DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004645 rno-miR-148b-5p 302576 LOC302576 ggacucacauauuguCUUGAAg |||||| gaaaaacaucucaauGAACUUa 2 8 297 318 [rn4:X:28190064-28190085:+] 0.6370 120 6 -5.61 -0.2528 MIMAT0004718 rno-miR-29a* 302576 LOC302576 gacuuGUGGUUUUCUUUAGUca :|:|||| |||||| auauuUAUCAAAUCAAAUCAaa 3 18 200 221 [rn4:X:28189967-28189988:+] 0.6434 141 0 -9.84 -0.1483 MIMAT0003382 rno-miR-664 302576 LOC302576 auccgaccccucAUUUACUUau | |||||| aggaaaaacaucUCAAUGAAcu 3 11 295 316 [rn4:X:28190062-28190083:+] 0.6370 122 0 -5.05 -0.1005 MIMAT0005279 rno-miR-466c 302576 LOC302576 guACAUGUACGUGUGUAGUgu ||| : |||| |||||| agUGU-UUUGCAAACAUCAaa 3 20 25 44 [rn4:X:28189792-28189811:+] 0.6498 141 0 -15.78 -0.1116 MIMAT0005285 rno-miR-877 302576 LOC302576 gggacgCGGUAGAGGAGAUg |||| ||||||: aaugaaGCCA-GUCCUCUGa 2 15 220 238 [rn4:X:28189987-28190005:+] 0.6370 132 0 -17.98 -0.1148 MIMAT0005286 rno-miR-878 302576 LOC302576 agAUGGGUCAUAC--CACAGUACg || :| | | | |||||||| uuUAAUCUGAAGGCUGUGUCAUGa 2 21 52 75 [rn4:X:28189819-28189842:+] 0.6498 151 7 -18.19 -0.9024 MIMAT0012828 rno-miR-362 302576 LOC302576 uaagugugGAUCCAAG-GUUCCUaa ||| ||: |||||| auaagagaCUAUAUUUGCAAGGAaa 3 17 276 300 [rn4:X:28190043-28190067:+] 0.6370 131 0 -10.75 -0.2542 MIMAT0001619 rno-miR-322 302576 LOC302576 agguuuUGUACUUAAC-GACGAc || ||| || ||||| aguaucACCAGAAGUGACUGCUu 2 17 122 144 [rn4:X:28189889-28189911:+] 0.6498 120 0 -15.09 -0.8318 MIMAT0000615 rno-miR-101b 302576 LOC302576 aaGUCGAUAGU--GUCAUGA-CAu || :|||:| | ||||| || gcCAAUUAUUAGUCUGUACUAGUg 2 20 5 28 [rn4:X:28189772-28189795:+] 0.6498 122 0 -12.25 -0.7922 MIMAT0000781 rno-miR-9 302576 LOC302576 aguaugucgaucuauuGGUUUCu |||||| uuauuuccauguguuuCCAAAGa 2 8 157 179 [rn4:X:28189924-28189946:+] 0.6498 120 6 -12.86 -0.4384 MIMAT0000784 rno-miR-15b 302576 LOC302576 acauuUGGUACUACAC-GACGAu |||| || ||| ||||| guaucACCA-GAAGUGACUGCUu 2 18 123 144 [rn4:X:28189890-28189911:+] 0.6498 127 0 -18.43 -0.8247 MIMAT0000787 rno-miR-18a 302576 LOC302576 gauaGACGUGAUCUA--CGUGGAAu |||| :| || ||||||| gugaCUGCUUUCUAUCAGCACCUUa 2 20 135 159 [rn4:X:28189902-28189926:+] 0.6498 154 7 -21.00 -1.2553 MIMAT0000788 rno-miR-19b 302576 LOC302576 agucaaaacguaccUAAACGUgu ||||||| aaauaagagacuauAUUUGCAag 3 10 274 296 [rn4:X:28190041-28190063:+] 0.6370 125 0 -6.01 -0.1677 MIMAT0000789 rno-miR-19a 302576 LOC302576 agucaaaacguAUCUAAACGUgu || ||||||| aaauaagagacUAUAUUUGCAag 3 13 274 296 [rn4:X:28190041-28190063:+] 0.6370 132 0 -6.54 -0.1677 MIMAT0000810 rno-miR-31 302576 LOC302576 gucgauacggucguAGAACGGa ||||||| --------------UCUUGCCa 2 9 1 8 [rn4:X:28189768-28189775:+] 0.6498 140 7 -10.34 -0.8928 MIMAT0000810 rno-miR-31 302576 LOC302576 gucgaUACGGUCGUAGAACGga || | | |||||| gacaaAUUGAAACUUCUUGCaa 3 18 96 117 [rn4:X:28189863-28189884:+] 0.6498 125 0 -8.73 -0.1352 MIMAT0000823 rno-miR-101a 302576 LOC302576 aaGUCAAUAGU--GUCAUGA-CAu || ||||:| | ||||| || gcCAAUUAUUAGUCUGUACUAGUg 2 20 5 28 [rn4:X:28189772-28189795:+] 0.6498 126 0 -10.98 -0.7849 MIMAT0000827 rno-miR-122 302576 LOC302576 guuugugguaacaguGUGAGGu |||||| agacaaaauaaaacuCACUCCa 2 8 345 366 [rn4:X:28190112-28190133:+] 0.6370 120 6 -15.69 -0.2162 MIMAT0000842 rno-miR-136 302576 LOC302576 agguagUAGUUU--UGUUUACCUca :||||| |||||||| ccaagaGUCAAACUUCAAAUGGAaa 3 18 252 276 [rn4:X:28190019-28190043:+] 0.6370 140 0 -17.26 -0.2693 MIMAT0000849 rno-miR-143 302576 LOC302576 acucgaugucacgaaGUAGAGu |||||| auuugcaaggaaaaaCAUCUCa 2 8 288 309 [rn4:X:28190055-28190076:+] 0.6370 120 6 -14.34 -0.3247 MIMAT0000868 rno-miR-193 302576 LOC302576 ugacccugaaacaucCGGUCAa |||||| aucaaaucaaaugaaGCCAGUc 2 8 211 232 [rn4:X:28189978-28189999:+] 0.6434 120 6 -9.22 -0.1271 MIMAT0003176 rno-miR-539 302576 LOC302576 uguguGGUUCCUAU-UAAAGAGg |||| | | |||| || cacuuCCAACAAAAUAUUUAUCa 2 18 187 209 [rn4:X:28189954-28189976:+] 0.6498 120 0 -7.92 -0.1106 MIMAT0003193 rno-miR-494 302576 LOC302576 uccaAAGGGCACAUACAAAGu ||:|| |:|||||| cuuaUUUCC--AUGUGUUUCc 2 18 156 174 [rn4:X:28189923-28189941:+] 0.6498 134 6 -12.46 -0.2377 MIMAT0005300 rno-miR-182 302576 LOC302576 gccacacucaagaugguAACGGUUu ||||||| ---------------ucUUGCCAAu 2 9 1 10 [rn4:X:28189768-28189777:+] 0.6498 140 7 -10.26 -0.6152 MIMAT0005314 rno-miR-425 302576 LOC302576 agUUGCCCUCACUAGCACAGUAa ||: || |: :||||||| uuAAUCUGA-AGGCUGUGUCAUg 2 22 53 74 [rn4:X:28189820-28189841:+] 0.6498 147 7 -14.45 -0.8388

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score LOC302576 RAID00150786 rno-miR-193a-3p miRNA MIMAT0000868 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID00200187 rno-miR-101a-3p miRNA MIMAT0000823 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID00203558 rno-miR-19b-3p miRNA MIMAT0000788 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID00214715 rno-miR-19a-3p miRNA MIMAT0000789 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID00323540 rno-miR-494-3p miRNA MIMAT0003193 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID00342467 rno-miR-322-5p miRNA MIMAT0001619 LOC302576 mRNA 302576 Prediction 0.1828 Gmcl1l RAID00565859 rno-miR-18a-5p miRNA MIMAT0000787 Gmcl1l mRNA 302575 Prediction 0.1828 LOC302576 RAID00774181 rno-miR-425-5p miRNA MIMAT0005314 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID00782227 rno-miR-122-5p miRNA MIMAT0000827 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID01245623 rno-miR-101b-3p miRNA MIMAT0000615 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID01387113 rno-miR-15b-5p miRNA MIMAT0000784 LOC302576 mRNA 302576 Prediction 0.1828 Gmcl1l RAID01427111 rno-miR-667-5p miRNA MIMAT0017369 Gmcl1l mRNA 302575 Prediction 0.1828 Gmcl1l RAID01880172 rno-miR-136-5p miRNA MIMAT0000842 Gmcl1l mRNA 302575 Prediction 0.1828 LOC302576 RAID02093527 rno-miR-136-5p miRNA MIMAT0000842 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID02154728 rno-miR-18a-5p miRNA MIMAT0000787 LOC302576 mRNA 302576 Prediction 0.2202 LOC302576 RAID02903381 rno-miR-143-3p miRNA MIMAT0000849 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID02963072 rno-miR-667-5p miRNA MIMAT0017369 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID03010524 rno-miR-31a-5p miRNA MIMAT0000810 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID03092372 rno-miR-182 miRNA MIMAT0005300 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID03225659 rno-miR-9a-5p miRNA MIMAT0000781 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID03390195 rno-miR-539-5p miRNA MIMAT0003176 LOC302576 mRNA 302576 Prediction 0.1828 LOC302576 RAID03873071 rno-miR-451-3p miRNA MIMAT0017193 LOC302576 mRNA 302576 Prediction 0.1828