DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004720 rno-miR-30e* 288077 Hcls1 cgACAUUUGUAGGCUGACUUUc | ||: | | ||||||| ugUUUAGUCCUAAAACUGAAAa 2 21 441 462 [rn4:11:65619727-65619748:-] 0.5636 148 7 -11.47 -1.1946 MIMAT0004722 rno-miR-30d* 288077 Hcls1 cgucGUUUGUAGACUGACUUUc :|: | | ||||||| uguuUAGUCCUAAAACUGAAAa 2 19 441 462 [rn4:11:65619727-65619748:-] 0.5636 142 7 -8.74 -1.1946 MIMAT0000809 rno-miR-30a* 288077 Hcls1 cgACGUUUGUAGGCUGACUUUc | :|: | | ||||||| ugUUUAGUCCUAAAACUGAAAa 2 21 441 462 [rn4:11:65619727-65619748:-] 0.5636 144 7 -10.68 -1.1946 MIMAT0005279 rno-miR-466c 288077 Hcls1 guaCAUGUAC--GUGUGUAGUGu | || || :: ||||||| caaGGACUUGACUGAACAUCACg 2 19 71 93 [rn4:11:65620096-65620118:-] 0.5113 145 7 -15.07 -0.2408 MIMAT0005280 rno-miR-743b 288077 Hcls1 agauaagucauaccACAGAAAg ||||||| --------ugagcuUGUCUUUu 2 9 1 14 [rn4:11:65620175-65620188:-] 0.6707 140 7 -6.85 -0.3403 MIMAT0005285 rno-miR-877 288077 Hcls1 ggGACGCGG-UAGAG-GAGAUg || :||: | ||| ||||| agCUCUGCUGACCUCUCUCUAg 2 19 287 308 [rn4:11:65619881-65619902:-] 0.5636 121 0 -21.56 -0.3268 MIMAT0005308 rno-miR-380 288077 Hcls1 gcguacaagauaccAGUUGGUa ||||||| cagcccugccucuuUCAACCAc 2 9 260 281 [rn4:11:65619908-65619929:-] 0.5636 140 7 -10.71 -0.4571 MIMAT0000553 rno-miR-324-5p 288077 Hcls1 ugUGGUUACGGGAUCCCCUACGc ||::| | : | ||||||| ugACUGA-ACAUCACGGGAUGCc 2 22 79 100 [rn4:11:65620089-65620110:-] 0.5218 147 7 -15.13 -0.2272 MIMAT0000562 rno-let-7d 288077 Hcls1 uugauacGUUG-GAUGA-UGGAGa ||:| ||:|| ||||| cacacccCAGCUCUGCUGACCUCu 2 16 279 302 [rn4:11:65619887-65619910:-] 0.5636 122 0 -20.16 -0.1863 MIMAT0000774 rno-let-7a 288077 Hcls1 uugauauGUUG-GAUGA-UGGAGu ||:| ||:|| ||||| cacacccCAGCUCUGCUGACCUCu 2 16 279 302 [rn4:11:65619887-65619910:-] 0.5636 122 0 -18.02 -0.1881 MIMAT0000775 rno-let-7b 288077 Hcls1 uuGGUGU---GUUG-GAUGA-UGGAGu ||||| ||:| ||:|| ||||| aaCCACACCCCAGCUCUGCUGACCUCu 2 21 276 302 [rn4:11:65619887-65619913:-] 0.5636 130 0 -27.00 -0.1863 MIMAT0000776 rno-let-7c 288077 Hcls1 uugguauGUUG-GAUGA-UGGAGu ||:| ||:|| ||||| cacacccCAGCUCUGCUGACCUCu 2 16 279 302 [rn4:11:65619887-65619910:-] 0.5636 122 0 -20.79 -0.1881 MIMAT0000778 rno-let-7f 288077 Hcls1 uugauauGUU-AGAUGA-UGGAGu ||: |||:|| ||||| cacacccCAGCUCUGCUGACCUCu 2 16 279 302 [rn4:11:65619887-65619910:-] 0.5636 122 0 -16.42 -0.1881 MIMAT0000779 rno-let-7i 288077 Hcls1 uuGUCGUGUU-UGAUGA-UGGAGu || | ||: ||:|| ||||| caCACCCCAGCUCUGCUGACCUCu 2 21 279 302 [rn4:11:65619887-65619910:-] 0.5636 123 0 -18.18 -0.1881 MIMAT0000819 rno-miR-98 288077 Hcls1 uuGUUAUGUUGA-AUGA-UGGAGu || ||:|| |:|| ||||| caCACCCCAGCUCUGCUGACCUCu 2 21 279 302 [rn4:11:65619887-65619910:-] 0.5636 123 0 -17.09 -0.1881 MIMAT0000849 rno-miR-143 288077 Hcls1 acUCGAUGUCACGAAGUAGAGu | || || | ||||||| guAACU-CAUGGAAUCAUCUCg 2 21 239 259 [rn4:11:65619930-65619950:-] 0.5636 146 7 -15.23 -0.3404 MIMAT0000852 rno-miR-146a 288077 Hcls1 uuGGGUACCUUAAG--UCAA-GAGu ||| ||| :||| |||| ||| aaCCCCUGGUGUUCGAAGUUGCUCu 2 21 15 39 [rn4:11:65620150-65620174:-] 0.5007 131 0 -19.74 -0.1020 MIMAT0000892 rno-miR-223 288077 Hcls1 ccccAUAAA-CUG---UUUGACUgu |:||| | | ||||||| cuucUGUUUAGUCCUAAAACUGAaa 3 18 437 461 [rn4:11:65619728-65619752:-] 0.5636 127 0 -7.73 -0.1171 MIMAT0001626 rno-miR-431 288077 Hcls1 acguacugccggaCGUUCUGu ||||||| aacugaaaauaaaGCAAGACu 2 9 454 474 [rn4:11:65619715-65619735:-] 0.5636 140 7 -11.64 -1.0617 MIMAT0003379 rno-miR-378 288077 Hcls1 ggaaGACUGAGGUUCA-GGUCa | ||| |::||| |||| caccCCGACCCUGAGUGCCAGc 2 18 325 346 [rn4:11:65619843-65619864:-] 0.5636 125 0 -18.38 -0.3034 MIMAT0005595 rno-miR-146b 288077 Hcls1 ugUCGGAUACCUUAAG--UCAA-GAGu | || ||| :||| |||| ||| uuAACCCCUGGUGUUCGAAGUUGCUCu 2 23 13 39 [rn4:11:65620150-65620176:-] 0.5007 125 0 -15.33 -0.1020

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Hcls1 RAID00704445 rno-miR-378a-3p miRNA MIMAT0003379 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID00765180 rno-miR-98-5p miRNA MIMAT0000819 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID01062312 rno-let-7a-5p miRNA MIMAT0000774 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID01148719 rno-let-7d-5p miRNA MIMAT0000562 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID01182578 rno-miR-324-5p miRNA MIMAT0000553 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID01260766 rno-let-7i-5p miRNA MIMAT0000779 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID01376125 rno-miR-143-3p miRNA MIMAT0000849 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID01580960 rno-miR-3584-5p miRNA MIMAT0017875 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID01633341 rno-let-7c-5p miRNA MIMAT0000776 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID01798975 rno-miR-146b-5p miRNA MIMAT0005595 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID02280821 rno-miR-146a-5p miRNA MIMAT0000852 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID02487943 rno-let-7f-5p miRNA MIMAT0000778 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID02551044 rno-miR-223-3p miRNA MIMAT0000892 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID03141212 rno-miR-431 miRNA MIMAT0001626 Hcls1 mRNA 288077 Prediction 0.1828 Hcls1 RAID03380505 rno-let-7b-5p miRNA MIMAT0000775 Hcls1 mRNA 288077 Prediction 0.1828