DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004711 rno-miR-21* 50522 Ubc cugucggguagcugaCGACAAc |||||| uucccuaucuuuuaaGCUGUUa 2 8 19 40 [rn4:12:32337884-32337905:+] 0.6424 120 6 -13.82 -0.3598 MIMAT0004711 rno-miR-21* 50522 Ubc cugucggguagcugaCGACAAc |||||| uucccuaucuuuuaaGCUGUUa 2 8 19 40 [rn4:12:32337884-32337905:+] 0.6424 120 6 -13.82 -0.3324 MIMAT0004732 rno-miR-135a* 50522 Ubc aaagUACCGAA--GGUAGGGAUGu :|| ||| :: ||||||: ggagGUGUCUUAGUUUUCCCUAUc 2 19 4 27 [rn4:12:32337869-32337892:+] 0.6424 133 0 -13.25 -0.1175 MIMAT0004739 rno-miR-204* 50522 Ubc uugCAGGGAAACGGAAGGGUcg ||:| |||| |||||| aaaGUUC--UUGCAUUCCCAaa 3 20 64 83 [rn4:12:32337929-32337948:+] 0.6374 140 0 -15.08 -0.3194 MIMAT0000902 rno-miR-300-3p 50522 Ubc cuucucucgaaCGGGAACGUAu |::||||||| cuuugaauaaaGUUCUUGCAUu 2 12 56 77 [rn4:12:32337921-32337942:+] 0.6374 147 7 -13.74 -1.1641 MIMAT0000902 rno-miR-300-3p 50522 Ubc cuucucucgaaCGGGAACGUAu |::||||||| cuuugaauaaaGUUCUUGCAUu 2 12 56 77 [rn4:12:32337921-32337942:+] 0.6374 147 7 -13.74 -0.9571 MIMAT0005330 rno-miR-674-3p 50522 Ubc aacaagacucuacccUCGACAc |||||| uuucccuaucuuuuaAGCUGUu 2 8 18 39 [rn4:12:32337883-32337904:+] 0.6424 120 6 -6.88 -0.2491 MIMAT0005330 rno-miR-674-3p 50522 Ubc aacaagacucuacccUCGACAc |||||| uuucccuaucuuuuaAGCUGUu 2 8 18 39 [rn4:12:32337883-32337904:+] 0.6424 120 6 -6.88 -0.1872 MIMAT0012825 rno-miR-105 50522 Ubc uggUGUCUGUAGACUCGUGAAc ||| :: || |||||| uuaACAAGUUUCAUUGCACUUu 2 20 38 59 [rn4:12:32337903-32337924:+] 0.6374 123 6 -9.38 -0.1244 MIMAT0012825 rno-miR-105 50522 Ubc uggUGUCUGUAGACUCGUGAAc ||| :: || |||||| uuaACAAGUUUCAUUGCACUUu 2 20 38 59 [rn4:12:32337903-32337924:+] 0.6374 123 6 -9.38 -0.1031 MIMAT0012852 rno-miR-667 50522 Ubc gaacccgacccaCCGUCCACAGu || ||||||| ----------ugGGGAGGUGUCu 2 12 1 13 [rn4:12:32337866-32337878:+] 0.6474 147 7 -17.62 -1.0715 MIMAT0012852 rno-miR-667 50522 Ubc gaacccgacccaCCGUCCACAGu || ||||||| ----------ugGGGAGGUGUCu 2 12 1 13 [rn4:12:32337866-32337878:+] 0.6474 147 7 -17.62 -0.4849 MIMAT0000552 rno-miR-301a 50522 Ubc cgaAACUGUU-AUGAUAACGUGAc || |||| | : |||||||| cugUUAACAAGUUUCAUUGCACUu 2 21 35 58 [rn4:12:32337900-32337923:+] 0.6374 163 7 -12.08 -1.1219 MIMAT0000552 rno-miR-301a 50522 Ubc cgaAACUGUU-AUGAUAACGUGAc || |||| | : |||||||| cugUUAACAAGUUUCAUUGCACUu 2 21 35 58 [rn4:12:32337900-32337923:+] 0.6374 163 7 -12.08 -1.0874 MIMAT0000602 rno-miR-20a 50522 Ubc gaUGGACGUGAUAUUCGUGAAAu || |: : || ||||||| uaACAAGUUUCAU-UGCACUUUg 2 22 39 60 [rn4:12:32337904-32337925:+] 0.6374 143 7 -11.15 -1.1834 MIMAT0000602 rno-miR-20a 50522 Ubc gaUGGACGUGAUAUUCGUGAAAu || |: : || ||||||| uaACAAGUUUCAU-UGCACUUUg 2 22 39 60 [rn4:12:32337904-32337925:+] 0.6374 143 7 -11.15 -1.1347 MIMAT0000786 rno-miR-17-5p 50522 Ubc gauggacgugacauuCGUGAAAc ||||||| uuaacaaguuucauuGCACUUUg 2 9 38 60 [rn4:12:32337903-32337925:+] 0.6374 140 7 -13.40 -1.1834 MIMAT0000786 rno-miR-17-5p 50522 Ubc gauggacgugacauuCGUGAAAc ||||||| uuaacaaguuucauuGCACUUUg 2 9 38 60 [rn4:12:32337903-32337925:+] 0.6374 140 7 -13.40 -1.1347 MIMAT0000790 rno-miR-21 50522 Ubc aguuguagucagacuAUUCGAu |||||| guuuucccuaucuuuUAAGCUg 2 8 16 37 [rn4:12:32337881-32337902:+] 0.6424 120 6 -10.41 -0.2305 MIMAT0000817 rno-miR-93 50522 Ubc gauggacgugcuUGUCGUGAAAc |: ||||||| uuaacaaguuucAUUGCACUUUg 2 12 38 60 [rn4:12:32337903-32337925:+] 0.6374 143 7 -13.26 -1.1834 MIMAT0000817 rno-miR-93 50522 Ubc gauggacgugcuUGUCGUGAAAc |: ||||||| uuaacaaguuucAUUGCACUUUg 2 12 38 60 [rn4:12:32337903-32337925:+] 0.6374 143 7 -13.26 -1.1347 MIMAT0000825 rno-miR-106b 50522 Ubc uagacgUGACAGU--CGUGAAAu | | ||| ||||||| uuaacaAGUUUCAUUGCACUUUg 2 16 38 60 [rn4:12:32337903-32337925:+] 0.6374 146 7 -11.92 -1.1834 MIMAT0000825 rno-miR-106b 50522 Ubc uagacgUGACAGU--CGUGAAAu | | ||| ||||||| uuaacaAGUUUCAUUGCACUUUg 2 16 38 60 [rn4:12:32337903-32337925:+] 0.6374 146 7 -11.92 -1.1347 MIMAT0000836 rno-miR-130a 50522 Ubc uacgggaAAAUUGUAACGUGAc ||| ||||||||| uaacaagUUU--CAUUGCACUu 2 16 39 58 [rn4:12:32337904-32337923:+] 0.6374 152 7 -12.48 -1.1219 MIMAT0000836 rno-miR-130a 50522 Ubc uacgggaAAAUUGUAACGUGAc ||| ||||||||| uaacaagUUU--CAUUGCACUu 2 16 39 58 [rn4:12:32337904-32337923:+] 0.6374 152 7 -12.48 -1.0874 MIMAT0000837 rno-miR-130b 50522 Ubc uacgggaaaguAGUAACGUGAc |||||||||| guuaacaaguuUCAUUGCACUu 2 12 37 58 [rn4:12:32337902-32337923:+] 0.6374 155 7 -13.62 -1.1174 MIMAT0000837 rno-miR-130b 50522 Ubc uacgggaaaguAGUAACGUGAc |||||||||| guuaacaaguuUCAUUGCACUu 2 12 37 58 [rn4:12:32337902-32337923:+] 0.6374 155 7 -13.62 -1.0825 MIMAT0000852 rno-miR-146a 50522 Ubc uuGGGUACCUUAAGUCAAGAGu | | | |||| ||||||: ugCACUUUGAAUAAAGUUCUUg 2 21 52 73 [rn4:12:32337917-32337938:+] 0.6374 144 0 -11.69 -0.1599 MIMAT0000852 rno-miR-146a 50522 Ubc uuGGGUACCUUAAGUCAAGAGu | | | |||| ||||||: ugCACUUUGAAUAAAGUUCUUg 2 21 52 73 [rn4:12:32337917-32337938:+] 0.6374 144 0 -11.69 -0.1144 MIMAT0000854 rno-miR-152 50522 Ubc ggUUCAAGACAGU-ACGUGAcu ||||| ||| |||||| acAAGUU---UCAUUGCACUuu 3 20 41 59 [rn4:12:32337906-32337924:+] 0.6374 134 0 -15.68 -0.1008 MIMAT0000869 rno-miR-194 50522 Ubc agguguaccucaaCGACAAUgu ||||||| cccuaucuuuuaaGCUGUUAac 3 10 21 42 [rn4:12:32337886-32337907:+] 0.6424 125 0 -11.23 -0.1183 MIMAT0000869 rno-miR-194 50522 Ubc agguguaccucaaCGACAAUgu ||||||| cccuaucuuuuaaGCUGUUAac 3 10 21 42 [rn4:12:32337886-32337907:+] 0.6424 125 0 -11.23 -0.1144 MIMAT0000879 rno-miR-206 50522 Ubc ggUGUGUGAAGGAAUGUAAGGu |:| | || |||:|||||| gaAUAAAGUU-CUUGCAUUCCc 2 21 60 80 [rn4:12:32337925-32337945:+] 0.6374 150 6 -17.17 -0.3324 MIMAT0000879 rno-miR-206 50522 Ubc ggUGUGUGAAGGAAUGUAAGGu |:| | || |||:|||||| gaAUAAAGUU-CUUGCAUUCC- 2 21 60 79 [rn4:12:32337925-32337944:+] 0.6374 150 6 -16.77 -0.2325 MIMAT0000880 rno-miR-208 50522 Ubc uguucgaaaaacgaGCAGAAUa :|||||| ------uggggaggUGUCUUAg 2 9 1 16 [rn4:12:32337866-32337881:+] 0.6474 124 6 -8.62 -0.1144 MIMAT0000895 rno-miR-291a-3p 50522 Ubc ccgugUGUUUCACCU-UCGUGAAa ||||: | | |||||| uguuaACAAGUUUCAUUGCACUUu 2 19 36 59 [rn4:12:32337901-32337924:+] 0.6374 121 6 -11.43 -0.1232 MIMAT0000895 rno-miR-291a-3p 50522 Ubc ccgugUGUUUCACCU-UCGUGAAa ||||: | | |||||| uguuaACAAGUUUCAUUGCACUUu 2 19 36 59 [rn4:12:32337901-32337924:+] 0.6374 121 6 -11.43 -0.1020 MIMAT0003125 rno-miR-1 50522 Ubc uaUGUGUGAAGAAAUGUAAGGu |:| | ||| ||:|||||| gaAUAAAGUUC-UUGCAUUCCc 2 21 60 80 [rn4:12:32337925-32337945:+] 0.6374 150 6 -13.92 -0.3324 MIMAT0003125 rno-miR-1 50522 Ubc uaUGUGUGAAGAAAUGUAAGGu |:| | ||| ||:|||||| gaAUAAAGUUC-UUGCAUUCC- 2 21 60 79 [rn4:12:32337925-32337944:+] 0.6374 150 6 -13.52 -0.2325 MIMAT0003211 rno-miR-20b-5p 50522 Ubc uggacgugauacuCGUGAAAc ||||||| aacaaguuucauuGCACUUUg 2 9 40 60 [rn4:12:32337905-32337925:+] 0.6374 140 7 -13.03 -1.1834 MIMAT0003211 rno-miR-20b-5p 50522 Ubc uggacgugauacuCGUGAAAc ||||||| aacaaguuucauuGCACUUUg 2 9 40 60 [rn4:12:32337905-32337925:+] 0.6374 140 7 -13.03 -1.1347 MIMAT0003381 rno-miR-499 50522 Ubc uuuguagugacguuCAGAAUu |||||| -----uggggagguGUCUUAg 2 8 1 16 [rn4:12:32337866-32337881:+] 0.6474 120 6 -7.19 -0.1144 MIMAT0005300 rno-miR-182 50522 Ubc gccacacUCAAGAUGGUAACGGUUu |||||| |||| |||| ugaauaaAGUUCUUGCAUUCCCAAa 2 19 59 83 [rn4:12:32337924-32337948:+] 0.6374 142 0 -16.75 -0.1135 MIMAT0005304 rno-miR-301b 50522 Ubc cgaAACUGUU-AUGGUAACGUGAc || |||| | :||||||||| cugUUAACAAGUUUCAUUGCACUu 2 21 35 58 [rn4:12:32337900-32337923:+] 0.6374 171 7 -18.00 -1.1219 MIMAT0005304 rno-miR-301b 50522 Ubc cgaAACUGUU-AUGGUAACGUGAc || |||| | :||||||||| cugUUAACAAGUUUCAUUGCACUu 2 21 35 58 [rn4:12:32337900-32337923:+] 0.6374 171 7 -18.00 -1.0874 MIMAT0005595 rno-miR-146b 50522 Ubc uguCG-GAUACCUUAAGUCAAGAGu || || | |||| ||||||: auuGCACU-UUGAAUAAAGUUCUUg 2 22 50 73 [rn4:12:32337915-32337938:+] 0.6374 142 0 -12.95 -0.1599 MIMAT0005595 rno-miR-146b 50522 Ubc uguCG-GAUACCUUAAGUCAAGAGu || || | |||| ||||||: auuGCACU-UUGAAUAAAGUUCUUg 2 22 50 73 [rn4:12:32337915-32337938:+] 0.6374 142 0 -12.95 -0.1144

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G056979 Ubc Rattus norvegicus 50522 11872750 -67 -28 R33828; RAT$UBC_01; Binding factors: Sp1 , Sp1

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubc RAID00145626 rno-miR-1-3p miRNA MIMAT0003125 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID00608016 rno-miR-301a-3p miRNA MIMAT0000552 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID00615958 rno-miR-291b miRNA MIMAT0017822 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID00868948 rno-miR-146b-5p miRNA MIMAT0005595 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01026028 rno-miR-146a-5p miRNA MIMAT0000852 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01052990 rno-miR-301b-3p miRNA MIMAT0005304 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01054776 rno-miR-17-5p miRNA MIMAT0000786 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01078969 rno-miR-130a-3p miRNA MIMAT0000836 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01081865 rno-miR-20a-5p miRNA MIMAT0000602 Ubc mRNA 50522 Prediction 0.2202 Ubc RAID01142375 rno-miR-130b-3p miRNA MIMAT0000837 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01275137 rno-miR-20b-5p miRNA MIMAT0003211 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01330238 rno-miR-93-5p miRNA MIMAT0000817 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01495206 rno-miR-152-3p miRNA MIMAT0000854 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01578000 rno-miR-182 miRNA MIMAT0005300 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01580448 rno-miR-194-5p miRNA MIMAT0000869 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01718752 rno-miR-499-5p miRNA MIMAT0003381 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID01843328 rno-miR-106b-5p miRNA MIMAT0000825 Ubc mRNA 50522 Prediction 0.2202 Ubc RAID02285484 rno-miR-208a-3p miRNA MIMAT0000880 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID02561778 rno-miR-206-3p miRNA MIMAT0000879 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID02866847 rno-miR-21-5p miRNA MIMAT0000790 Ubc mRNA 50522 Prediction 0.1828 Ubc RAID03494698 rno-miR-291a-3p miRNA MIMAT0000895 Ubc mRNA 50522 Prediction 0.2202