DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004637 rno-miR-323* 499417 Sumo3 cgcuUGCGCGGUGCCUGG-UGGa || || ||| |||| ||| agucACCCGACACUGACCUACCa 2 19 988 1010 [rn4:20:11394107-11394129:-] 0.5270 130 0 -17.06 -0.4942 MIMAT0000576 rno-miR-336 499417 Sumo3 ucugAUCUAUACCUUCCCACu || || | ||||||| uggaUACAUCGGUAAGGGUGg 2 18 577 597 [rn4:20:11394520-11394540:-] 0.5270 153 7 -19.03 -0.1269 MIMAT0000607 rno-miR-7a* 499417 Sumo3 uacCGUCUGACACU----AAACAACa ||||| | | ||||||| gaaGCAGAAUUCCACCCGUUUGUUGu 2 20 393 418 [rn4:20:11394699-11394724:-] 0.5239 142 7 -14.63 -0.1332 MIMAT0000610 rno-miR-352 499417 Sumo3 auGAU-ACGUUGGAUGAUGAga ||: ||: ::||||||| acCUGUUGUCCUUUACUACUgu 3 20 1114 1135 [rn4:20:11393982-11394003:-] 0.7822 134 0 -14.08 -0.1979 MIMAT0003153 rno-miR-24-1* 499417 Sumo3 gacuaUAGUCGAGU--CAUCCGUg | | |:|:: ||||||| auuccACCCGUUUGUUGUAGGCAu 2 18 401 424 [rn4:20:11394693-11394716:-] 0.5239 144 7 -14.51 -0.7601 MIMAT0005441 rno-miR-24-2* 499417 Sumo3 ugaCAAAGUCGAGUCAUCCGUg |||| |:| ||||||| cccGUUU--GUU--GUAGGCAu 2 20 407 424 [rn4:20:11394693-11394710:-] 0.5239 145 7 -12.81 -0.7315 MIMAT0004719 rno-miR-30c-1* 499417 Sumo3 ccucauuuguugggaGAGGGUc |||||| guuuucauuuguuucCUCCCAu 2 8 195 216 [rn4:20:11394901-11394922:-] 0.5239 120 6 -12.37 -0.1524 MIMAT0005442 rno-miR-30c-2* 499417 Sumo3 ucucAUUUGUCGGAAGAGGGUc | | : |::| |||||| guuuUCAUUUGUUUCCUCCCAu 2 19 195 216 [rn4:20:11394901-11394922:-] 0.5239 122 6 -11.67 -0.1509 MIMAT0004731 rno-miR-125b* 499417 Sumo3 uccAGGGUUCUCGGACUGAACa |:|| :|: ||||||| gguUUCCUCCGGUGUGACUUGu 2 20 299 320 [rn4:20:11394797-11394818:-] 0.5239 151 7 -20.34 -0.1251 MIMAT0004738 rno-miR-199a-3p 499417 Sumo3 auuGGUUACACG-UCUGAUGACa |:: ||| | ||||||| uacCUGUUGUCCUUUACUACUGu 2 20 1113 1135 [rn4:20:11393982-11394004:-] 0.7822 146 7 -16.68 -1.2554 MIMAT0000893 rno-miR-290 499417 Sumo3 uuUUUCACGGGGGUAUCAAACUc ||| |: :||||||||: guAAACAGUAAAUAUAGUUUGGu 2 22 1134 1156 [rn4:20:11393961-11393983:-] 0.7822 141 0 -12.19 -0.3001 MIMAT0000901 rno-miR-299 499417 Sumo3 uacauacacccUGCCAUUUGgu || |||||| uguccuuuacuACUGUAAACag 3 12 1120 1141 [rn4:20:11393976-11393997:-] 0.7822 127 0 -6.72 -0.1913 MIMAT0000901 rno-miR-299 499417 Sumo3 uacauaCACCCUGCCA-UUUGGu |||| |: || ||||| guaaggGUGGCAUAGUGAAACCc 2 17 588 610 [rn4:20:11394507-11394529:-] 0.5270 124 0 -11.91 -0.1020 MIMAT0001320 rno-miR-421 499417 Sumo3 guuguuuguaaaUUACUCCGg |||||||| ugguuugggggaAAUGAGGCg 2 10 152 172 [rn4:20:11394945-11394965:-] 0.5239 145 7 -11.81 -0.2869 MIMAT0003124 rno-miR-412 499417 Sumo3 ugCCGAUCACCUGGU---CCACUUCa | :| || | || ||||||| gaGCUUUGUCAAGCAUAUGGUGAAGu 2 22 456 481 [rn4:20:11394636-11394661:-] 0.5239 144 7 -17.14 -0.7969 MIMAT0003177 rno-miR-541 499417 Sumo3 ucACACUGGUUGUAGUCUUAGGGAa ||||:|| : :|| ||||||| ccUGUGGCCUGAGUC-UAAUCCCUa 2 24 268 291 [rn4:20:11394826-11394849:-] 0.5239 165 7 -23.36 -0.6989 MIMAT0003209 rno-miR-363* 499417 Sumo3 uuuaacguagcacuAGGUGGGc ||||||| cagagaagcagaauUCCACCCg 2 9 389 410 [rn4:20:11394707-11394728:-] 0.5239 140 7 -21.16 -0.5625 MIMAT0005283 rno-miR-872* 499417 Sumo3 uccUCCGAUGAC-GUUAUCAAGu || : | || | ||||||| gucAGUUAAAUGUCUAUAGUUCc 2 20 907 929 [rn4:20:11394188-11394210:-] 0.5270 150 7 -9.62 -0.3844 MIMAT0005283 rno-miR-872* 499417 Sumo3 uccuccgaUGACGU---UAUCAAGu || |:| ||||||: uacuguaaACAGUAAAUAUAGUUUg 2 15 1130 1154 [rn4:20:11393963-11393987:-] 0.7822 125 0 -9.23 -0.2819 MIMAT0005290 rno-miR-883 499417 Sumo3 uaugacuCUCUACAACGUCAAu | |:|| ||||||| ccggauuGUGGUG-UGCAGUUu 2 16 830 850 [rn4:20:11394267-11394287:-] 0.5270 149 7 -17.46 -0.3188 MIMAT0005315 rno-miR-434 499417 Sumo3 uccucAGCUCACUACCAA-GUUu || |||| ||||| ||| cgcuuUCAAGUG-UGGUUGCAAa 2 18 778 799 [rn4:20:11394318-11394339:-] 0.5270 127 0 -14.34 -0.2973 MIMAT0012822 rno-miR-202 499417 Sumo3 uuucuucAUAUACGUAUCCUu |:|| |||||||| cguuuguUGUAGGCAUAGGAu 2 15 409 429 [rn4:20:11394688-11394708:-] 0.5239 158 7 -14.22 -0.5928 MIMAT0012826 rno-miR-220 499417 Sumo3 uccAGAGACUGUGACACCACc |:|| : |:||||||| cauUUUCCCGGAUUGUGGUGu 2 19 823 843 [rn4:20:11394274-11394294:-] 0.5270 154 7 -16.18 -0.2450 MIMAT0012849 rno-miR-295 499417 Sumo3 cuucacACGGGGUGUAAACUCa | |: :| ||||||| gugaaaUACUGUAAAUUUGAGc 2 17 438 459 [rn4:20:11394658-11394679:-] 0.5239 148 7 -10.82 -0.7313 MIMAT0001619 rno-miR-322 499417 Sumo3 agguUUUGUACUUAACGACGAc ||: || ||||||||| cuguAAGGAUCCAUUGCUGCUu 2 19 944 965 [rn4:20:11394152-11394173:-] 0.5270 162 7 -14.38 -0.2355 MIMAT0000606 rno-miR-7a 499417 Sumo3 ugUUGUUUUAGUGAUCAGAAGGu || | :| | |||||||| uaAAAACUGUGAGGAGUCUUCCu 2 22 506 528 [rn4:20:11394589-11394611:-] 0.5239 153 7 -15.05 -0.3382 MIMAT0000615 rno-miR-101b 499417 Sumo3 aaGUCGAUAG--UGUCAUGACAu | |:|:|| :| |||||| acCUGUUGUCCUUUACUACUGUa 2 20 1114 1136 [rn4:20:11393981-11394003:-] 0.7822 122 6 -14.52 -0.4680 MIMAT0000615 rno-miR-101b 499417 Sumo3 aagucgauagugucAUGACAu |||||| auuaaaaugugaaaUACUGUa 2 8 430 450 [rn4:20:11394667-11394687:-] 0.5239 120 6 -8.72 -0.1232 MIMAT0000780 rno-miR-7b 499417 Sumo3 ugUUGUUUUAGUGUUCAGAAGGu || | :| | :|||||||| uaAAAACUGUGAGGAGUCUUCCu 2 22 506 528 [rn4:20:11394589-11394611:-] 0.5239 157 7 -16.69 -0.3382 MIMAT0000784 rno-miR-15b 499417 Sumo3 acauUUGGUA-CUACACGACGAu || || || ||||||| cuguAAGGAUCCAU-UGCUGCUu 2 19 944 965 [rn4:20:11394152-11394173:-] 0.5270 143 7 -17.47 -0.2195 MIMAT0000785 rno-miR-16 499417 Sumo3 gcggUUAUAAAUGCACGACGAu |: || |: ||||||| uguaAGGAUCCAU-UGCUGCUu 2 19 945 965 [rn4:20:11394152-11394172:-] 0.5270 144 7 -11.56 -0.2215 MIMAT0000792 rno-miR-23a 499417 Sumo3 ccuuuagggaccgUUACACUa ||||||| cauaggauauuaaAAUGUGAa 2 9 422 442 [rn4:20:11394675-11394695:-] 0.5239 140 7 -10.64 -1.2092 MIMAT0000793 rno-miR-23b 499417 Sumo3 ccauuagggaccgUUACACUa ||||||| cauaggauauuaaAAUGUGAa 2 9 422 442 [rn4:20:11394675-11394695:-] 0.5239 140 7 -9.28 -1.2092 MIMAT0000798 rno-miR-27b 499417 Sumo3 cgucuuGAAUCGGUGACACUu |||| ||||||| gugcuuCUUAAAAACUGUGAg 2 16 498 518 [rn4:20:11394599-11394619:-] 0.5239 151 7 -15.48 -0.2767 MIMAT0000799 rno-miR-27a 499417 Sumo3 cgccuuGAAUCGGUGACACUu |||| ||||||| gugcuuCUUAAAAACUGUGAg 2 16 498 518 [rn4:20:11394599-11394619:-] 0.5239 151 7 -16.70 -0.2767 MIMAT0000810 rno-miR-31 499417 Sumo3 guCGAUACGGUC-GUAGA-ACGGa ||| || ::| ||||| |||| cuGCU-UGAUGGCCAUCUCUGCCu 2 21 960 982 [rn4:20:11394135-11394157:-] 0.5270 125 0 -17.89 -0.7460 MIMAT0000823 rno-miR-101a 499417 Sumo3 aaGUCAAUAG--UGUCAUGACAu | |||:|| :| |||||| acCUGUUGUCCUUUACUACUGUa 2 20 1114 1136 [rn4:20:11393981-11394003:-] 0.7822 126 6 -14.79 -0.4613 MIMAT0000823 rno-miR-101a 499417 Sumo3 aagucaauagugucAUGACAu |||||| auuaaaaugugaaaUACUGUa 2 8 430 450 [rn4:20:11394667-11394687:-] 0.5239 120 6 -8.60 -0.1232 MIMAT0000845 rno-miR-139-5p 499417 Sumo3 gaccucUGUGCAC---GUGACAUcu | |:||| :|||||| auauuaAAAUGUGAAAUACUGUAaa 3 17 428 452 [rn4:20:11394665-11394689:-] 0.5239 127 0 -11.76 -0.1300 MIMAT0000845 rno-miR-139-5p 499417 Sumo3 gaccucugugcacGUGACAUcu :|||||| uguuguccuuuacUACUGUAaa 3 10 1117 1138 [rn4:20:11393979-11394000:-] 0.7822 121 0 -8.18 -0.1811 MIMAT0000846 rno-miR-141 499417 Sumo3 gguagAAAUGGUCUGUCACAAu |||:|: :||||||| ucaagUUUGCU--GCAGUGUUg 2 18 747 766 [rn4:20:11394351-11394370:-] 0.5270 150 7 -16.41 -0.2309 MIMAT0000850 rno-miR-144 499417 Sumo3 ucAUGUAGUA-GAUAUGACAu || | ::| ||||||| auUAAAAUGUGAAAUACUGUa 2 19 430 450 [rn4:20:11394667-11394687:-] 0.5239 141 7 -9.39 -1.1483 MIMAT0000850 rno-miR-144 499417 Sumo3 ucauGUAGUAGAU-AUGACAu ::|| |:|| |||||| cuguUGUCCUUUACUACUGUa 2 17 1116 1136 [rn4:20:11393981-11394001:-] 0.7822 124 6 -11.13 -1.3090 MIMAT0000851 rno-miR-145 499417 Sumo3 uccCUAAGGACCCUUUUGAC-CUg | |||:| ||||||| || aguGCUUCUU--AAAAACUGUGAg 2 21 497 518 [rn4:20:11394599-11394620:-] 0.5239 121 0 -10.41 -0.2775 MIMAT0000865 rno-miR-190 499417 Sumo3 ugGAUUAUAUAGUUUGUA-UAGu :| : | ||::||||| ||| caUUUGGAAAUUGAACAUGAUCu 2 21 657 679 [rn4:20:11394438-11394460:-] 0.5270 124 0 -8.11 -0.5215 MIMAT0000870 rno-miR-195 499417 Sumo3 cgGUUAUAAAGACACGACGAu :|| : | | ||||||| ugUAAGGAUCCAUUGCUGCUu 2 20 945 965 [rn4:20:11394152-11394172:-] 0.5270 147 7 -11.56 -0.2376 MIMAT0000871 rno-miR-196a 499417 Sumo3 ggGUUGUUGUACUUUGA-UGGAu :|:: || || ||| |||| uaUAGUCACCCGACACUGACCUa 2 21 985 1007 [rn4:20:11394110-11394132:-] 0.5270 120 0 -17.25 -0.3864 MIMAT0000874 rno-miR-200a 499417 Sumo3 ugUAG--CAAUGGUCUGUCACAAu ||| ||| | | ||||||| guAUCAAGUUUGCUG-CAGUGUUg 2 21 744 766 [rn4:20:11394351-11394373:-] 0.5270 149 7 -14.98 -0.2172 MIMAT0001082 rno-miR-196b 499417 Sumo3 ggGUUGUUGUCCUUUGA-UGGAu :|:: || || ||| |||| uaUAGUCACCCGACACUGACCUa 2 21 985 1007 [rn4:20:11394110-11394132:-] 0.5270 120 0 -16.87 -0.3834 MIMAT0003119 rno-miR-224 499417 Sumo3 auuugccuuGGUGAUCACUGAAc ||: | ||||||| ugguuuccuCCGGU-GUGACUUg 2 15 298 319 [rn4:20:11394798-11394819:-] 0.5239 144 7 -20.06 -0.1719 MIMAT0003193 rno-miR-494 499417 Sumo3 uccaaAGGGCAC---AUACAAAGu ||||| | ||||||| uaaagUCCCGAGGAAAAUGUUUCu 2 17 1024 1047 [rn4:20:11394070-11394093:-] 0.5270 147 7 -16.47 -0.2972 MIMAT0003213 rno-miR-503 499417 Sumo3 gacgucAUGACA-AGGGCG-ACGAu ||| | ||:||| |||| cugaccUACCAUCUCUCGCUUGCUu 2 18 1000 1024 [rn4:20:11394093-11394117:-] 0.5270 120 0 -18.21 -0.4219 MIMAT0003383 rno-miR-497 499417 Sumo3 augUUUGGUGUCACACGACGAc ::|:| || | ||||||| uaaGGAUC-CA-U-UGCUGCUu 2 20 947 965 [rn4:20:11394152-11394170:-] 0.5270 141 7 -13.07 -0.2236 MIMAT0005302 rno-miR-190b 499417 Sumo3 uuggaUUAUAGUUUGUA-UAGu :| ||::||||| ||| auuugGAAAUUGAACAUGAUCu 2 17 658 679 [rn4:20:11394438-11394459:-] 0.5270 124 0 -7.59 -0.5180 MIMAT0005303 rno-miR-196c 499417 Sumo3 ggGUUGUUGUGCUUUGA-UGGAu :|:: || ||| ||| |||| uaUAGUCACCCGACACUGACCUa 2 21 985 1007 [rn4:20:11394110-11394132:-] 0.5270 128 0 -16.87 -0.3864 MIMAT0005320 rno-miR-495 499417 Sumo3 uuCUUCACGUGGUACAAACAAa ||| | |||| ||||||| caGAAUUCCACC-CGUUUGUUg 2 21 397 417 [rn4:20:11394700-11394720:-] 0.5239 162 7 -13.90 -0.1420 MIMAT0005320 rno-miR-495 499417 Sumo3 uuCUUCACGUGGUACAAACAAa |::|| : : : ||||||| guGGGGUUUUUGGGGUUUGUUu 2 21 172 193 [rn4:20:11394924-11394945:-] 0.5239 148 7 -11.30 -0.2829 MIMAT0005339 rno-miR-873 499417 Sumo3 uccucugAGUGUUCAAGGACg || |||||||| uuaaaugUCUAUAGUUCCUGc 2 15 912 932 [rn4:20:11394185-11394205:-] 0.5270 146 7 -16.96 -0.3830

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101219 Sumo3 Rattus norvegicus 499417

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sumo3 RAID00039494 rno-miR-141-3p miRNA MIMAT0000846 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID00298445 rno-miR-7b miRNA MIMAT0000780 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID00405428 rno-miR-27a-3p miRNA MIMAT0000799 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID00656599 rno-miR-494-3p miRNA MIMAT0003193 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID00775068 rno-miR-200a-3p miRNA MIMAT0000874 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID00865515 rno-miR-139-5p miRNA MIMAT0000845 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID00925507 rno-miR-452-5p miRNA MIMAT0035748 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID01130054 rno-miR-195-5p miRNA MIMAT0000870 Sumo3 mRNA 499417 Prediction 0.2202 Sumo3 RAID01477521 rno-miR-503-5p miRNA MIMAT0003213 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID01495688 rno-miR-92b-5p miRNA MIMAT0017319 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID01515737 rno-miR-15a-5p miRNA MIMAT0035728 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID01638653 rno-miR-31a-5p miRNA MIMAT0000810 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID01853525 rno-miR-196c-5p miRNA MIMAT0005303 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID01894007 rno-miR-873-5p miRNA MIMAT0005339 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID01983282 rno-miR-295-5p miRNA MIMAT0012849 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02031783 rno-miR-495 miRNA MIMAT0005320 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02121922 rno-miR-322-5p miRNA MIMAT0001619 Sumo3 mRNA 499417 Prediction 0.2202 Sumo3 RAID02264210 rno-miR-23b-3p miRNA MIMAT0000793 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02343481 rno-miR-7a-5p miRNA MIMAT0000606 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02419018 rno-miR-190b-5p miRNA MIMAT0005302 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02425207 rno-miR-3589 miRNA MIMAT0017888 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02570970 rno-miR-224-5p miRNA MIMAT0003119 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02623534 rno-miR-190a-5p miRNA MIMAT0000865 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02628883 rno-miR-27b-3p miRNA MIMAT0000798 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02727684 rno-miR-145-5p miRNA MIMAT0000851 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID02731549 rno-miR-16-5p miRNA MIMAT0000785 Sumo3 mRNA 499417 Prediction 0.2202 Sumo3 RAID03025557 rno-miR-196a-5p miRNA MIMAT0000871 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID03054888 rno-miR-15b-5p miRNA MIMAT0000784 Sumo3 mRNA 499417 Prediction 0.2202 Sumo3 RAID03251420 rno-miR-199a-3p miRNA MIMAT0004738 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID03376266 rno-miR-196b-5p miRNA MIMAT0001082 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID03501471 rno-miR-497-5p miRNA MIMAT0003383 Sumo3 mRNA 499417 Prediction 0.2202 Sumo3 RAID03725021 rno-miR-101b-3p miRNA MIMAT0000615 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID03931626 rno-miR-101a-3p miRNA MIMAT0000823 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID03991566 rno-miR-144-3p miRNA MIMAT0000850 Sumo3 mRNA 499417 Prediction 0.1828 Sumo3 RAID04024302 rno-miR-23a-3p miRNA MIMAT0000792 Sumo3 mRNA 499417 Prediction 0.1828