DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 116725 Ube2n acAACGUCGCGAAGU-ACAAa |||: :| |||| |||| ucUUGUCCUGAUUCACUGUUg 2 19 155 175 [rn4:7:32749467-32749487:+] 0.6416 122 0 -7.48 -0.9778 MIMAT0000568 rno-miR-330* 116725 Ube2n agagaCGUCC-GGGACACGAAACg ||||| |:|| ||||||| gagaaGCAGGACUCUCUGCUUUGa 2 19 226 249 [rn4:7:32749538-32749561:+] 0.6416 169 7 -24.87 -0.4912 MIMAT0000570 rno-miR-331 116725 Ube2n aaGAUCCUAUCCG-GGUCCCCg | :|| ||| : ||||||| guCAGGGUUAGCUGCCAGGGGc 2 20 301 322 [rn4:7:32749613-32749634:+] 0.6416 154 7 -27.98 -0.3709 MIMAT0000599 rno-miR-349 116725 Ube2n ucucCAAUUC-UG-UCGUC-CCGAc || ||| |: ||||| |||| uguuGUAAAGCAUGAGCAGAGGCUa 2 19 171 195 [rn4:7:32749483-32749507:+] 0.6416 124 0 -15.45 -0.5665 MIMAT0000603 rno-miR-20a* 116725 Ube2n acAUUCACG--AGCA--UUACGUCa ||| ||| | || ||||||| ucUAAUUGCAGUGGUUAAAUGCAGc 2 20 398 422 [rn4:7:32749710-32749734:+] 0.6728 153 7 -13.66 -0.8692 MIMAT0000607 rno-miR-7a* 116725 Ube2n uacCGUCUGACACUAAACAAca |:| | | | |||||| uuaGUAAAAUAUUUUUUGUUau 3 20 665 686 [rn4:7:32749977-32749998:+] 0.7040 131 0 -2.93 -0.1836 MIMAT0000614 rno-miR-151* 116725 Ube2n ggAGUUCCUCGGAGUCAGAuc |:|| | | | |||||| auUUAAUG-GACACAGUCUua 3 20 69 88 [rn4:7:32749381-32749400:+] 0.6416 133 0 -15.30 -0.1595 MIMAT0004714 rno-miR-26b* 116725 Ube2n cuCGGUUCAUUAC--CUCUU-GUCc ||::|| :||| ||||| ||| uuGCUGAGAGAUGCUGAGAAGCAGg 2 21 211 235 [rn4:7:32749523-32749547:+] 0.6416 131 0 -20.37 -0.1847 MIMAT0000902 rno-miR-300-3p 116725 Ube2n cuucucucGAACGGGAACGUAu :|| : :|||||| ucuuccuuUUUUUGUUUGCAUu 2 15 50 71 [rn4:7:32749362-32749383:+] 0.6416 130 6 -8.67 -0.1036 MIMAT0003206 rno-miR-369-5p 116725 Ube2n cgcuuauauugugcCAGCUAGa ||||||| --------------GUCGAUCa 2 9 1 8 [rn4:7:32749313-32749320:+] 0.6416 140 7 -10.19 -0.9762 MIMAT0005279 rno-miR-466c 116725 Ube2n guacAUGUACGUGUGUAGUGu || || | ||||||| acauUAAAU--AAACAUCACa 2 18 511 529 [rn4:7:32749823-32749841:+] 0.7040 146 7 -12.93 -1.2830 MIMAT0005301 rno-miR-188 116725 Ube2n ggGAGGUGGUA-CGUUCCCUAc |||| |: | :||||||| gcCUCCCCUCUCUUAAGGGAUc 2 20 378 399 [rn4:7:32749690-32749711:+] 0.6416 154 7 -24.21 -0.8907 MIMAT0012824 rno-miR-513 116725 Ube2n uacUUUCUGUGGAAGAACACUu :|||| | ||||||| gacGAAGA-AAAAGCUUGUGAc 2 20 601 621 [rn4:7:32749913-32749933:+] 0.7040 145 7 -12.19 -0.7469 MIMAT0000798 rno-miR-27b 116725 Ube2n cgUCUUGAAUCGGUGACACUu || || || |||||||| uaAGUAC-AAGGCACUGUGAa 2 20 270 289 [rn4:7:32749582-32749601:+] 0.6416 157 7 -18.30 -0.5922 MIMAT0000799 rno-miR-27a 116725 Ube2n cgccuugaaUCGGUGACACUu || |||||||| cuaaguacaAGGCACUGUGAa 2 13 269 289 [rn4:7:32749581-32749601:+] 0.6416 152 7 -17.48 -0.5922 MIMAT0000804 rno-miR-30c 116725 Ube2n cgacucucacauccuACAAAUGu |||||:| acuucuuccuuuuuuUGUUUGCa 2 9 47 69 [rn4:7:32749359-32749381:+] 0.6416 124 0 -8.09 -0.1250 MIMAT0000805 rno-miR-30e 116725 Ube2n gaaggucaguuccuACAAAUGu |||||:| cuucuuccuuuuuuUGUUUGCa 2 9 48 69 [rn4:7:32749360-32749381:+] 0.6416 124 0 -14.63 -0.1275 MIMAT0000806 rno-miR-30b-5p 116725 Ube2n ucgacucacauccuACAAAUGu |||||:| cuucuuccuuuuuuUGUUUGCa 2 9 48 69 [rn4:7:32749360-32749381:+] 0.6416 124 0 -7.35 -0.1250 MIMAT0000807 rno-miR-30d 116725 Ube2n gaaggucagccccuACAAAUGu |||||:| cuucuuccuuuuuuUGUUUGCa 2 9 48 69 [rn4:7:32749360-32749381:+] 0.6416 124 0 -14.63 -0.1275 MIMAT0000808 rno-miR-30a 116725 Ube2n gaaggucagcuccuACAAAUGu |||||:| cuucuuccuuuuuuUGUUUGCa 2 9 48 69 [rn4:7:32749360-32749381:+] 0.6416 124 0 -14.63 -0.1275 MIMAT0000834 rno-miR-128 116725 Ube2n uuucucuggccaaGUGACACu ||||||| ucuaaguacaaggCACUGUGa 2 9 268 288 [rn4:7:32749580-32749600:+] 0.6416 140 7 -16.18 -0.9300 MIMAT0000842 rno-miR-136 116725 Ube2n agguaguAGUUUUGUUUACCUca |:: | : |||||| uuuuuguUUGCAUUUAAUGGAca 3 17 58 80 [rn4:7:32749370-32749392:+] 0.6416 124 0 -6.59 -0.1135 MIMAT0000863 rno-miR-186 116725 Ube2n ucggguuuUCCUCU--UAAGAAAc || | | |||:||| uauguuuuAGUAAAAUAUUUUUUg 2 15 659 682 [rn4:7:32749971-32749994:+] 0.7040 125 0 -7.32 -0.2724 MIMAT0000878 rno-miR-205 116725 Ube2n guCUGAGGCCACCUUACUUCCu |:| |: || ||||||||| aaGGCACU-GU-GAAUGAAGGu 2 21 277 296 [rn4:7:32749589-32749608:+] 0.6416 156 7 -21.13 -0.3153 MIMAT0000880 rno-miR-208 116725 Ube2n uguucgaaaaacgagCAGAAUa |||||| cauuuaauggacacaGUCUUAg 2 8 68 89 [rn4:7:32749380-32749401:+] 0.6416 120 6 -7.91 -0.1074 MIMAT0000886 rno-miR-216a 116725 Ube2n agugucaaCGGUCGAC-UCUAAu |:||| || ||||| acuuugccGUCAGGUGUAGAUUc 2 15 551 573 [rn4:7:32749863-32749885:+] 0.7040 122 0 -13.24 -0.3683 MIMAT0003114 rno-miR-383 116725 Ube2n ucggugucAGUGGAAGACUAGa | ||: ||||||| gacaagcuUGACUGUCUGAUCc 2 15 480 501 [rn4:7:32749792-32749813:+] 0.7040 150 7 -14.26 -0.7906 MIMAT0003119 rno-miR-224 116725 Ube2n auuugccUUGGUG-AUCACUGAAc ||: || | ||||||| ccucacuAAUAACAUUGUGACUUu 2 17 532 555 [rn4:7:32749844-32749867:+] 0.7040 151 7 -12.61 -0.8343 MIMAT0003193 rno-miR-494 116725 Ube2n uccaaagggcacAUACAAAGu |||||||: uucuguaaaucuUAUGUUUUa 2 10 647 667 [rn4:7:32749959-32749979:+] 0.7040 129 0 -10.34 -0.4457 MIMAT0003381 rno-miR-499 116725 Ube2n uuUGU-AGUGAC--GU-UCAGAAUu :|| |:| || || ||||||| uuGCAUUUAAUGGACACAGUCUUAg 2 20 65 89 [rn4:7:32749377-32749401:+] 0.6416 148 7 -12.56 -0.8222 MIMAT0005309 rno-miR-384-5p 116725 Ube2n uguaacggauccuuAACAAAUGu ||||||:| acuucuuccuuuuuUUGUUUGCa 2 10 47 69 [rn4:7:32749359-32749381:+] 0.6416 129 0 -13.37 -0.1238 MIMAT0005320 rno-miR-495 116725 Ube2n uucuUCACGUGGU-ACAAACAAa ||| | :| | |||||| uuuuAGUAAAAUAUUUUUUGUUa 2 19 663 685 [rn4:7:32749975-32749997:+] 0.7040 121 6 -4.66 -0.7515

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G045860 Ube2n Rattus norvegicus 116725

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ube2n RAID00089391 rno-miR-186-5p miRNA MIMAT0000863 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID00162611 rno-miR-494-3p miRNA MIMAT0003193 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID00234264 rno-miR-384-5p miRNA MIMAT0005309 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID01139188 rno-miR-205 miRNA MIMAT0000878 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID01271676 rno-miR-30d-5p miRNA MIMAT0000807 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID01453471 rno-miR-30e-5p miRNA MIMAT0000805 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID01565286 rno-miR-136-5p miRNA MIMAT0000842 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID01581082 rno-miR-495 miRNA MIMAT0005320 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID01724850 rno-miR-449a-3p miRNA MIMAT0017181 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID01769054 rno-miR-33-3p miRNA MIMAT0017104 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02108695 rno-miR-383-5p miRNA MIMAT0003114 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02128396 rno-miR-224-5p miRNA MIMAT0003119 Ube2n mRNA 116725 Prediction 0.2202 Ube2n RAID02166924 rno-miR-27b-3p miRNA MIMAT0000798 Ube2n mRNA 116725 Prediction 0.2202 Ube2n RAID02491431 rno-let-7a-2-3p miRNA MIMAT0017086 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02619719 rno-miR-30a-5p miRNA MIMAT0000808 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02680870 rno-miR-3561-5p miRNA MIMAT0017830 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02687346 rno-miR-15a-3p miRNA MIMAT0035729 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02736122 rno-miR-128-3p miRNA MIMAT0000834 Ube2n mRNA 116725 Prediction 0.2202 Ube2n RAID02777160 rno-miR-30b-5p miRNA MIMAT0000806 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02836104 rno-miR-216a-5p miRNA MIMAT0000886 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02931850 rno-miR-30c-5p miRNA MIMAT0000804 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID02958924 rno-let-7c-1-3p miRNA MIMAT0017087 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID03493779 rno-miR-499-5p miRNA MIMAT0003381 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID03858965 rno-miR-208a-3p miRNA MIMAT0000880 Ube2n mRNA 116725 Prediction 0.1828 Ube2n RAID03999003 rno-miR-27a-3p miRNA MIMAT0000799 Ube2n mRNA 116725 Prediction 0.2202