DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000557 rno-miR-325-5p 363982 Yod1 ugugaaUGACUCGUGGAUGAUcc |:|| | :||||||| cggagaAUUG-GAGCCUACUAcc 3 18 8 29 [rn4:13:43654999-43655020:+] 0.7561 135 0 -14.16 -0.1437 MIMAT0004639 rno-miR-325-3p 363982 Yod1 aacuauccuccacgaGUUAUUu |||||| aggcucuggguuuucCAAUAAg 2 8 43 64 [rn4:13:43655034-43655055:+] 0.7561 120 6 -11.31 -0.1598 MIMAT0000610 rno-miR-352 363982 Yod1 augauACGUUGGAUGAU-GAGa || |:||||||| ||| agaauUGGAGCCUACUACCUCa 2 17 11 32 [rn4:13:43655002-43655023:+] 0.7561 132 0 -19.55 -1.2038 MIMAT0000783 rno-miR-10b 363982 Yod1 uguguuuaagccaaGAUGUCcc |||||| agcuauucauaaccCUACAGaa 3 9 63 84 [rn4:13:43655054-43655075:+] 0.7561 120 0 -7.79 -0.4431 MIMAT0004714 rno-miR-26b* 363982 Yod1 cucGGU-UCAUUACCUCUUGUcc |:| || ||| |||||| accCUACAG-AAU--AGAACAca 3 20 74 93 [rn4:13:43655065-43655084:+] 0.7561 125 0 -7.16 -0.3508 MIMAT0004718 rno-miR-29a* 363982 Yod1 gacuuGUGGUUUU--CUUUAGUCa ::::||:| ||||||| uuccuUGUUAAGAUUAAAAUCAGu 2 18 142 165 [rn4:13:43655133-43655156:+] 0.5839 144 7 -11.12 -1.0042 MIMAT0004720 rno-miR-30e* 363982 Yod1 cgaCAU-UUGUAGGCUGACUUUc ||| :|| | ||||||| ccaGUAUGAC-UGACACUGAAAu 2 20 121 142 [rn4:13:43655112-43655133:+] 0.5839 144 7 -10.39 -0.7886 MIMAT0004722 rno-miR-30d* 363982 Yod1 cgUCGUU-UGUAGAC--UGACUUUc | ||: |:: ||| ||||||| aaACCAGUAUGACUGACACUGAAAu 2 21 118 142 [rn4:13:43655109-43655133:+] 0.5839 150 7 -13.49 -0.7886 MIMAT0000809 rno-miR-30a* 363982 Yod1 cgacGUU-UGUAGGC--UGACUUUc ||: |:: |:| ||||||| aaacCAGUAUGACUGACACUGAAAu 2 19 118 142 [rn4:13:43655109-43655133:+] 0.5839 144 7 -9.97 -0.7886 MIMAT0004727 rno-miR-106b* 363982 Yod1 cgucgUUCAUGGGUGUCACGCc :| || |||||:| guuaaGAUUAAAAUCAGUGUGc 2 18 148 169 [rn4:13:43655139-43655160:+] 0.5839 125 0 -12.02 -0.1245 MIMAT0004728 rno-miR-124* 363982 Yod1 uaguuccaggcgacaCUUGUGc |||||| uaacccuacagaauaGAACACa 2 8 72 93 [rn4:13:43655063-43655084:+] 0.7561 120 6 -7.46 -0.4596 MIMAT0004730 rno-miR-125b-3p 363982 Yod1 ucGAGGGUU-CUCGG-----AUUGGGca :|:|||| |||: |||||| guUUUCCAAUAAGCUAUUCAUAACCCua 3 21 52 79 [rn4:13:43655043-43655070:+] 0.7561 126 0 -16.14 -0.2094 MIMAT0004732 rno-miR-135a* 363982 Yod1 aaaguaccgaagguaGGGAUGu |||||| auaagcuauucauaaCCCUACa 2 8 60 81 [rn4:13:43655051-43655072:+] 0.7561 120 6 -18.29 -0.2922 MIMAT0003115 rno-miR-207 363982 Yod1 uucccuccucucGGUCCUCUUcg :| |||||| -------ucuguUCCGGAGAAuu 3 12 1 16 [rn4:13:43654992-43655007:+] 0.7561 123 0 -10.39 -0.1119 MIMAT0005318 rno-miR-471 363982 Yod1 caCUUUUCGUGAUAUGAUGCAu ||| | | |||||| | gaGAAUUGGAGCCUACUACCUc 2 21 10 31 [rn4:13:43655001-43655022:+] 0.7561 120 0 -8.23 -0.1418 MIMAT0000562 rno-let-7d 363982 Yod1 uugauACGUUGGAUGAUGGAGa || |:||||||||||| agaauUGGAGCCUACUACCUCa 2 18 11 32 [rn4:13:43655002-43655023:+] 0.7561 173 7 -25.41 -1.2930 MIMAT0000774 rno-let-7a 363982 Yod1 uugauAUGUUGGAUGAUGGAGu |: |:||||||||||| agaauUGGAGCCUACUACCUCa 2 18 11 32 [rn4:13:43655002-43655023:+] 0.7561 169 7 -27.99 -1.2946 MIMAT0000775 rno-let-7b 363982 Yod1 uuggugugUUGGAUGAUGGAGu |:||||||||||| agaauuggAGCCUACUACCUCa 2 15 11 32 [rn4:13:43655002-43655023:+] 0.7561 166 7 -25.57 -1.2953 MIMAT0000776 rno-let-7c 363982 Yod1 uugguAUGUUGGAUGAUGGAGu |: |:||||||||||| agaauUGGAGCCUACUACCUCa 2 18 11 32 [rn4:13:43655002-43655023:+] 0.7561 169 7 -26.57 -1.2946 MIMAT0000777 rno-let-7e 363982 Yod1 uugauAUGUUGGAGGAUGGAGu |: |:||| ||||||| agaauUGGAGCCUACUACCUCa 2 18 11 32 [rn4:13:43655002-43655023:+] 0.7561 161 7 -23.36 -1.2946 MIMAT0000778 rno-let-7f 363982 Yod1 uugauAUGUUAGAUGAUGGAGu |: |: |||||||||| agaauUGGAGCCUACUACCUCa 2 18 11 32 [rn4:13:43655002-43655023:+] 0.7561 161 7 -22.48 -1.2953 MIMAT0000779 rno-let-7i 363982 Yod1 uugUCGUGUUUGAUGAUGGAGu | :: |: |||||||||| agaAUUGGAGCCUACUACCUCa 2 20 11 32 [rn4:13:43655002-43655023:+] 0.7561 159 7 -20.29 -1.2961 MIMAT0000790 rno-miR-21 363982 Yod1 aguuguagucAGACUAUUCGAu || ||||||| cucuggguuuUCCAAUAAGCUa 2 13 46 67 [rn4:13:43655037-43655058:+] 0.7561 144 7 -11.57 -1.1675 MIMAT0000795 rno-miR-25 363982 Yod1 agUCUGGCUCU-GUU-CACGUUac |||:: | | ||: |||||| uaAGAUUAAAAUCAGUGUGCAAgu 3 21 150 173 [rn4:13:43655141-43655164:+] 0.5839 134 0 -12.14 -0.1510 MIMAT0000811 rno-miR-32 363982 Yod1 acguugaaucaUUACACGUUau |:||||||| agauuaaaaucAGUGUGCAAgu 3 12 152 173 [rn4:13:43655143-43655164:+] 0.5839 131 0 -10.40 -0.1467 MIMAT0000812 rno-miR-33 363982 Yod1 acgUUACGUUGAUGUUACGug ||| ||| ||||||| cagAAUAGAAC-ACAAUGCuu 3 19 80 99 [rn4:13:43655071-43655090:+] 0.7561 140 0 -10.80 -0.1154 MIMAT0000816 rno-miR-92a 363982 Yod1 guccggcccuGUU-CACGUUau ||: |||||| agauuaaaauCAGUGUGCAAgu 3 12 152 173 [rn4:13:43655143-43655164:+] 0.5839 122 0 -8.25 -0.1539 MIMAT0000819 rno-miR-98 363982 Yod1 uugUUAUGUUGAAUGAUGGAGu | |: |:| ||||||||| agaAUUGGAGCCUACUACCUCa 2 20 11 32 [rn4:13:43655002-43655023:+] 0.7561 163 7 -19.36 -1.2946 MIMAT0000839 rno-miR-133a 363982 Yod1 gucgaccaacuuccCCUGGUuu |||||| agaacacaaugcuuGGACCAuc 3 9 86 107 [rn4:13:43655077-43655098:+] 0.6700 120 0 -9.23 -0.1924 MIMAT0000846 rno-miR-141 363982 Yod1 gguagaAAUGGUCUGUCACAau ||| | |||||| uuaagaUUA-AAAUCAGUGUgc 3 17 149 169 [rn4:13:43655140-43655160:+] 0.5839 122 0 -8.13 -0.2930 MIMAT0000871 rno-miR-196a 363982 Yod1 gggUUGUUGUACUU---UGAUGGAu :| ||: ||: ||||||| ccgGAGAAUUGGAGCCUACUACCUc 2 20 7 31 [rn4:13:43654998-43655022:+] 0.7561 142 7 -15.57 -1.2955 MIMAT0000872 rno-miR-199a-5p 363982 Yod1 cuUGUCCAU-CAGACUUGUGACcc || ||| | ||| |||||| aaACCAGUAUGACUG-ACACUGaa 3 22 118 140 [rn4:13:43655109-43655131:+] 0.5839 138 0 -15.62 -0.1123 MIMAT0000874 rno-miR-200a 363982 Yod1 uguAGCAA---UGGUCU--GUCACAau |:||| |::| | |||||| uccUUGUUAAGAUUAAAAUCAGUGUgc 3 20 143 169 [rn4:13:43655134-43655160:+] 0.5839 125 0 -10.37 -0.2930 MIMAT0000892 rno-miR-223 363982 Yod1 ccccauaaacuguUUGACUGu :|||||| cuuaaaccaguauGACUGACa 2 9 115 135 [rn4:13:43655106-43655126:+] 0.5839 124 6 -11.18 -0.1941 MIMAT0004742 rno-miR-296 363982 Yod1 ccucUCGG-AGGUGGGUUGGGAg |||: |:|| :|||||| aauaAGCUAUUCA--UAACCCUa 2 19 59 79 [rn4:13:43655050-43655070:+] 0.7561 134 6 -16.15 -0.2208 MIMAT0001082 rno-miR-196b 363982 Yod1 gggUUGUUGUCCUU---UGAUGGAu :| ||: |||: ||||||| ccgGAGAAUUGGAGCCUACUACCUc 2 20 7 31 [rn4:13:43654998-43655022:+] 0.7561 150 7 -18.56 -1.2962 MIMAT0003126 rno-miR-133b 363982 Yod1 aucgaccaacuuccCCUGGUuu |||||| agaacacaaugcuuGGACCAuc 3 9 86 107 [rn4:13:43655077-43655098:+] 0.6700 120 0 -9.23 -0.1924 MIMAT0003210 rno-miR-363 363982 Yod1 augUCUACCUAUGG---CACGUUaa |||| | |:| |||||| uuaAGAUUAAAAUCAGUGUGCAAgu 3 20 149 173 [rn4:13:43655140-43655164:+] 0.5839 130 0 -9.99 -0.1510 MIMAT0005303 rno-miR-196c 363982 Yod1 gggUUGUUGUGCUU---UGAUGGAu :| ||: ||: ||||||| ccgGAGAAUUGGAGCCUACUACCUc 2 20 7 31 [rn4:13:43654998-43655022:+] 0.7561 142 7 -15.19 -1.2962 MIMAT0005340 rno-miR-92b 363982 Yod1 ccuccggcccugCUCACGUUau | |||||| agauuaaaaucaGUGUGCAAgu 3 11 152 173 [rn4:13:43655143-43655164:+] 0.5839 122 0 -6.72 -0.1539

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G100516 Yod1 Rattus norvegicus 363982

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Yod1 RAID00207915 rno-miR-223-3p miRNA MIMAT0000892 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID00255633 rno-let-7e-5p miRNA MIMAT0000777 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID00322153 rno-miR-196b-5p miRNA MIMAT0001082 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID00410800 rno-miR-363-3p miRNA MIMAT0003210 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID00442261 rno-let-7a-5p miRNA MIMAT0000774 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID00600096 rno-let-7f-5p miRNA MIMAT0000778 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID00773925 rno-let-7b-5p miRNA MIMAT0000775 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID00818142 rno-miR-196c-5p miRNA MIMAT0005303 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01063467 rno-miR-92b-3p miRNA MIMAT0005340 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01096865 rno-let-7c-5p miRNA MIMAT0000776 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01109423 rno-let-7d-5p miRNA MIMAT0000562 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01129026 rno-miR-199a-5p miRNA MIMAT0000872 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01389021 rno-miR-32-5p miRNA MIMAT0000811 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01400810 rno-miR-200a-3p miRNA MIMAT0000874 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01436047 rno-miR-92a-3p miRNA MIMAT0000816 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01712008 rno-miR-33-5p miRNA MIMAT0000812 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID01736141 rno-miR-21-5p miRNA MIMAT0000790 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID02487782 rno-miR-25-3p miRNA MIMAT0000795 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID02588067 rno-miR-133b-3p miRNA MIMAT0003126 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID02652407 rno-let-7i-5p miRNA MIMAT0000779 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID02664772 rno-miR-133a-3p miRNA MIMAT0000839 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID02929312 rno-miR-196a-5p miRNA MIMAT0000871 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID03040521 rno-miR-296-3p miRNA MIMAT0004742 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID03232285 rno-miR-141-3p miRNA MIMAT0000846 Yod1 mRNA 363982 Prediction 0.1828 Yod1 RAID03835310 rno-miR-98-5p miRNA MIMAT0000819 Yod1 mRNA 363982 Prediction 0.1828