DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 84478 Ufd1l ggucGUCGUGGACCCCGUCACc | |:||| |||||||| auguCUGUACC-CGGGCAGUGu 2 19 302 322 [rn4:11_random:1173795-1173815:-] 0.5027 156 7 -23.26 -0.2013 MIMAT0000607 rno-miR-7a* 84478 Ufd1l uaccGUCU-GACACUAAACA-ACa |||| ||| ||||| || uccuCAGAGCUGCACUUUGUAUGa 2 19 652 675 [rn4:11_random:1173442-1173465:-] 0.5217 121 0 -12.02 -0.7452 MIMAT0005445 rno-miR-29b-1* 84478 Ufd1l uuuAGAUUUGGU---GGUA-UACUUu ||| |:| | |||| ||||| cacUCUCAGCGAAUUCCAUGAUGAAg 2 20 445 470 [rn4:11_random:1173647-1173672:-] 0.5215 122 0 -11.79 -0.2628 MIMAT0000894 rno-miR-291a-5p 84478 Ufd1l ucucUCCCGGAGGUGAAAC-UAc || | || ||||||| || ccucAGAG-CUGCACUUUGUAUg 2 19 653 674 [rn4:11_random:1173443-1173464:-] 0.5217 124 0 -18.17 -0.4311 MIMAT0000900 rno-miR-298 84478 Ufd1l cccUUCUUGUCGGGAG-GAGACGg ||| |:: | | | |||||| aucAAGCAUGCCACACACUCUGCc 2 21 587 610 [rn4:11_random:1173507-1173530:-] 0.5217 124 6 -21.93 -0.2941 MIMAT0003382 rno-miR-664 84478 Ufd1l aucCGACCCCUCAUUUACUUAu || || || ||||||| uguGCAAGGCAG--AAUGAAUa 2 20 476 495 [rn4:11_random:1173622-1173641:-] 0.5215 148 7 -10.46 -0.2927 MIMAT0005280 rno-miR-743b 84478 Ufd1l agAUAAGUCAUACCACAGAAAg || |:| : |||||||| ugUACCCGG-GCAGUGUCUUUa 2 21 307 327 [rn4:11_random:1173790-1173810:-] 0.5027 146 7 -13.15 -0.2888 MIMAT0005301 rno-miR-188 84478 Ufd1l gggaggUGGUACGUUCCCUAc ||: | ||||||| acagugACUCAG-AAGGGAUc 2 16 390 409 [rn4:11_random:1173708-1173727:-] 0.5215 141 7 -13.90 -0.2348 MIMAT0005334 rno-miR-743a 84478 Ufd1l agaUGGGUCAAACCGCAGAAAg || || |||||||||| cugACAAAG-AUGGCGUCUUUu 2 20 363 383 [rn4:11_random:1173734-1173754:-] 0.5215 157 7 -20.89 -0.4332 MIMAT0012827 rno-miR-1224 84478 Ufd1l gaGGUGGAGGGGUCAGGAGUg |::::|: |: ||||||| uaCUGUUUUACU-GUCCUCAg 2 20 639 658 [rn4:11_random:1173459-1173478:-] 0.5217 149 7 -18.41 -0.5111 MIMAT0012827 rno-miR-1224 84478 Ufd1l gaGGUGGAGGGGUCAGG-AGUg | :: ||:::||||| ||| ggCAGUGUCUUUAGUCCAUCAu 2 20 315 336 [rn4:11_random:1173781-1173802:-] 0.5027 123 0 -20.23 -0.1324 MIMAT0012828 rno-miR-362 84478 Ufd1l uaAGUGU-GGAUCCAAGGUUCCUAa | |:| ::|: ||:||||||| ucUGAUAGUUUGUUUUUCAAGGAUa 2 23 538 562 [rn4:11_random:1173555-1173579:-] 0.5217 157 7 -13.74 -1.0795 MIMAT0012848 rno-miR-294 84478 Ufd1l ucuaUCCCGGAG-GUAAAACUc | | ||| |||||||| augaAUGCACUCUCAUUUUGAu 2 18 418 439 [rn4:11_random:1173678-1173699:-] 0.5215 152 7 -13.37 -0.2471 MIMAT0012848 rno-miR-294 84478 Ufd1l ucuaucccggagguAAAACUc |||||| cuugagaauaauucUUUUGAa 2 8 721 741 [rn4:11_random:1173376-1173396:-] 0.5217 120 6 -6.31 -0.1741 MIMAT0012856 rno-miR-759 84478 Ufd1l caguuuuaacaaacGUGAGACg ||||||| ucaagcaugccacaCACUCUGc 2 9 588 609 [rn4:11_random:1173508-1173529:-] 0.5217 140 7 -16.79 -0.2551 MIMAT0000552 rno-miR-301a 84478 Ufd1l cgaaacUGUUAUGAUAACG-UGAc | :|| | ||||| ||| aaauaaAAGAUCCGAUUGCAACUg 2 18 25 48 [rn4:11_random:1174069-1174092:-] 0.5946 121 0 -10.72 -0.4705 MIMAT0000552 rno-miR-301a 84478 Ufd1l cgaaacUGUUAUGAUAACG-UGAc | :|| | ||||| ||| aaauaaAAGAUCCGAUUGCAACU- 2 18 25 47 [rn4:11_random:1174070-1174092:-] 0.6647 121 0 -6.07 -0.9625 MIMAT0000602 rno-miR-20a 84478 Ufd1l gaugGACGUGA-UAUU--CGUGAAAu |||: || | |: ||||||| uuuaCUGUCCUCAGAGCUGCACUUUg 2 20 645 670 [rn4:11_random:1173447-1173472:-] 0.5217 149 7 -16.65 -0.6237 MIMAT0000786 rno-miR-17-5p 84478 Ufd1l gaugGACGUGACAUU---CGUGAAAc |||: || :| ||||||| uuuaCUGUCCUCAGAGCUGCACUUUg 2 20 645 670 [rn4:11_random:1173447-1173472:-] 0.5217 146 7 -18.93 -0.6200 MIMAT0000817 rno-miR-93 84478 Ufd1l gauGGACGUGCUUGUCGUGAAAc ||| || ||:| ||||||| uguCCU-CA-GAGCUGCACUUUg 2 21 650 670 [rn4:11_random:1173447-1173467:-] 0.5217 160 7 -23.71 -0.6237 MIMAT0000825 rno-miR-106b 84478 Ufd1l uaGACGUGA--C-AGUCGUGAAAu |||: || | | ||||||| uaCUGUCCUCAGAGCUGCACUUUg 2 20 647 670 [rn4:11_random:1173447-1173470:-] 0.5217 145 7 -16.88 -0.6200 MIMAT0000833 rno-miR-127 84478 Ufd1l ucgguucgagucugcCUAGGCu |||||| gacgggaaaauaaaaGAUCCGa 2 8 18 39 [rn4:11_random:1174078-1174099:-] 0.6647 120 6 -15.68 -0.2367 MIMAT0000833 rno-miR-127 84478 Ufd1l ucgguucgagucugcCUAGGCu |||||| gacgggaaaauaaaaGAUCCGa 2 8 18 39 [rn4:11_random:1174078-1174099:-] 0.6647 120 6 -15.68 -0.1734 MIMAT0000863 rno-miR-186 84478 Ufd1l ucGGGUUUUCCUCUUAAGAAAc :|| :|| | |||||||| guUCCUUGAGAAUAAUUCUUUu 2 21 717 738 [rn4:11_random:1173379-1173400:-] 0.5217 160 7 -11.26 -1.0152 MIMAT0000885 rno-miR-214 84478 Ufd1l gacggacAGACACGG-ACGACa |:| |||| ||||| guaagauUUUUUGCCAUGCUGa 2 15 677 698 [rn4:11_random:1173419-1173440:-] 0.5217 122 0 -13.27 -0.8756 MIMAT0003117 rno-miR-361 84478 Ufd1l caUGGGGACCUCUAAGACUAUu |||| ||| |||||||| uuACCCAUGG---UUCUGAUAg 2 21 527 545 [rn4:11_random:1173572-1173590:-] 0.5217 160 7 -22.00 -0.5929 MIMAT0003179 rno-miR-542-3p 84478 Ufd1l aaAGUCAAUAGUUAGAC-AGUGu ||| || |::||||| |||| ucUCA-UU-UUGAUCUGCUCACu 2 21 428 448 [rn4:11_random:1173669-1173689:-] 0.5215 128 0 -11.03 -0.3248 MIMAT0003211 rno-miR-20b-5p 84478 Ufd1l ugGACGUGAUACU---CGUGAAAc |||: || || ||||||| uaCUGUCCUCAGAGCUGCACUUUg 2 20 647 670 [rn4:11_random:1173447-1173470:-] 0.5217 150 7 -17.42 -0.6237 MIMAT0005304 rno-miR-301b 84478 Ufd1l cgaaacUGUUAUGGUAACG-UGAc | :|| | ||||| ||| aaauaaAAGAUCCGAUUGCAACUg 2 18 25 48 [rn4:11_random:1174069-1174092:-] 0.5946 121 0 -13.01 -0.4705 MIMAT0005304 rno-miR-301b 84478 Ufd1l cgaaacUGUUAUGGUAACG-UGAc | :|| | ||||| ||| aaauaaAAGAUCCGAUUGCAACU- 2 18 25 47 [rn4:11_random:1174070-1174092:-] 0.6647 121 0 -8.36 -0.9625 MIMAT0005320 rno-miR-495 84478 Ufd1l uucuuCACGUGGUA-CAAACAAa || ::|| ||||||| gcucuGUUAUUUAUGGUUUGUUu 2 18 83 105 [rn4:11_random:1174012-1174034:-] 0.5244 144 7 -9.42 -0.7079 MIMAT0005320 rno-miR-495 84478 Ufd1l uucuUCACGUGGUA-CAAACAAa :|| | : || ||||||| ccauGGUUC-UGAUAGUUUGUUu 2 19 531 552 [rn4:11_random:1173565-1173586:-] 0.5217 143 7 -8.48 -0.9401

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G053350 Ufd1l Rattus norvegicus 84478

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ufd1l RAID00023063 rno-miR-93-5p miRNA MIMAT0000817 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID00516951 rno-miR-301b-3p miRNA MIMAT0005304 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID00933442 rno-miR-20a-5p miRNA MIMAT0000602 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID01227825 rno-miR-361-5p miRNA MIMAT0003117 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID01600690 rno-miR-186-5p miRNA MIMAT0000863 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID01607410 rno-miR-883-5p miRNA MIMAT0017294 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID01865736 rno-miR-328a-5p miRNA MIMAT0017029 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID02178898 rno-miR-495 miRNA MIMAT0005320 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID02259146 rno-miR-20b-5p miRNA MIMAT0003211 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID02280143 rno-miR-1199-5p miRNA MIMAT0031125 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID02745358 rno-miR-214-3p miRNA MIMAT0000885 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID02782699 rno-miR-127-3p miRNA MIMAT0000833 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID02903987 rno-miR-17-5p miRNA MIMAT0000786 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID03128290 rno-miR-301a-3p miRNA MIMAT0000552 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID03222158 rno-miR-106b-5p miRNA MIMAT0000825 Ufd1l mRNA 84478 Prediction 0.1828 Ufd1l RAID03851269 rno-miR-542-3p miRNA MIMAT0003179 Ufd1l mRNA 84478 Prediction 0.1828