DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G042995 Cish Rattus norvegicus 83681

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Cish; rCG_25823 rno-let-7a 3 29 -UUGAUAUGUUGGAUG--AUGGAGU- ::| :|| |||:| |:||||| GGGCCAGGCACCCUGCCCUGCCUCAC Cish; rCG_25823 rno-let-7b 3 29 -UUGGUGUGUUGGAUG--AUGGAGU- ::||| :|| |||:| |:||||| GGGCCAGGCACCCUGCCCUGCCUCAC Cish; rCG_25823 rno-let-7c 3 29 -UUGGUAUGUUGGAUG--AUGGAGU- ::||| :|| |||:| |:||||| GGGCCAGGCACCCUGCCCUGCCUCAC Cish; rCG_25823 rno-let-7d 4 28 -UGAUACGUUGGAUG--AUGGAGA :| ||| |||:| |:|||| GGCCAGGCACCCUGCCCUGCCUCA Cish; rCG_25823 rno-let-7e 4 29 -UGAUAUGUUGGA--GGAUGGAGU- :| :|| ||| |||:||||| GGCCAGGCACCCUGCCCUGCCUCAC Cish; rCG_25823 rno-let-7f 3 29 -UUGAUAUGUUAGAUG--AUGGAGU- ::| :|| ||:| |:||||| GGGCCAGGCACCCUGCCCUGCCUCAC Cish; rCG_25823 rno-let-7i 8 29 UGUCGUGUUUGAUG--AUGGAGU- :|||| ||:| |:||||| -AGGCACC--CUGCCCUGCCUCAC Cish; rCG_25823 rno-miR-124a 3 27 ACCGUAA-GUGG--CGC-ACGGAAUU ||| |||| || ||||| GGGCCAGGCACCCUGCCCUGCCUC-- Cish; rCG_25823 rno-miR-134 1 15 GGGAGACCAGUUGGUCAGUGU |||| :|||| ||| ----CUGG---GCCAGGCACC Cish; rCG_25823 rno-miR-298 2 26 -CCUUC-UUGUCGGGA-GGAGACGG- ||: ::|| |||| || ||||| UGGGCCAGGCA-CCCUGCC-CUGCCU Cish; rCG_25823 rno-miR-31 1 21 GUCGAUACGGUC-GUAGAACGGA || ||||| || | |||| ---CUGGGCCAGGCACCCUGCCC Cish; rCG_25823 rno-miR-327 11 29 -UGGGAGUACGGGG---AGUUCC |||| |||||: ||| CACCC---UGCCCUGCCUCAC-- Cish; rCG_25823 rno-miR-328 2 11 UGCCUUCCCGUCUCUCCCGGUC- ||||||| --------------UGGGCCAGG Cish; rCG_25823 rno-miR-34a 3 26 UUGUUGGU-CGAUUC-UGUGACGGU ::||| || :| ||||| --GGGCCAGGCACCCUGCCCUGCCU Cish; rCG_25823 rno-miR-34c 4 27 -CGUUAGUCGAUUGAUGUGACGGA- || :|| ||:| |||||| GGCCA--GGCACCCUGCCCUGCCUC Cish; rCG_25823 rno-miR-449 4 26 -UGGUCGAUUGUU--AUGUGACGGU :|||| :|| |:| ||||| GGCCAG---GCACCCUGCCCUGCCU Cish; rCG_25823 rno-miR-485 1 28 CUUAAGUAGUGCCGGU-------------CGGAGA | ||||| ||||| --------CUGGGCCAGGCACCCUGCCCUGCCUCA Cish; rCG_25823 rno-miR-98 3 29 -UUGUUAUGUU-GAAU-GAUGGAGU- ::| :|| || ||:||||| GGGCCAGGCACCCUGCCCUGCCUCAC Cish; rCG_25823 rno-let-7a 4 27 uuGAUAUGUUGGAU--GAUGGAGU | | :|| |||: ||:||||| ggCCAGGCACCCTGCCCTGCCTCA Cish; rCG_25823 rno-let-7b 4 27 uuGGUGUGUUGGAU--GAUGGAGU ||| :|| |||: ||:||||| ggCCAGGCACCCTGCCCTGCCTCA Cish; rCG_25823 rno-let-7c 4 27 uuGGUAUGUUGGAU--GAUGGAGU ||| :|| |||: ||:||||| ggCCAGGCACCCTGCCCTGCCTCA Cish; rCG_25823 rno-let-7d 5 27 uGAUACGUUGGAU--GAUGGAGa | | ||| |||: ||:|||| gCCAGGCACCCTGCCCTGCCTCa Cish; rCG_25823 rno-let-7e 5 27 uGAUAUGUUGGA--GGAUGGAGU | | :|| ||| |||:||||| gCCAGGCACCCTGCCCTGCCTCA Cish; rCG_25823 rno-let-7f 4 27 uuGAUAUGUUAGAU--GAUGGAGU | | :|| ||: ||:||||| ggCCAGGCACCCTGCCCTGCCTCA Cish; rCG_25823 rno-let-7i 6 27 uGUCGUGUUUGAU--GAUGGAGU ||| :|| ||: ||:||||| cCAG-GCACCCTGCCCTGCCTCA Cish; rCG_25823 rno-miR-124a 2 28 ACC--GUAAGUGG--C-GCACGGAAUu ||| || |||| | | ||||| | TGGGCCAGGCACCCTGCCCTGCCTCAc Cish; rCG_25823 rno-miR-298 1 24 ccuuCUUGUC---GGGA-GGAGACGG |: ||| |||| || ||||| -ctgGGCCAGGCACCCTGCC-CTGCC Cish; rCG_25823 rno-miR-327 12 30 UGGGAGUACGG---GGAGUucc |||| |||| ||||| ACCC---TGCCCTGCCTCAcac Cish; rCG_25823 rno-miR-328 1 9 ugccuucccgucucuCCCGGUC ||||||| -------------ctGGGCCAG Cish; rCG_25823 rno-miR-34a 1 20 uuguugguCGAUUC-UGUGACGGu || |:| || ||||| ----ctggGCCAGGCACCCTGCCc Cish; rCG_25823 rno-miR-34c 6 25 cGUUAGUCGAUUGAUGUGACGGA ||: || | ||:| |||||| cCAGGCACC---CTGCCCTGCCT Cish; rCG_25823 rno-miR-449 5 25 uGGU-CGAUUGUUAUGUGACGGu ||| || || |:| ||||| gCCAGGC--ACCCTGCCCTGCCt Cish; rCG_25823 rno-miR-485 6 27 cuuaaGUAGUGCCGGUCGGAGa || | :| || ||||| ccaggCACCCTGCCCTGCCTCa Cish; rCG_25823 rno-miR-98 4 27 uuGUUAUGUUGAAU--GAUGGAGU | | :|| | |: ||:||||| ggCCAGGCACCCTGCCCTGCCTCA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cish RAID00035064 rno-miR-150-5p miRNA MIMAT0000853 Cish mRNA 83681 Prediction 0.1828 Cish RAID00091830 rno-miR-142-5p miRNA MIMAT0000847 Cish mRNA 83681 Prediction 0.1828 Cish RAID00494980 rno-miR-343 miRNA MIMAT0000591 Cish mRNA 83681 Prediction 0.1828 Cish RAID00770515 rno-miR-18a-3p miRNA MIMAT0017095 Cish mRNA 83681 Prediction 0.1828 Cish RAID01410225 rno-miR-340-5p miRNA MIMAT0004650 Cish mRNA 83681 Prediction 0.1828 Cish RAID01987856 rno-miR-214-5p miRNA MIMAT0017159 Cish mRNA 83681 Prediction 0.1828 Cish RAID03291963 rno-miR-6328 miRNA MIMAT0025067 Cish mRNA 83681 Prediction 0.1828 Cish RAID03525401 rno-miR-149-5p miRNA MIMAT0035726 Cish mRNA 83681 Prediction 0.1828 Cish RAID03814096 rno-miR-3594-5p miRNA MIMAT0017898 Cish mRNA 83681 Prediction 0.1828