DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 288734 Chfr ggucgucguggACCCCGUCACc |||||||||| uuccuguguggUGGGGCAGUGa 2 12 288 309 [rn4:12:46652062-46652083:-] 0.5041 155 7 -24.30 -0.1377 MIMAT0000577 rno-miR-337 288734 Chfr uuuccguAGUAUAUCCUCGACuu | ||| | |||||| uuaauucUAAUAAAUGAGCUGug 3 17 1077 1099 [rn4:12:46651272-46651294:-] 0.5513 136 0 -9.19 -0.3529 MIMAT0004654 rno-miR-344-5p 288734 Chfr ggaccUUAGAUCGGUCCUCGGACu || :||| | |||||| gacuaAAAUUAG-GAAUAGCCUGa 2 20 608 630 [rn4:12:46651741-46651763:-] 0.5513 121 6 -19.84 -0.1084 MIMAT0000607 rno-miR-7a* 288734 Chfr uacCGUCUGACACUAAACAAca ||| | ||| |||||| ugaGCAUA-UGU-UUUUGUUua 3 20 643 662 [rn4:12:46651709-46651728:-] 0.5513 131 0 -8.12 -0.1288 MIMAT0000607 rno-miR-7a* 288734 Chfr uaccgUCUGACACU---AAACAAca | ||| ||| |||||| gaauaAUACU-UGAAAUUUUGUUcu 3 18 890 913 [rn4:12:46651458-46651481:-] 0.5513 126 0 -4.47 -0.1199 MIMAT0004705 rno-let-7b* 288734 Chfr cccuuccGUCAUCCAACAUAUc ||| ||||||| aaagacaCAGCCUUUUGUAUAu 2 16 491 512 [rn4:12:46651859-46651880:-] 0.5513 143 7 -7.97 -0.9308 MIMAT0004724 rno-miR-99a* 288734 Chfr gucuGGGUAUCUUUGCUCGAAc :|:: | ::||||||| acucUCUGGUGUGGCGAGCUUu 2 19 124 145 [rn4:12:46652226-46652247:-] 0.4913 146 7 -16.80 -0.1579 MIMAT0004725 rno-miR-99b* 288734 Chfr gcCUGGGUGUCUG---UGCUCGAAc |||:| | |:: :||||||| caGACUCUCUGGUGUGGCGAGCUUu 2 21 121 145 [rn4:12:46652226-46652250:-] 0.4913 151 7 -19.38 -0.1594 MIMAT0000831 rno-miR-126* 288734 Chfr gcgcaugguuuucAUUAUUac |||||| ggugcuuaucuucUAAUAAga 3 9 535 555 [rn4:12:46651816-46651836:-] 0.5513 120 0 -8.21 -0.1268 MIMAT0000847 rno-miR-142-5p 288734 Chfr ucAUCACGAAAGA--UGAAAUAc |||| :|||:| ||||| | cuUAGUUUUUUUUAAACUUUUUa 2 20 912 934 [rn4:12:46651437-46651459:-] 0.5513 134 0 -8.57 -0.1096 MIMAT0004741 rno-miR-219-1-3p 288734 Chfr gcccugCAGG---UCUGCGUUGAGa |||| ||| ||||||| ccuccaGUCCCUGAGA-GCAACUCc 2 17 778 801 [rn4:12:46651570-46651593:-] 0.5513 149 7 -18.28 -0.1599 MIMAT0003113 rno-miR-489 288734 Chfr cgACGGUAUAUACACUACAGUAa | ::| :| || ||||||| auUAUUAGGUUUGCCAUGUCAUc 2 22 865 887 [rn4:12:46651484-46651506:-] 0.5513 153 7 -11.87 -0.1851 MIMAT0003378 rno-miR-378* 288734 Chfr uguguccuggaccucAGUCCUc |||||| guaacuuuuugcuucUCAGGAa 2 8 975 996 [rn4:12:46651375-46651396:-] 0.5513 120 6 -11.33 -0.1175 MIMAT0005280 rno-miR-743b 288734 Chfr agAUAAGUCAUACCACAGAAAg | | :| | |||||||| ggUUUGUACUUCUGUGUCUUUu 2 21 333 354 [rn4:12:46652017-46652038:-] 0.5041 148 7 -11.33 -0.3175 MIMAT0005319 rno-miR-484 288734 Chfr uagcccuccccugacUCGGACu |||||| acuaaaauuaggaauAGCCUGa 2 8 609 630 [rn4:12:46651741-46651762:-] 0.5513 120 6 -16.03 -0.1105 MIMAT0005323 rno-miR-532-3p 288734 Chfr acguUCGGA-ACCCACACCCUCc | :|| || |||||||| caguACUCUGUGUUUGUGGGAGa 2 19 1041 1063 [rn4:12:46651308-46651330:-] 0.5513 153 7 -18.30 -0.8763 MIMAT0005323 rno-miR-532-3p 288734 Chfr acgUUCGGAACCCACACC-CUCc :| :|| ||||||| ||| ucaGACUCUCUGGUGUGGCGAGc 2 20 120 142 [rn4:12:46652229-46652251:-] 0.4913 127 0 -22.51 -0.3098 MIMAT0005324 rno-miR-598-5p 288734 Chfr gagcguGGUAGCCGUAGUGGcg ::||:| |||||| uaucuuUUAUUGAAAUCACCug 3 17 933 954 [rn4:12:46651417-46651438:-] 0.5513 132 0 -15.78 -0.1964 MIMAT0005330 rno-miR-674-3p 288734 Chfr aacAAGACUCUACCCUCGACAc |||| | | ||||||| uaaUUCUAAUAAAUGAGCUGUg 2 20 1078 1099 [rn4:12:46651272-46651293:-] 0.5513 155 7 -16.37 -1.2585 MIMAT0005338 rno-miR-770 288734 Chfr gcaccgggUCUGUGCACCACGa || : ||||||| uuuuaauaAGUUUGGUGGUGCu 2 15 519 540 [rn4:12:46651831-46651852:-] 0.5513 142 7 -14.64 -0.9844 MIMAT0012826 rno-miR-220 288734 Chfr uccagagacugugaCACCACc |||||| uuuuaauaaguuugGUGGUGc 2 8 519 539 [rn4:12:46651832-46651852:-] 0.5513 120 6 -10.77 -0.2032 MIMAT0012833 rno-miR-582 288734 Chfr ucauugaccaacuuGUUGACAu ||||||| aggaauacaauuuuCAACUGUu 2 9 992 1013 [rn4:12:46651358-46651379:-] 0.5513 140 7 -9.24 -0.8873 MIMAT0012833 rno-miR-582 288734 Chfr ucAUUGACCAACUUGUUGACAu ||| | || || |||||| uuUAAAU-AUU-AAAAACUGUa 2 21 556 575 [rn4:12:46651796-46651815:-] 0.5513 124 6 -7.60 -0.1962 MIMAT0012843 rno-miR-876 288734 Chfr accACUA-AGUGUCUCUUUAGgu | || |: :| |||||| uuuUUAUCUUUUAUUGAAAUCac 3 20 929 951 [rn4:12:46651420-46651442:-] 0.5513 126 0 -7.05 -0.1010 MIMAT0012847 rno-miR-293 288734 Chfr guuUCACAGU-GUGU-CAAAC-UCa |||| || ::|| ||||| || ggcAGUGACAGUGCAGGUUUGCAGg 2 20 302 326 [rn4:12:46652045-46652069:-] 0.5041 125 0 -11.68 -0.1622 MIMAT0012853 rno-miR-761 288734 Chfr acACAGUCAAAGUGGGACGACg || || | |||||||| ccUGAGAGCAACUCCCUGCUGa 2 21 787 808 [rn4:12:46651563-46651584:-] 0.5513 152 7 -19.09 -0.2430 MIMAT0012854 rno-miR-764 288734 Chfr uccuCCUGUACACUCGUGg ||| : ||||||: auuuGGAAGAAUGAGCAUa 2 16 632 650 [rn4:12:46651721-46651739:-] 0.5513 131 0 -12.64 -0.1236 MIMAT0012860 rno-miR-496 288734 Chfr cucuaaccgguacAUUAUGAGu |||||||: augucaucuggaaUAAUACUUg 2 10 880 901 [rn4:12:46651470-46651491:-] 0.5513 129 0 -7.72 -0.1079 MIMAT0000575 rno-miR-335 288734 Chfr ugUAAAA---AGCAAU--AACGAGAACu ||||| :|||: ||||||||| caAUUUUCAACUGUUGUCUUGCUCUUGa 2 22 999 1026 [rn4:12:46651345-46651372:-] 0.5513 159 7 -19.14 -1.1165 MIMAT0000583 rno-miR-339-5p 288734 Chfr gcacUCGAGGACCUCCUGUCCCu :||||| | ||||||| agauGGCUCCAGACUGACAGGGc 2 20 815 837 [rn4:12:46651534-46651556:-] 0.5513 159 7 -23.70 -0.1409 MIMAT0004650 rno-miR-340-5p 288734 Chfr uuagucagaguaacgAAAUAUu |||||| gcacaaauacuauaaUUUAUAa 2 8 576 597 [rn4:12:46651774-46651795:-] 0.5513 120 6 -4.57 -0.2873 MIMAT0000589 rno-miR-342-3p 288734 Chfr ugcccacgcuaaAGACACACUCu || ||||||| cuggccuucuagUCAGUGUGAGa 2 12 221 243 [rn4:12:46652128-46652150:-] 0.4913 147 7 -16.80 -0.2395 MIMAT0000796 rno-miR-26a 288734 Chfr ucGGAUAG--GACC-UA--AUGAACUu | |:|| |||| || ||||||| gcCAUGUCAUCUGGAAUAAUACUUGAa 2 21 877 903 [rn4:12:46651468-46651494:-] 0.5513 153 7 -21.86 -1.2664 MIMAT0000797 rno-miR-26b 288734 Chfr uggaUAGGACUUA--AUGAACUu |||: |||| ||||||| ugucAUCUGGAAUAAUACUUGAa 2 18 881 903 [rn4:12:46651468-46651490:-] 0.5513 160 7 -16.04 -1.2664 MIMAT0000801 rno-miR-29b 288734 Chfr uuGUGACUAAAGUUUACCACGAu :| | | ||: ::||||||| uuUAAUAAGUUU-GGUGGUGCUu 2 22 520 541 [rn4:12:46651830-46651851:-] 0.5513 151 7 -13.23 -0.8252 MIMAT0000802 rno-miR-29a 288734 Chfr auuggcUAAAGUCUACCACGAu | ||: |:||||||| uuaauaAGUUU-GGUGGUGCUu 2 17 521 541 [rn4:12:46651830-46651850:-] 0.5513 150 7 -16.21 -0.8252 MIMAT0000803 rno-miR-29c 288734 Chfr auuggcUAAAGUUUACCACGAu | ||: ::||||||| uuaauaAGUUU-GGUGGUGCUu 2 17 521 541 [rn4:12:46651830-46651850:-] 0.5513 146 7 -14.00 -0.8252 MIMAT0004729 rno-miR-125a-3p 288734 Chfr ccGAGGGUUCUUGGAGUGGACa ||:::| :| ||||||| auCUUUUAUUGAAAUCACCUGu 2 21 934 955 [rn4:12:46651416-46651437:-] 0.5513 152 7 -20.34 -1.2407 MIMAT0000840 rno-miR-134 288734 Chfr gggGAGACCAGUUGGUCAGUGu ||:| || :||||||| gagCUUU-AUC-UUCAGUCACa 2 20 139 158 [rn4:12:46652213-46652232:-] 0.4913 143 7 -18.49 -0.7511 MIMAT0000845 rno-miR-139-5p 288734 Chfr gaccucugugcacgUGACAUCu ||||||| uuuaaauauuaaaaACUGUAGc 2 9 556 577 [rn4:12:46651794-46651815:-] 0.5513 140 7 -10.04 -1.1760 MIMAT0000869 rno-miR-194 288734 Chfr agguGUACCUCAA--CGACAAUGu :|| || | ||||||: cuuuUAUUGAAAUCACCUGUUAUa 2 19 936 959 [rn4:12:46651412-46651435:-] 0.5513 125 0 -10.46 -0.1233 MIMAT0000885 rno-miR-214 288734 Chfr gacggacagacACGGACGACa | ||||||| cugagagcaacUCCCUGCUGa 2 11 788 808 [rn4:12:46651563-46651583:-] 0.5513 142 7 -15.04 -0.2452 MIMAT0000888 rno-miR-218 288734 Chfr uguaccaaucuaguUCGUGUu |||||| auauuaaaaacuguAGCACAa 2 8 561 581 [rn4:12:46651790-46651810:-] 0.5513 120 6 -8.78 -0.2367 MIMAT0000890 rno-miR-221 288734 Chfr cuuuggGUCGUCUGUUACAUCGa :| :| | | |||||| uuuaaaUAUUAAAAACUGUAGCa 2 18 556 578 [rn4:12:46651793-46651815:-] 0.5513 121 6 -6.81 -0.3335 MIMAT0000891 rno-miR-222 288734 Chfr ugggucaucggucuACAUCGa |||||| uaaauauuaaaaacUGUAGCa 2 8 558 578 [rn4:12:46651793-46651813:-] 0.5513 120 6 -6.88 -0.3307 MIMAT0003199 rno-miR-381 288734 Chfr cucucGAACGGGAAC-AUAu |||||:|||| ||| guuguCUUGCUCUUGAUAUa 2 15 1011 1030 [rn4:12:46651341-46651360:-] 0.5513 130 0 -17.95 -0.2165 MIMAT0003203 rno-miR-485 288734 Chfr cuuaaGUAGUGCCG--GUCGGAGa ||| ||| : ||||||| ggaagCAU-ACGUUUACAGCCUCc 2 18 439 461 [rn4:12:46651910-46651932:-] 0.5513 146 7 -20.00 -0.5061 MIMAT0005311 rno-miR-410 288734 Chfr uguccgguagacACAAUAUAa |||||||| auugaaaucaccUGUUAUAUu 2 10 941 961 [rn4:12:46651410-46651430:-] 0.5513 145 7 -9.22 -0.9334 MIMAT0005320 rno-miR-495 288734 Chfr uucUUCACGUGGUACAAACAAa || || :|::|||||||| aauAAAUGAGCUGUGUUUGUUu 2 20 1085 1106 [rn4:12:46651265-46651286:-] 0.5513 167 7 -13.91 -1.0160 MIMAT0005320 rno-miR-495 288734 Chfr uucuucacgugguacAAACAAa |||||| aauaauacuugaaauUUUGUUc 2 8 891 912 [rn4:12:46651459-46651480:-] 0.5513 120 6 -4.45 -0.1445

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Chfr RAID00035105 rno-let-7b-3p miRNA MIMAT0004705 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00097518 rno-miR-98-3p miRNA MIMAT0017111 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00113358 rno-let-7c-2-3p miRNA MIMAT0017088 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00115772 rno-miR-485-5p miRNA MIMAT0003203 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID00206323 rno-miR-674-3p miRNA MIMAT0005330 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00312651 rno-miR-3596d miRNA MIMAT0017823 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00363409 rno-miR-3562 miRNA MIMAT0017832 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00436711 rno-miR-532-3p miRNA MIMAT0005323 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00476157 rno-miR-3586-5p miRNA MIMAT0017880 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00694107 rno-miR-1912-5p miRNA MIMAT0017864 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID00944491 rno-miR-342-3p miRNA MIMAT0000589 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01052240 rno-miR-221-3p miRNA MIMAT0000890 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01090627 rno-miR-194-5p miRNA MIMAT0000869 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01306959 rno-miR-29b-3p miRNA MIMAT0000801 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID01343220 rno-miR-761 miRNA MIMAT0012853 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01363670 rno-let-7f-1-3p miRNA MIMAT0017089 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01404061 rno-miR-222-3p miRNA MIMAT0000891 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01575313 rno-miR-188-3p miRNA MIMAT0017297 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01720614 rno-miR-410-3p miRNA MIMAT0005311 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01756772 rno-miR-181a-2-3p miRNA MIMAT0017138 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01803347 rno-let-7a-1-3p miRNA MIMAT0017085 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID01804367 rno-miR-339-5p miRNA MIMAT0000583 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID01832450 rno-miR-125a-3p miRNA MIMAT0004729 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID02200517 rno-miR-495 miRNA MIMAT0005320 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID02201194 rno-miR-134-5p miRNA MIMAT0000840 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID02272224 rno-miR-26a-5p miRNA MIMAT0000796 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID02345696 rno-miR-3556a miRNA MIMAT0017821 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID02346039 rno-miR-582-5p miRNA MIMAT0012833 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID02482487 rno-miR-218a-5p miRNA MIMAT0000888 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID02590672 rno-miR-26b-5p miRNA MIMAT0000797 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID02789101 rno-miR-214-3p miRNA MIMAT0000885 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID03078238 rno-miR-381-3p miRNA MIMAT0003199 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID03178573 rno-miR-29c-3p miRNA MIMAT0000803 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID03497789 rno-miR-340-5p miRNA MIMAT0004650 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID03559534 rno-miR-335 miRNA MIMAT0000575 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID03782247 rno-miR-361-3p miRNA MIMAT0017199 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID03814069 rno-miR-5132-5p miRNA MIMAT0035750 Chfr mRNA 288734 Prediction 0.1828 Chfr RAID03887083 rno-miR-139-5p miRNA MIMAT0000845 Chfr mRNA 288734 Prediction 0.2202 Chfr RAID04019484 rno-miR-29a-3p miRNA MIMAT0000802 Chfr mRNA 288734 Prediction 0.2202