGAC-CUGCCC Map1lc3a rno-miR-483 2 26 UGUUCUGCCCUCCCC--UCCUCACU- ||||| ||||||| :||:|||: UCAAGA--GGAGGGGUGGGGGGUGGC Map1lc3a rno-miR-485 159 183 -CUUAAGUA-GUGCCGGUCGGAGA | | :| | ||||||:||: UGGGUAGGUCCUGGGCCAGUCUUG Map1lc3a rno-miR-132 364 386 gCUGGUACCG-ACAUCU-GACAau || |||||: |||:|| |||| tGA-CATGGTATGTGGATCTGTgg Map1lc3a rno-miR-133a 209 233 uguCGAC---CAACUUCCCCUGGUu |:|| || |: ||||| || tggGTTGGGAGTGGGTGGGGAGCAg Map1lc3a rno-miR-133b 205 233 AUCGA-CCAACUU-------CCCCUGGUu |:||| |||||:: ||||| || TGGCTGGGTTGGGAGTGGGTGGGGAGCAg Map1lc3a rno-miR-134 122 147 GGGAGACCA-----GUUGGUCAGUgu ||| | ||| | ||||| || CCCCCAGGTAGGGGCCACCAGCCAgc Map1lc3a rno-miR-140* 359 388 ACAGG-C---ACCA-AGA-UGGGACACCAu ||||| | |||| | | : :||||||| TGTCCTGACATGGTATGTGGATCTGTGGTc Map1lc3a rno-miR-140* 228 251 acaggcaccaaGAUGGGACACCau ||:||| |||| gagcagcatccCTGCCCCGTGGgg Map1lc3a rno-miR-150 202 220 guGACCAUGUUCCCAACCCUCu |||| | |||||||||| tgCTGG--C-TGGGTTGGGAGt Map1lc3a rno-miR-151* 373 398 augAUCU-GACAC---UCGAGGAGcu |:|| ||||| | :||||| atgTGGATCTGTGGTCATTTCCTCtg Map1lc3a rno-miR-16 188 210 gcgguuauAAAUGCACGA-CGAu |||: ||||| ||| cttgctctTTTGGGTGCTGGCTg Map1lc3a rno-miR-192 23 41 CCGACAGUUAAGUAUCCAGUC ||||| |:||| | |||||| GGCTGGGAGTTC-T-GGTCAG Map1lc3a rno-miR-193 158 179 GACCC-UGAAACAUCCGGUCAa ||||| | | |:||||||| CTGGGTAGGTCCTGGGCCAGTc Map1lc3a rno-miR-207 213 234 uuCCCUCCUCUCGGUCCUCUUCG |||| | |:|: :|||| ||| ttGGGA-GTGGGTGGGGAGCAGC Map1lc3a rno-miR-20b* 378 402 gucuuCACGAGU----GUGACGUCa ||| ||| | |||||| gatctGTGGTCATTTCCTCTGCAGa Map1lc3a rno-miR-214 171 195 gaCGGACAG-ACA---CGGACGAca ||| ||| ||| ||:|||| ggGCCAGTCTTGTTAGGCTTGCTct Map1lc3a rno-miR-217 379 403 UAG--GUCAGUCAAGGACUACGUCau ||| ::|||| ||||| ||||| ATCTGTGGTCATTTCCT-CTGCAGaa Map1lc3a rno-miR-22* 306 329 uUUCG-AAC-GGUGACU-UCUUGa |:|| ||| || |||| ||:|| gAGGCTTTGCCCCCTGACAGGACc Map1lc3a rno-miR-24 152 176 gacaAGGA-CGA--CUUGACUCGGU |||| | | | |||:|||| caagTCCTGGGTAGGTCCTGGGCCA Map1lc3a rno-miR-296 5 25 UGUCCUAACUCCCCCCCggga | |||| |: |||||| AGAGGAGGGGTGGGGGGtggc Map1lc3a rno-miR-298 377 400 CCUUCUUGUCGG--GAGGAGACGg ||| :::|:| :|||||||| GGATCTGTGGTCATTTCCTCTGCa Map1lc3a rno-miR-300 257 278 cuucucucgaaCGGGAACGUAu |||||||| | cttttttttagGCCCTTGCCTg Map1lc3a rno-miR-31 268 294 gucGAUACGGUC------GUAGAACGGa || |||| | ||||||||| gccCT-TGCCTGTCTACCCATCTTGCCc Map1lc3a rno-miR-320 271 292 aAGCGGGAGAGUUGGGUCGAAaa |:| ||| || ||||| ||| cTTG-CCTGTCTACCCATCTTgc Map1lc3a rno-miR-324-3p 157 180 GG--UCGUCGUGGACCCCGUCAcc || :|:|| |||||| |||| CCTGGGTAGGTCCTGGGCCAGTct Map1lc3a rno-miR-327 282 301 UGGG-AGUACGGGGAGUucc |||| || ||||||||| ACCCATCTTGCCCCTCAtcc Map1lc3a rno-miR-329 206 229 uuuuuCCAAUC--GACCCACACaa ||||:| |||||| | ggctgGGTTGGGAGTGGGTGGGga Map1lc3a rno-miR-331 155 175 aAGAUCCUAUCCGGGUCCCcg || ||:||||:|| ||| gTCCTGGGTAGGTCCTGGGcc Map1lc3a rno-miR-333 135 154 uuuucaUUGAUCGUGUGGUg |:| ||||:|||| gccaccAGCCAGCATACCAa Map1lc3a rno-miR-339 10 30 aCUCGAGGACCUCCUGUCCCU |:| | ||: |:| |||| aGGGGTGGGGGGTGGCTGGGA Map1lc3a rno-miR-343 196 220 AGACCCGUG--UG-CCU--CCCUCu |:||||::| :| ||: ||||| TTTGGGTGCTGGCTGGGTTGGGAGt Map1lc3a rno-miR-346 84 107 ucuccGUCCG-UGAGUCCGUCUgu |:||: : |:||||||| ggcccCGGGTGGATTAGGCAGAga Map1lc3a rno-miR-34a 295 317 uuGUUGGUCGAUUCUGUGACGGu || ||| ||:||:| :|||| ctCATCCACCTGAGGCTTTGCCc Map1lc3a rno-miR-34b 404 426 guuagucgauuaauguGACGGAu |||||| taaagattgctcaggcCTGCCTg Map1lc3a rno-miR-351 34 55 GUCCGAGUUUCCCGAGGAGUCCCU | || || |:| |||| |||||| CTGG-TC-AGGTTCTCCCCAGGGA Map1lc3a rno-miR-363-5p 286 306 uuuAACGUAGCACUAGGUGGGC |||| | | |||||||:| atcTTGC-CCCTCATCCACCTG Map1lc3a rno-miR-370 36 58 uugGUCCAAGGUGGGGU-CGUCCg |||||||: ||||| | ||| ggtCAGGTTCT-CCCCAGGGAGGt Map1lc3a rno-miR-378 201 219 uguGUCCUGGACCUCAGUCCUC | || |||| ||::|||| gtgCTGG--CTGG-GTTGGGAG Map1lc3a rno-miR-449 314 334 uGGUCGAUUGUUAUGUGACGGu || ||:|||: || ||||| gCCCCCTGACAGGAC-CTGCCc Map1lc3a rno-miR-485 160 182 CUUAAGUAGUG-CCGGUCGGAga |::| :|| : ||||||:|| GGGTAGGTCCTGGGCCAGTCTtg Map1lc3a rno-miR-138 137 144 --------------------------CUAAGUGUUGUGGUCGA |:| : : ||||||| CAGAGAUGUGACACCCCCUCCCCCCAGGUAGGGGCCACCAGCC Map1lc3a rno-miR-140* 381 388 -------------ACAGGC----ACCA-AGAUG-GGACACCAU ||||| |||| | |: :||||||| GGCUGGCUCCCCUUGUCCUGACAUGGUAUGUGGAUCUGUGGUC Map1lc3a rno-miR-150 213 220 GUGA------------------CCAUGUU---CCCAACCCUCU |||:| |||||||||| UCUUGUUAGGCUUGCUCUUUUGGGUGCUGGCUGGGUUGGGAGU Map1lc3a rno-miR-193 172 179 ---------------------GACCCUGAAAC-AUCCGGUCAA ||||| |:||||||| CACCAGCCAGCAUACCAAGUCCUGGGUAGGUCCUGGGCCAGUC Map1lc3a rno-miR-298 393 400 -------------------CCUUCUUGUCG--GGAGGAGACGG ||| : |: ::|||||||| UUGUCCUGACAUGGUAUGUGGAUCUGUGGUCAUUUCCUCUGCA Map1lc3a rno-miR-31 287 294 G--------------UCGAU-ACGGUC------GUAGAACGGA :|| |||| | ||||||||| UUUGUCUUUUUUUUAGGCCCUUGCCUGUCUACCCAUCUUGCCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Map1lc3a RAID00205868 rno-miR-326-5p miRNA MIMAT0017028 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID00287150 rno-miR-193b-3p miRNA MIMAT0035734 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID00680624 rno-miR-16-5p miRNA MIMAT0000785 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID00928913 rno-miR-140-3p miRNA MIMAT0000574 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID01160712 rno-miR-193a-3p miRNA MIMAT0000868 Map1lc3a mRNA 362245 Prediction 0.2202 Map1lc3a RAID01310629 rno-miR-3573-5p miRNA MIMAT0017856 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID01769544 rno-miR-31a-5p miRNA MIMAT0000810 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID01855797 rno-miR-423-5p miRNA MIMAT0017305 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID01864292 rno-miR-3065-3p miRNA MIMAT0017840 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID02175300 rno-miR-298-5p miRNA MIMAT0000900 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID02339354 rno-miR-328a-5p miRNA MIMAT0017029 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID02345175 rno-miR-425-5p miRNA MIMAT0005314 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID02588935 rno-miR-544-3p miRNA MIMAT0012831 Map1lc3a mRNA 362245 Prediction 0.1828 Map1lc3a RAID03446539 rno-miR-379-5p miRNA MIMAT0003192 Map1lc3a mRNA 362245 Prediction 0.1828