DNA & RNA Element - microRNA |
Mirbase Acc | miRNA Name | Gene ID | Gene Symbol | miRNA Alignment | Alignment | Gene Alignment | miRNA Start | miRNA End | Gene Start | Gene End | Genome Coordinates | Conservation | Align Score | Seed Cat | Energy | mirSVR Score |
MIMAT0004652 | rno-miR-342-5p | 361190 | Usp19 | gaguuAGUGUCUAUCGUGGGGa | || || |||||||| | ggggcUCUGAGCCAGCACCCCc | 2 | 18 | 342 | 363 | [rn4:16_random:1241678-1241699:+] | 0.5828 | 153 | 7 | -19.94 | -0.1418 |
MIMAT0004711 | rno-miR-21* | 361190 | Usp19 | cugucggguaGCUGACGACAAc | | :|||||||| | uuggaagugaCUGCUGCUGUUu | 2 | 13 | 841 | 862 | [rn4:16_random:1242177-1242198:+] | 0.7190 | 148 | 7 | -16.75 | -1.1787 |
MIMAT0000831 | rno-miR-126* | 361190 | Usp19 | gcgcAUGGUU-UUCAUUAUUac | || || || |||||| | auuuUAAAAAUAAAUAAUAAau | 3 | 18 | 869 | 890 | [rn4:16_random:1242205-1242226:+] | 0.7190 | 132 | 0 | -1.70 | -0.2609 |
MIMAT0000898 | rno-miR-296* | 361190 | Usp19 | uguccuaacucccCCCCGGGa | ||||||| | cugcgccugccuaGGGGCCCu | 2 | 9 | 309 | 329 | [rn4:16_random:1241645-1241665:+] | 0.5828 | 140 | 7 | -19.08 | -0.1312 |
MIMAT0000901 | rno-miR-299 | 361190 | Usp19 | uacauacacccugccAUUUGGu | |||||| | aaaauaaauaauaaaUAAACCg | 2 | 8 | 875 | 896 | [rn4:16_random:1242211-1242232:+] | 0.6442 | 120 | 6 | -7.15 | -0.2489 |
MIMAT0000902 | rno-miR-300-3p | 361190 | Usp19 | cuucucucgaacGGGAACGUAu | :::|||||| | aaaaauuguaauUUUUUGCAUu | 2 | 11 | 819 | 840 | [rn4:16_random:1242155-1242176:+] | 0.7190 | 126 | 6 | -8.17 | -0.1844 |
MIMAT0003174 | rno-miR-540 | 361190 | Usp19 | gguccuagcuGGAGACUGGa | :|||||||| | uccuccuguuUCUCUGACCc | 2 | 11 | 183 | 202 | [rn4:16_random:1241519-1241538:+] | 0.5828 | 146 | 7 | -18.68 | -0.2964 |
MIMAT0003174 | rno-miR-540 | 361190 | Usp19 | ggucCUAGCUGGAGACUGGa | |||: ::||||||| | cuucGAUU-CUUUCUGACCu | 2 | 17 | 776 | 794 | [rn4:16_random:1242112-1242130:+] | 0.7190 | 146 | 7 | -19.12 | -1.2024 |
MIMAT0003174 | rno-miR-540 | 361190 | Usp19 | gguccuagcuGGAGACUGGa | :|||||||| | uccuccuguuUCUCUGACCc | 2 | 11 | 183 | 202 | [rn4:16_random:1241519-1241538:+] | 0.5828 | 146 | 7 | -18.68 | -0.4919 |
MIMAT0003191 | rno-miR-493 | 361190 | Usp19 | gaCCGUGUGUCAUC-UGGAAGu | ||: | |:|| | |||||| | uuGGUUCUCGGUUGUACCUUCg | 2 | 20 | 759 | 780 | [rn4:16_random:1242095-1242116:+] | 0.7190 | 127 | 6 | -21.12 | -0.9169 |
MIMAT0003205 | rno-miR-409-3p | 361190 | Usp19 | ccccaaGUGGCUCGUUGUAa | |:: |||||||| | cccccaCGUACAGCAACAUg | 2 | 15 | 504 | 523 | [rn4:16_random:1241840-1241859:+] | 0.6848 | 146 | 7 | -11.64 | -0.2297 |
MIMAT0005323 | rno-miR-532-3p | 361190 | Usp19 | acguuCGGAACCCACACCCUCc | ||||| | ||||||| | ggccuGCCUUUGUGGUGGGAGa | 2 | 18 | 53 | 74 | [rn4:16_random:1241389-1241410:+] | 0.5828 | 161 | 7 | -25.52 | -0.2125 |
MIMAT0005323 | rno-miR-532-3p | 361190 | Usp19 | acguucggaacccaCACCCUCc | ||||||| | aguguauguaucugGUGGGAGa | 2 | 9 | 96 | 117 | [rn4:16_random:1241432-1241453:+] | 0.5828 | 140 | 7 | -16.66 | -0.6121 |
MIMAT0005323 | rno-miR-532-3p | 361190 | Usp19 | acguuCGGAACCCACACCCUCc | ||||| | ||||||| | ggccuGCCUUUGUGGUGGGAGa | 2 | 18 | 53 | 74 | [rn4:16_random:1241389-1241410:+] | 0.5828 | 161 | 7 | -25.52 | -0.3077 |
MIMAT0005323 | rno-miR-532-3p | 361190 | Usp19 | acguucggaacccaCACCCUCc | ||||||| | aguguauguaucugGUGGGAGa | 2 | 9 | 96 | 117 | [rn4:16_random:1241432-1241453:+] | 0.5828 | 140 | 7 | -16.66 | -0.7676 |
MIMAT0005329 | rno-miR-674-5p | 361190 | Usp19 | auguggUGAGGGU-AGAGUCACg | :|||: | ||||||| | cucuggGCUCUGAGCCUCAGUGu | 2 | 17 | 78 | 100 | [rn4:16_random:1241414-1241436:+] | 0.5828 | 147 | 7 | -17.77 | -0.2347 |
MIMAT0005329 | rno-miR-674-5p | 361190 | Usp19 | auguggUGAGGGU-AGAGUCACg | :|||: | ||||||| | cucuggGCUCUGAGCCUCAGUGu | 2 | 17 | 78 | 100 | [rn4:16_random:1241414-1241436:+] | 0.5828 | 147 | 7 | -17.77 | -0.3369 |
MIMAT0005333 | rno-miR-742 | 361190 | Usp19 | aaaUG-GGUUGUAC--CACCGAAAg | || ::|:|| | ||||||| | cccACAUUAGCAGGCCUUGGCUUUu | 2 | 20 | 710 | 734 | [rn4:16_random:1242046-1242070:+] | 0.6667 | 145 | 7 | -15.86 | -0.2561 |
MIMAT0012824 | rno-miR-513 | 361190 | Usp19 | uacUUUCUGUGGAAGAA-CACUu | ||| | ||| ||| |||| | aauAAAUAAACCGACUUAGUGAc | 2 | 20 | 884 | 906 | [rn4:16_random:1242220-1242242:+] | 0.6442 | 127 | 0 | -9.53 | -0.5087 |
MIMAT0012826 | rno-miR-220 | 361190 | Usp19 | uccagaGACUGUGACACCACc | ||| | :||||||| | acaggcCUGCCUUUGUGGUGg | 2 | 16 | 50 | 70 | [rn4:16_random:1241386-1241406:+] | 0.5828 | 155 | 7 | -24.74 | -0.1313 |
MIMAT0012827 | rno-miR-1224 | 361190 | Usp19 | gaGGUGGAGGGGUCAGGAGUg | || | |||| ||||||| | acCCCCAACCCCUGUCCUCAu | 2 | 20 | 389 | 409 | [rn4:16_random:1241725-1241745:+] | 0.6338 | 163 | 7 | -29.17 | -0.6731 |
MIMAT0012827 | rno-miR-1224 | 361190 | Usp19 | gagguGGAGGGGUCAG-GAGUg | ::||::| ||| |||| | auuuuUUUCUUCUGUCACUCAg | 2 | 17 | 601 | 622 | [rn4:16_random:1241937-1241958:+] | 0.6049 | 120 | 0 | -17.21 | -0.4070 |
MIMAT0012839 | rno-miR-668 | 361190 | Usp19 | ccaucacccGGCUCGGCUCACUGu | |||| |: |||||| | auaaauaaaCCGA-CUUAGUGACu | 2 | 16 | 885 | 907 | [rn4:16_random:1242221-1242243:+] | 0.6442 | 125 | 6 | -17.49 | -0.1052 |
MIMAT0012848 | rno-miR-294 | 361190 | Usp19 | ucuaucccGGAGGUAAAACUc | ::| |||||||: | uguaauuuUUUGCAUUUUGGa | 2 | 14 | 825 | 845 | [rn4:16_random:1242161-1242181:+] | 0.7190 | 133 | 0 | -9.28 | -0.1238 |
MIMAT0012850 | rno-miR-465 | 361190 | Usp19 | gugUG-GUCGUGGCAAGAUUUau | || :| : :: ||||||| | uaaACAUAAUUUUAUUCUAAAaa | 3 | 20 | 801 | 823 | [rn4:16_random:1242137-1242159:+] | 0.7190 | 126 | 0 | -6.64 | -0.5480 |
MIMAT0012853 | rno-miR-761 | 361190 | Usp19 | acacagucaaaguggGACGACg | |||||| | gcauuuuggaagugaCUGCUGc | 2 | 8 | 836 | 857 | [rn4:16_random:1242172-1242193:+] | 0.7190 | 120 | 6 | -17.25 | -0.2409 |
MIMAT0001619 | rno-miR-322 | 361190 | Usp19 | agguUUUGUACUUAACGACGAc | ::| :|| | ||||||| | uuuuGGAAGUG-ACUGCUGCUg | 2 | 19 | 839 | 859 | [rn4:16_random:1242175-1242195:+] | 0.7190 | 148 | 7 | -16.89 | -1.0945 |
MIMAT0000564 | rno-miR-328 | 361190 | Usp19 | ugccuucccGUCUCUCCCGGUc | :| ||||||||| | gagauccccUACAGAGGGCCAu | 2 | 14 | 572 | 593 | [rn4:16_random:1241908-1241929:+] | 0.6049 | 153 | 7 | -17.12 | -0.1753 |
MIMAT0000566 | rno-miR-329 | 361190 | Usp19 | uuUUUCCAAUCGACCCACACAa | |:|| | : |||||||| | gcAGAGUAUCCUAGGGUGUGUg | 2 | 21 | 145 | 166 | [rn4:16_random:1241481-1241502:+] | 0.5828 | 152 | 7 | -16.64 | -0.1805 |
MIMAT0000566 | rno-miR-329 | 361190 | Usp19 | uuUUUCCAAUCGACCCACACAa | |:|| | : |||||||| | gcAGAGUAUCCUAGGGUGUGUg | 2 | 21 | 145 | 166 | [rn4:16_random:1241481-1241502:+] | 0.5828 | 152 | 7 | -16.64 | -0.2407 |
MIMAT0000784 | rno-miR-15b | 361190 | Usp19 | acauuuggUACUACACGACGAu | :||| ||||||| | uuuuggaaGUGA-CUGCUGCUg | 2 | 15 | 839 | 859 | [rn4:16_random:1242175-1242195:+] | 0.7190 | 144 | 7 | -15.21 | -1.0992 |
MIMAT0000785 | rno-miR-16 | 361190 | Usp19 | gcGGUUAUAAAUGCACGACGAu | :::: | | || ||||||| | uuUUGGAAGUGAC-UGCUGCUg | 2 | 21 | 839 | 859 | [rn4:16_random:1242175-1242195:+] | 0.7190 | 146 | 7 | -15.09 | -1.0781 |
MIMAT0000788 | rno-miR-19b | 361190 | Usp19 | agucaaAACGUACCUAAACGUGu | |||:| ||||||: | uaaaaaUUGUAAUUUUUUGCAUu | 2 | 18 | 818 | 840 | [rn4:16_random:1242154-1242176:+] | 0.7190 | 133 | 0 | -9.70 | -0.1493 |
MIMAT0000789 | rno-miR-19a | 361190 | Usp19 | agucaaAACGUAUCUAAACGUGu | |||:| ||||||: | uaaaaaUUGUAAUUUUUUGCAUu | 2 | 18 | 818 | 840 | [rn4:16_random:1242154-1242176:+] | 0.7190 | 133 | 0 | -9.70 | -0.1493 |
MIMAT0000794 | rno-miR-24 | 361190 | Usp19 | gacaagGACGACUU--GACUCGGu | || |||:: ||||||| | agacagCU-CUGGGCUCUGAGCCu | 2 | 17 | 72 | 94 | [rn4:16_random:1241408-1241430:+] | 0.5828 | 145 | 7 | -19.53 | -0.1841 |
MIMAT0000794 | rno-miR-24 | 361190 | Usp19 | gacaagGACGACUU--GACUCGGu | || |||:: ||||||| | agacagCU-CUGGGCUCUGAGCCu | 2 | 17 | 72 | 94 | [rn4:16_random:1241408-1241430:+] | 0.5828 | 145 | 7 | -19.53 | -0.2696 |
MIMAT0000804 | rno-miR-30c | 361190 | Usp19 | cgACUCUCAC--AU-CCUACAAAUgu | ||: |||| |: | |||||| | uuUGGAAGUGACUGCUGCUGUUUAaa | 3 | 22 | 840 | 865 | [rn4:16_random:1242176-1242201:+] | 0.7190 | 131 | 0 | -10.79 | -0.2923 |
MIMAT0000805 | rno-miR-30e | 361190 | Usp19 | gaaggucaguucCUACAAAUgu | | |||||| | gaagugacugcuGCUGUUUAaa | 3 | 11 | 844 | 865 | [rn4:16_random:1242180-1242201:+] | 0.7190 | 122 | 0 | -4.50 | -0.2948 |
MIMAT0000806 | rno-miR-30b-5p | 361190 | Usp19 | ucgACUCACAUCCUACAAAUgu | ||| || | |||||| | aagUGACUG-CUGCUGUUUAaa | 3 | 20 | 845 | 865 | [rn4:16_random:1242181-1242201:+] | 0.7190 | 129 | 0 | -7.57 | -0.2923 |
MIMAT0000807 | rno-miR-30d | 361190 | Usp19 | gaaggucagcccCUACAAAUgu | | |||||| | gaagugacugcuGCUGUUUAaa | 3 | 11 | 844 | 865 | [rn4:16_random:1242180-1242201:+] | 0.7190 | 122 | 0 | -5.97 | -0.2923 |
MIMAT0000808 | rno-miR-30a | 361190 | Usp19 | gaaggucagcucCUACAAAUgu | | |||||| | gaagugacugcuGCUGUUUAaa | 3 | 11 | 844 | 865 | [rn4:16_random:1242180-1242201:+] | 0.7190 | 122 | 0 | -6.12 | -0.2948 |
MIMAT0000824 | rno-miR-103 | 361190 | Usp19 | aguaucgggacauguuACGACGa | |||||| | gcauuuuggaagugacUGCUGCu | 2 | 8 | 836 | 858 | [rn4:16_random:1242172-1242194:+] | 0.7190 | 120 | 6 | -14.30 | -0.3184 |
MIMAT0000826 | rno-miR-107 | 361190 | Usp19 | acuaucgggacauguuACGACGa | |||||| | gcauuuuggaagugacUGCUGCu | 2 | 8 | 836 | 858 | [rn4:16_random:1242172-1242194:+] | 0.7190 | 120 | 6 | -13.88 | -0.3184 |
MIMAT0000838 | rno-miR-132 | 361190 | Usp19 | gcUGGUACCGACAUCUG-ACAAu | |:| |||: | |||| |||| | guAUC-UGGUGGGAGACUUGUUg | 2 | 21 | 103 | 124 | [rn4:16_random:1241439-1241460:+] | 0.5828 | 126 | 0 | -17.03 | -0.1155 |
MIMAT0000838 | rno-miR-132 | 361190 | Usp19 | gcUGGUACCGACAUCUG-ACAAu | |:| |||: | |||| |||| | guAUC-UGGUGGGAGACUUGUUg | 2 | 21 | 103 | 124 | [rn4:16_random:1241439-1241460:+] | 0.5828 | 126 | 0 | -17.03 | -0.1741 |
MIMAT0000842 | rno-miR-136 | 361190 | Usp19 | agGUAGUAGUUUUGUU-UACCUCa | || |:| | |:||| |||||| | ccCA-CGU-ACAGCAACAUGGAGg | 2 | 22 | 506 | 527 | [rn4:16_random:1241842-1241863:+] | 0.6848 | 125 | 6 | -18.44 | -0.4857 |
MIMAT0000846 | rno-miR-141 | 361190 | Usp19 | gguagaaauggucugUCACAAu | |||||| | auuuccuguauuuaaAGUGUUa | 2 | 8 | 233 | 254 | [rn4:16_random:1241569-1241590:+] | 0.5828 | 120 | 6 | -10.72 | -0.2043 |
MIMAT0000853 | rno-miR-150 | 361190 | Usp19 | gugaCCAUGUUCCCAACCCUCu | || :| :|| ||||||| | uggaGGGGCUGGGUUUGGGAGa | 2 | 19 | 554 | 575 | [rn4:16_random:1241890-1241911:+] | 0.6448 | 158 | 7 | -23.19 | -0.2639 |
MIMAT0000863 | rno-miR-186 | 361190 | Usp19 | ucggguuuuccucUUAAGAAAc | :||||||| | cgguuguaccuucGAUUCUUUc | 2 | 10 | 767 | 788 | [rn4:16_random:1242103-1242124:+] | 0.7190 | 141 | 7 | -6.53 | -0.5596 |
MIMAT0000870 | rno-miR-195 | 361190 | Usp19 | cgguuauaaagacACGACGAu | ||||||| | uuuuggaagugacUGCUGCUg | 2 | 9 | 839 | 859 | [rn4:16_random:1242175-1242195:+] | 0.7190 | 140 | 7 | -12.11 | -1.0968 |
MIMAT0000872 | rno-miR-199a-5p | 361190 | Usp19 | cuuGUCCAUCAGACU--UGUGACCc | | | | || || ||||||| | cuuCUGUCACUCAGAGGACACUGGc | 2 | 21 | 609 | 633 | [rn4:16_random:1241945-1241969:+] | 0.6096 | 147 | 7 | -18.96 | -0.2531 |
MIMAT0000874 | rno-miR-200a | 361190 | Usp19 | uguagcaauggucugUCACAAu | |||||| | auuuccuguauuuaaAGUGUUa | 2 | 8 | 233 | 254 | [rn4:16_random:1241569-1241590:+] | 0.5828 | 120 | 6 | -9.36 | -0.2062 |
MIMAT0000883 | rno-miR-212 | 361190 | Usp19 | accggcACUGACCUCUG-ACAAu | ||:: |||||| |||| | uguaucUGGUGGGAGACUUGUUg | 2 | 17 | 102 | 124 | [rn4:16_random:1241438-1241460:+] | 0.5828 | 128 | 0 | -20.40 | -0.1167 |
MIMAT0000883 | rno-miR-212 | 361190 | Usp19 | accggcACUGACCUCUG-ACAAu | ||:: |||||| |||| | uguaucUGGUGGGAGACUUGUUg | 2 | 17 | 102 | 124 | [rn4:16_random:1241438-1241460:+] | 0.5828 | 128 | 0 | -20.40 | -0.1757 |
MIMAT0000885 | rno-miR-214 | 361190 | Usp19 | gacGGACAGACACGGACGACa | ::|| ||| |||||| | cauUUUGGAAGUGACUGCUGc | 2 | 19 | 837 | 857 | [rn4:16_random:1242173-1242193:+] | 0.7190 | 126 | 6 | -16.48 | -0.2409 |
MIMAT0000892 | rno-miR-223 | 361190 | Usp19 | ccccAUAAACUGUUUGACUGu | || | |:|||| ||| | uaaaUAAUAAAUAAACCGACu | 2 | 18 | 879 | 899 | [rn4:16_random:1242215-1242235:+] | 0.6442 | 125 | 0 | -6.93 | -0.1180 |
MIMAT0003119 | rno-miR-224 | 361190 | Usp19 | auUUGCCUUGG-UG-AUCACUGAac | || |||| || |||||||| | auAAAUAAACCGACUUAGUGACUga | 3 | 22 | 885 | 909 | [rn4:16_random:1242221-1242245:+] | 0.6442 | 143 | 0 | -20.56 | -0.1234 |
MIMAT0003119 | rno-miR-224 | 361190 | Usp19 | auuugccuuggugaUCACUGAac | ||||||| | uuuugcauuuuggaAGUGACUgc | 3 | 10 | 832 | 854 | [rn4:16_random:1242168-1242190:+] | 0.7190 | 125 | 0 | -12.90 | -0.1415 |
MIMAT0003179 | rno-miR-542-3p | 361190 | Usp19 | aaagucAAUAGUUAGACAGUGu | || |: |||||||| | gacauuUUUUUCUUCUGUCACu | 2 | 17 | 598 | 619 | [rn4:16_random:1241934-1241955:+] | 0.6049 | 152 | 7 | -13.71 | -0.8792 |
MIMAT0003203 | rno-miR-485 | 361190 | Usp19 | cuUAAGUAGUGCCG--GUCGGAGa | | |::|:: | | ||||||| | agACUUGUUGGGACUACAGCCUCu | 2 | 21 | 115 | 138 | [rn4:16_random:1241451-1241474:+] | 0.5828 | 147 | 7 | -17.85 | -0.2922 |
MIMAT0003203 | rno-miR-485 | 361190 | Usp19 | cuUAAGUAGUGCCG--GUCGGAGa | | |::|:: | | ||||||| | agACUUGUUGGGACUACAGCCUCu | 2 | 21 | 115 | 138 | [rn4:16_random:1241451-1241474:+] | 0.5828 | 147 | 7 | -17.85 | -0.4116 |
MIMAT0003208 | rno-miR-374 | 361190 | Usp19 | gugaaucguccaacaUAAUAUa | |||||| | uucuuucugaccugcAUUAUAa | 2 | 8 | 782 | 803 | [rn4:16_random:1242118-1242139:+] | 0.7190 | 120 | 6 | -3.81 | -0.2679 |
MIMAT0003213 | rno-miR-503 | 361190 | Usp19 | gacgucaugacaagGGCGACGAu | |||||||| | ucucugucuaaacgCCGCUGCUg | 2 | 10 | 285 | 307 | [rn4:16_random:1241621-1241643:+] | 0.5828 | 145 | 7 | -20.54 | -0.1409 |
MIMAT0003213 | rno-miR-503 | 361190 | Usp19 | gacgucaugaCAAGGGCGACGAu | || |:|||||| | cauuuuggaaGUGACUGCUGCUg | 2 | 14 | 837 | 859 | [rn4:16_random:1242173-1242195:+] | 0.7190 | 133 | 6 | -19.65 | -0.2951 |
MIMAT0003383 | rno-miR-497 | 361190 | Usp19 | auguuuggugUCAC--ACGACGAc | |||| ||||||| | gcauuuuggaAGUGACUGCUGCUg | 2 | 13 | 836 | 859 | [rn4:16_random:1242172-1242195:+] | 0.7190 | 147 | 7 | -19.45 | -1.1016 |
MIMAT0003383 | rno-miR-497 | 361190 | Usp19 | auguuuGGUGUCACAC-GACGAc | |::||| ||| ||||| | gcucccCUGCAG-GUGCCUGCUg | 2 | 17 | 1 | 22 | [rn4:16_random:1241337-1241358:+] | 0.5828 | 122 | 0 | -21.90 | -0.1241 |
MIMAT0003383 | rno-miR-497 | 361190 | Usp19 | auguuuGGUGUCACAC-GACGAc | |::||| ||| ||||| | gcucccCUGCAG-GUGCCUGCUg | 2 | 17 | 1 | 22 | [rn4:16_random:1241337-1241358:+] | 0.5828 | 122 | 0 | -21.90 | -0.1314 |
MIMAT0005309 | rno-miR-384-5p | 361190 | Usp19 | ugUAACGGAUCCUUAACAAAUgu | | || || | : |||||| | gaAGUGACU-GCUGCUGUUUAaa | 3 | 22 | 844 | 865 | [rn4:16_random:1242180-1242201:+] | 0.7190 | 127 | 0 | -5.80 | -0.2948 |