DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Urm1; URM1 rno-let-7b 98 119 UUGGUGUGUUGGAUGAUGGAGU- ||| :| :||||| |||| -UCCAGGCUGCCUACAA-CUCAU Urm1; URM1 rno-let-7c 98 119 UUGGUAUGUUGGAUGAUGGAGU- ||| :| :||||| |||| -UCCAGGCUGCCUACAA-CUCAU Urm1; URM1 rno-miR-107 77 109 ACUA-UCG-GGACA-UGUUA------CGACGA ||| :|| |||| ||| ||||| AGAUGGGCUCCUGAGACACUCUCCAGGCUGCC Urm1; URM1 rno-miR-125a 161 183 -GUGUCCAAUUUCCCAGAGUCCCU || ||| : ||| ||||| GCAGAGGGGGGCGGGCCUCAGC-- Urm1; URM1 rno-miR-127 69 92 -UCGGUUCGAGUCUGCCU-AGG-CU- :|||| | ||||:||: ||| || AGGCCA--C-CAGAUGGGCUCCUGAG Urm1; URM1 rno-miR-133a 274 307 -UGUCGACCAACUUCCC----------CUGGUU- |||||||| ||| |||:|: AACAGCUGGCCUU-GGGCAAAUAAAGAGACUAGG Urm1; URM1 rno-miR-133b 146 176 -AUCGA--------CCAACUUCCCCUGGUU |||| || ||:||||:| : GUAGCCUAACUUUAGGCAGAGGGGGGCGGG Urm1; URM1 rno-miR-150 102 131 GUGACC-AUGUUCC------CAACCCUCU :||| ||||| ||||||:| GGCUGCCUACAACUCAUUCUGUUGGGGGU Urm1; URM1 rno-miR-151* 64 92 AUG-AUCUGAC-----ACUCGAGGAGCU- || |||:| ||:|||||| || CACAUAGGCCACCAGAUGGGCUCCU-GAG Urm1; URM1 rno-miR-185 80 103 -CUUGACGGAAA----GAGAGGU- |::|| ||| ||||||| UGGGCU-CCUGAGACACUCUCCAG Urm1; URM1 rno-miR-191 101 127 -UCGACGAAAACCC--UAAGGCAAC- :||||| ||||:|||| AGGCUGCCUACAACUCAUUCUGUUGG Urm1; URM1 rno-miR-205 99 146 -GUCUG--------------AGGCCACCUUA---------CUUCCU |||:| ||:| |||:: |||||| CCAGGCUGCCUACAACUCAUUCUGUUGGGGGUAGAAAAUGGAAGGAA Urm1; URM1 rno-miR-211 158 177 -UCCGUUUCCUACUGUUUCCCUU |||||:||| |:| ||| UAGGCAGAGGGGGGC---GGGC- Urm1; URM1 rno-miR-217 191 216 UAGGUCAGUCAAGGACUA----CGUCAU ||||| ||||||| |||| CUCCAGGC--UUCCUGAAACAAGCAGG- Urm1; URM1 rno-miR-224 247 266 AUUUGCCUUGGUGAUCACUGAAC :|||||: ||:| ||||| ---CUGGAACU-CUGGAGACUUC Urm1; URM1 rno-miR-24 268 286 GACAAGGACGAC-UUGACUCGGU ||||| |:||| ||| ----GCCUGCAACAGCUG-GCCU Urm1; URM1 rno-miR-28 63 90 GAGU-UAUCUGAC-----ACUCGAGGAA || ||||:| ||:|||||| -CCACAUAGGCCACCAGAUGGGCUCCUG Urm1; URM1 rno-miR-296 157 180 UGUCC-UAACUCCCC-CCCGGGA :||| | |:|||| |||||: UUAGGCAGAGGGGGGCGGGCCUC Urm1; URM1 rno-miR-30b 297 316 UCGACUCACAUCCUACAAAUGU ||| |||| ||||||| ---AGAGACUAGGUUGUUUACU Urm1; URM1 rno-miR-30c 277 316 -CGAC---------------UCUCACAUCCUACAAAUGU |||| |||| |||| ||||||| AGCUGGCCUUGGGCAAAUAAAGAGACUAGGUUGUUUACU Urm1; URM1 rno-miR-324-3p 159 176 GGUCGUCGUGGACCCCGUCACC :|||| |||||:| -AGGCAGAGG--GGGGCGGG-- Urm1; URM1 rno-miR-324-5p 148 175 UGUGGUUA------CGGGAUCCCCUACGC- :|| || |||||: ||| -AGCCUAACUUUAGGCAG-AGGGGG-GCGG Urm1; URM1 rno-miR-328 141 176 UGCCUUC-------------CCGUCUCUCCCGGUC- ||||| |||||||:||| |:| -AGGAAGUAGCCUAACUUUAGGCAGAGGGGGGCGGG Urm1; URM1 rno-miR-340 159 177 -CCGAUAUUUCAUUGACUCUGCCU- ||| |:|| |:|:|||: AGGC---AGAGG----GGGGCGGGC Urm1; URM1 rno-miR-343 159 177 AGACCCGUGUGCCUCC-CUCU |||| | ||:|| |:| ---AGGCAGAGGGGGGCGGGC Urm1; URM1 rno-miR-345 160 185 -CGUGACCUGAUC-CCC--AGUCGU- ||| ||: :| ||| |||||| GGCAGAGGGG-GGCGGGCCUCAGCAU Urm1; URM1 rno-miR-346 166 200 -UCUCCGUCCGUGAGUCC-----------GUCUGU :|:|||:||| ||||| |||:| GGGGGGCGGGC-CUCAGCAUGUGUAACUCCAGGCU Urm1; URM1 rno-miR-347 141 175 ACC--CGCUGGG------------UCUCCCUGU- || |: :||: ||:|||:|: AGGAAGUAGCCUAACUUUAGGCAGAGGGGGGCGG Urm1; URM1 rno-miR-34a 69 103 -UUGUUGGUC--------GAUUCUGUGAC-GGU- ::| ||||| ||:||||||| ||| AGGCCACCAGAUGGGCUCCUGAGACACUCUCCAG Urm1; URM1 rno-miR-351 157 183 -GUCCGAG-UUUCCCGA--GGAGUCCCU :|||| :::|||| |||||| UUAGGCAGAGGGGGGCGGGCCUCAGC-- Urm1; URM1 rno-miR-352 93 118 AUGAUA----CGUUGGAUGAUGAGA ||| || :||||| |||| CACUCUCCAGGCUGCCUACAACUCA Urm1; URM1 rno-miR-370 23 47 UUGGUCCA-AGGUGGGGUCGUCCG- |||| |: ||||::|| ||| -CCCAGCCCUUGACCCUGGCUGGCC Urm1; URM1 rno-miR-422b 174 206 -CGGA-----AGAC--UGAGGUUC--AGGUCA |||| | || ||||||:| ||| | GGCCUCAGCAUGUGUAACUCCAGGCUUCCUGA Urm1; URM1 rno-miR-540 23 49 -GGUCCU-AGCUGGA---GACUGGA- |||| |:|||| |||:||| CCCAGCCCUUGACCCUGGCUGGCCUC Urm1; URM1 rno-miR-664 121 142 AUCCGACCCCUCAU---UUACUUAU |:||||| ||| ||||:| --UGUUGGGG-GUAGAAAAUGGAA- Urm1; URM1 rno-miR-92 167 192 GUCCGGCCC-----UGUUCACGUUAU :|| |||| :|| |||:|| GGGGGCGGGCCUCAGCAUGUGUAAC- Urm1; URM1 rno-let-7b 93 117 uUGGUGUGUUGGAU-GAUG--GAGU ||: : ||: ||: |||| |||| cACTCTCCAGGCTGCCTACAACTCA Urm1; URM1 rno-let-7c 93 117 uUGGUAUGUUGGAU-GAUG--GAGU ||: | ||: ||: |||| |||| cACTCTCCAGGCTGCCTACAACTCA Urm1; URM1 rno-miR-125a 162 184 GUGUCCAAUUUCCCAGAGUCccu || ||| :: ||| ||||| CAGAGGGGGGCGGGCCTCAGcat Urm1; URM1 rno-miR-127 70 89 uCGGUUCGAGUCUG-CCUAGGcu |||| | ||||: || ||| gGCCA--C-CAGATGGGCTCCtg Urm1; URM1 rno-miR-133a 275 305 UGUCGACC--AAC-------UUCCCCUGGUu |||||||| ||| || | |||:| ACAGCTGGCCTTGGGCAAATAAAGAGACTAg Urm1; URM1 rno-miR-133b 152 175 AUCGA---CCAACUUCCCCUGguu || || || ||:||||:| TAACTTTAGGCAGAGGGGGGCggg Urm1; URM1 rno-miR-151* 73 91 aUGAUCUGACACUCGAGGAgcu || ||| ||:|||||| cACCAGA---TGGGCTCCTgag Urm1; URM1 rno-miR-185 84 101 cuugacggaaaGAGAGGU ||||||| ctcctgagacaCTCTCCA Urm1; URM1 rno-miR-191 102 125 uCGACGAA--AACCCUAAGGCAAC ||||| | ||||:|||| gGCTGCCTACAACTCATTCTGTTG Urm1; URM1 rno-miR-205 116 144 GUCUGA-GGCCACC-----UUA-CUUCCU || || ::|| || ||| |||||| CATTCTGTTGGGGGTAGAAAATGGAAGGA Urm1; URM1 rno-miR-211 148 170 UCCGUUUCCUA-CUGUUUCCCuu || | || | |:||:|||| AGCCTAACTTTAGGCAGAGGGgg Urm1; URM1 rno-miR-217 191 216 uAGGUCAGUCAAGGAC----UACGUCau ||||| | |||||| | |||| cTCCAGGC--TTCCTGAAACAAGCAGga Urm1; URM1 rno-miR-224 244 265 auuugCCUUGGUGAUCACUGAAc |||||: ||:| ||||| cttctGGAACT-CTGGAGACTTc Urm1; URM1 rno-miR-24 264 285 gacAAGGACG-ACUUGACUCGGu | ||||| |:||| ||| tcaTGCCTGCAACAGCTG-GCCt Urm1; URM1 rno-miR-28 62 89 GAGU-UAUCU----GAC-ACUCGAGGAa | || ||||: | | ||:|||||| CCCACATAGGCCACCAGATGGGCTCCTg Urm1; URM1 rno-miR-30b 294 315 ucgaCUCACAUCCUACAAAUGu ||| |||| ||||||| taaaGAGACTAGGTTGTTTACt Urm1; URM1 rno-miR-30c 293 315 cgacUCUCACAUCCUACAAAUGu |||| |||| ||||||| ataaAGAGACTAGGTTGTTTACt Urm1; URM1 rno-miR-324-3p 143 167 ggUCGUCG---UGGACCCCGUCACC ||:||| ||:| ||||| || gaAGTAGCCTAACTTTAGGCAGAGG Urm1; URM1 rno-miR-328 158 179 ugCCUUCCCGUCUCUCCCGGuc || || | :|:| ||||| taGGCAGAGGGGGGCGGGCCtc Urm1; URM1 rno-miR-340 153 175 ccGAUAUUUCAUUGACUCUGCCu || ||:: :| |:|:||| aaCTTTAGGCAGAGGGGGGCGGg Urm1; URM1 rno-miR-343 156 171 AGACCCGUGUGCCUCCCUCu |:| |||| |||||:| TTTAGGCA----GAGGGGGg Urm1; URM1 rno-miR-345 161 183 CGUGACCUGAUCCCC--AGUCGU ||| ||: : ||| |||||| GCAGAGGGGGGCGGGCCTCAGCA Urm1; URM1 rno-miR-346 142 167 uCUCCGUCCG--UG-AGUCCGUCUgu || |:|| | || |:||||||| gGAAGTAGCCTAACTTTAGGCAGAgg Urm1; URM1 rno-miR-347 155 173 acccgCUGGGUCUCCCUGu |:| ||:|||:| ctttaGGCAGAGGGGGGCg Urm1; URM1 rno-miR-34a 70 100 uuGUUGGUC--------GAUUCUGUGACGGu | ||||| ||:||||||| :| ggCCACCAGATGGGCTCCTGAGACACTCTCc Urm1; URM1 rno-miR-351 158 184 gUCCGAGU-UUCCCG--AGGAGUCccu |||| | ::|||| |||||| tAGGCAGAGGGGGGCGGGCCTCAGcat Urm1; URM1 rno-miR-352 97 117 auGAUACGUUGGAUGAUGAGa | | || :||||| |||| ctCCAGGCTGCCTACAACTCa Urm1; URM1 rno-miR-370 22 45 uuGGUC-CAAGGUGGGGUCGUCCG |||| |: ||||::|| ||| ccCCAGCCCTTGACCCTGGCTGGC Urm1; URM1 rno-miR-422b 175 197 CGGAAGAC-UG-AGGUUCAGGUCa ||| || | |: | :|| ||||| GCC-TCAGCATGTGTAACTCCAGg Urm1; URM1 rno-miR-540 24 47 GGUC-CUAGCUGG---AGACUGGA |||| |:|||| |||:||| CCAGCCCTTGACCCTGGCTGGCCT Urm1; URM1 rno-miR-664 119 142 aucCGACCCC--UCAUUUACUUau |:||||| || |||||:| tctGTTGGGGGTAGAAAATGGAag Urm1; URM1 rno-miR-92 172 192 GUCCGGCCCUGUUCACGUUau |:|||| :|| |||:|| CGGGCCTCAGCATGTGTAAct

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Urm1 RAID01126023 rno-miR-29b-3p miRNA MIMAT0000801 Urm1 mRNA 311840 Prediction 0.1828 Urm1 RAID02976957 rno-miR-29c-3p miRNA MIMAT0000803 Urm1 mRNA 311840 Prediction 0.1828 Urm1 RAID03782764 rno-miR-29a-3p miRNA MIMAT0000802 Urm1 mRNA 311840 Prediction 0.1828