DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 309758 Herc4 ggucgucguggacccCGUCACc |||||| uuucuugugaauucaGCAGUGa 2 8 51 72 [rn4:20:25665428-25665449:+] 0.6946 120 6 -14.27 -0.1149 MIMAT0004646 rno-miR-338* 309758 Herc4 gugAGUCGUG-GUCCUAUAACAa | | ||: || :|||||| ucaUAAACAUACA-AGUAUUGUg 2 20 172 193 [rn4:20:25665549-25665570:+] 0.6946 128 6 -7.59 -0.2680 MIMAT0000604 rno-miR-350 309758 Herc4 cacuuucacauacccgaAACACUu |||||| caaacuacucguuuuucUUGUGAa 2 8 38 61 [rn4:20:25665415-25665438:+] 0.6946 120 6 -7.06 -0.3065 MIMAT0000604 rno-miR-350 309758 Herc4 cacuuucacauacccgaAACACUu |||||| ucauaaacauacaaguaUUGUGAa 2 8 172 195 [rn4:20:25665549-25665572:+] 0.6946 120 6 -7.82 -0.4116 MIMAT0000610 rno-miR-352 309758 Herc4 augaUACGUUGGAUGAUGAGa | ||| | ||||||| gcaaAGGCAUCAAACUACUCg 2 18 28 48 [rn4:20:25665405-25665425:+] 0.6946 153 7 -14.51 -1.1316 MIMAT0000610 rno-miR-352 309758 Herc4 augauacguuggaUGAUGAga |||||| cuaaaaauuguucACUACUgu 3 9 95 115 [rn4:20:25665472-25665492:+] 0.6946 120 0 -8.84 -0.1205 MIMAT0004708 rno-miR-9* 309758 Herc4 ugaaagccaauagaUCGAAAUa ||:|||| ugugaauacauuaaAGUUUUAc 2 9 190 211 [rn4:20:25665567-25665588:+] 0.6946 124 0 -3.92 -0.3274 MIMAT0004731 rno-miR-125b* 309758 Herc4 uccaGGGUUCUC-GGACUGAAca ||: :||| :||||||| ----CCUUGGAGUUCUGACUUuc 3 19 1 19 [rn4:20:25665378-25665396:+] 0.6946 141 0 -17.56 -0.1164 MIMAT0004733 rno-miR-136* 309758 Herc4 ucUGAGUAA--ACUCUGCUACUAc ::||| | || :|||||| uuGUUCACUACUGUACUGAUGAUg 2 21 102 125 [rn4:20:25665479-25665502:+] 0.6946 131 6 -14.38 -0.2072 MIMAT0004738 rno-miR-199a-3p 309758 Herc4 auuggUUACACGUCUGAUGACa ||| ||: ||||||| cuaaaAAU-UGUUCACUACUGu 2 18 95 115 [rn4:20:25665472-25665492:+] 0.6946 151 7 -13.38 -1.1431 MIMAT0004738 rno-miR-199a-3p 309758 Herc4 auugguuacacGUCUGAUGAca || |||||| ugcaaaggcauCAAACUACUcg 3 12 27 48 [rn4:20:25665404-25665425:+] 0.6946 127 0 -10.63 -0.1646 MIMAT0004740 rno-miR-218* 309758 Herc4 gcgccacGAACUGUCUUGGUAc || |||||||||| uuaaaaaCUGUACAGAACCAUg 2 16 137 158 [rn4:20:25665514-25665535:+] 0.6946 159 7 -21.47 -1.2490 MIMAT0000899 rno-miR-297 309758 Herc4 guacGUAUGUACGUGUGUAUGUa ||| | :| ||||||| guacCAUCCUCAUAAACAUACAa 2 20 163 185 [rn4:20:25665540-25665562:+] 0.6946 151 7 -10.89 -1.3228 MIMAT0003162 rno-miR-1* 309758 Herc4 cccAUGUAUUUCUUCAU-ACACg || | | | ||||| |||| ucaUAAACAUACAAGUAUUGUGa 2 20 172 194 [rn4:20:25665549-25665571:+] 0.6946 127 0 -12.32 -1.2654 MIMAT0003174 rno-miR-540 309758 Herc4 gguccuAGCUGGAGACUGGa | || :||||||: ---ccuUGGAGUUCUGACUu 2 15 1 17 [rn4:20:25665378-25665394:+] 0.6946 134 0 -16.01 -0.2446 MIMAT0005322 rno-miR-532-5p 309758 Herc4 uguCAGGAUGUGAGUUCCGUAc ||:: :::| ||||||| ucuGUUUAGUGC-AAAGGCAUc 2 20 18 38 [rn4:20:25665395-25665415:+] 0.6946 145 7 -10.92 -1.0256 MIMAT0005327 rno-miR-672 309758 Herc4 aguGUGUGUCAUGUGGUUGGAGu ||:: | |::|||| |||| aacCAUGAAUUGUACCAUCCUCa 2 21 152 174 [rn4:20:25665529-25665551:+] 0.6946 136 0 -19.21 -0.1633 MIMAT0012824 rno-miR-513 309758 Herc4 uacuuucuguGGAAGAACACUu ::||||||||| aacuacucguUUUUCUUGUGAa 2 13 40 61 [rn4:20:25665417-25665438:+] 0.6946 152 7 -15.69 -1.3004 MIMAT0012824 rno-miR-513 309758 Herc4 uacUUUCUGUG-GAAGAACACUu ||| |:|| | |||||| cauAAACAUACAAGUAUUGUGAa 2 20 173 195 [rn4:20:25665550-25665572:+] 0.6946 126 6 -11.04 -0.4023 MIMAT0012827 rno-miR-1224 309758 Herc4 gagguggaggggucAGGAGUg |||||| caugaauuguaccaUCCUCAu 2 8 155 175 [rn4:20:25665532-25665552:+] 0.6946 120 6 -14.94 -0.1848 MIMAT0012829 rno-miR-511 309758 Herc4 acuCACGUCUCGUUUUCCGUa || :|| || ||||||| ucuGUUUAGUGC-AAAGGCAu 2 19 18 37 [rn4:20:25665395-25665414:+] 0.6946 156 7 -16.35 -1.1346 MIMAT0012833 rno-miR-582 309758 Herc4 ucauugaccaacuugUUGACAu |||||| aagccaaaaauuaaaAACUGUa 2 8 127 148 [rn4:20:25665504-25665525:+] 0.6946 120 6 -7.60 -0.3388 MIMAT0012836 rno-miR-628 309758 Herc4 ggAGAGCAUUUAUACAGUCGUa |||:||:|| |||||| uuUCUUGUGAA---UUCAGCAg 2 21 51 69 [rn4:20:25665428-25665446:+] 0.6946 128 6 -19.76 -0.1278 MIMAT0012840 rno-miR-802 309758 Herc4 uuccuacuuagaaaCAAUGAcu |||||| auucagcagugagaGUUACUuc 3 9 61 82 [rn4:20:25665438-25665459:+] 0.6946 120 0 -7.05 -0.1006 MIMAT0012846 rno-miR-201 309758 Herc4 uucuuGUUACGGAAUGACUca || | |: |||||| uuguuCACUACUGUACUGAug 3 17 102 122 [rn4:20:25665479-25665499:+] 0.6946 132 0 -8.18 -0.1494 MIMAT0012851 rno-miR-547 309758 Herc4 gagugaauuucuuCAUGGUu |||||| agaaccaugaauuGUACCAu 2 8 150 169 [rn4:20:25665527-25665546:+] 0.6946 120 6 -8.70 -0.1737 MIMAT0012856 rno-miR-759 309758 Herc4 cagUUUUAACAAACGUGA-GACg ||||||||| |||| ||| cuaAAAAUUGUU--CACUACUGu 2 20 95 115 [rn4:20:25665472-25665492:+] 0.6946 136 0 -15.69 -1.1143 MIMAT0000600 rno-miR-129 309758 Herc4 cguucgggucuggcGUUUUUc |||||| cugaugaugaaagcCAAAAAu 2 8 117 137 [rn4:20:25665494-25665514:+] 0.6946 120 6 -5.45 -0.2335 MIMAT0000611 rno-miR-135b 309758 Herc4 aguGUAUCCUUACU--UUUCGGUau ::|| :|||| ||||||| uacUGUACUGAUGAUGAAAGCCAaa 3 21 110 134 [rn4:20:25665487-25665511:+] 0.6946 139 0 -13.49 -0.6111 MIMAT0000615 rno-miR-101b 309758 Herc4 aaguCGA-UAGUGUCAUGACau |:| | :|| |||||| aauuGUUCACUACUGUACUGau 3 18 100 121 [rn4:20:25665477-25665498:+] 0.6946 132 0 -12.61 -0.1454 MIMAT0000810 rno-miR-31 309758 Herc4 guCGAUACGGUCGU--AGAACGGa |:|| :| |:| ||||||| gaGUUACUUCUGUAAUUCUUGCCu 2 21 73 96 [rn4:20:25665450-25665473:+] 0.6946 151 7 -19.01 -1.2981 MIMAT0000823 rno-miR-101a 309758 Herc4 aaguCAA-UAGUGUCAUGACau ||| | :|| |||||| aauuGUUCACUACUGUACUGau 3 18 100 121 [rn4:20:25665477-25665498:+] 0.6946 136 0 -12.05 -0.1454 MIMAT0000841 rno-miR-135a 309758 Herc4 aguGUAUCCUUAUU--UUUCGGUau ::|| :||:| ||||||| uacUGUACUGAUGAUGAAAGCCAaa 3 21 110 134 [rn4:20:25665487-25665511:+] 0.6946 135 0 -11.02 -0.6111 MIMAT0000845 rno-miR-139-5p 309758 Herc4 gaccucugugcacGUGACAUcu :|||||| aaaaauuguucacUACUGUAcu 3 10 97 118 [rn4:20:25665474-25665495:+] 0.6946 121 0 -9.65 -0.1415 MIMAT0000845 rno-miR-139-5p 309758 Herc4 gaccucugugcacgUGACAUcu |||||| gccaaaaauuaaaaACUGUAca 3 9 129 150 [rn4:20:25665506-25665527:+] 0.6946 120 0 -5.21 -0.3078 MIMAT0000848 rno-miR-142-3p 309758 Herc4 agguauuucauccuuuGUGAUGu |||||| uugccuaaaaauuguuCACUACu 2 8 91 113 [rn4:20:25665468-25665490:+] 0.6946 120 6 -10.99 -0.1913 MIMAT0000850 rno-miR-144 309758 Herc4 ucaUGUAGUAGAU-AUGACAu | ||::|: | |||||| uaaAAAUUGUUCACUACUGUa 2 18 96 116 [rn4:20:25665473-25665493:+] 0.6946 121 6 -7.88 -1.2595 MIMAT0000859 rno-miR-181b 309758 Herc4 ugggUGGC-UGUC--GUUACUU-ACAa ||:| |||| | ||||| ||| aaaaACUGUACAGAACCAUGAAUUGUa 2 20 139 165 [rn4:20:25665516-25665542:+] 0.6946 125 0 -14.55 -1.1297 MIMAT0000863 rno-miR-186 309758 Herc4 ucggguuuuccucUUAAGAAac ||||||| gaguuacuucuguAAUUCUUgc 3 10 73 94 [rn4:20:25665450-25665471:+] 0.6946 125 0 -8.58 -0.1563 MIMAT0000873 rno-miR-200c 309758 Herc4 gguaguaaugggccgUCAUAAu |||||| ccucauaaacauacaAGUAUUg 2 8 170 191 [rn4:20:25665547-25665568:+] 0.6946 120 6 -11.48 -0.1679 MIMAT0000875 rno-miR-200b 309758 Herc4 caGUAGUAAUGGUCCG-UCAUAAu | |||| | || | |||||| auCCUCAUAAACAUACAAGUAUUg 2 22 168 191 [rn4:20:25665545-25665568:+] 0.6946 129 6 -11.25 -1.1710 MIMAT0001538 rno-miR-429 309758 Herc4 ugccGUAAUGGUCUG-UCAUAAu ||| | || || |||||| uccuCAUAAACAUACAAGUAUUg 2 19 169 191 [rn4:20:25665546-25665568:+] 0.6946 130 6 -10.88 -1.1710 MIMAT0003200 rno-miR-487b 309758 Herc4 ucACCUACUGG-GACAUG-CUAa | | | ||: |||||| ||| aaUUGUUCACUACUGUACUGAUg 2 20 100 122 [rn4:20:25665477-25665499:+] 0.6946 122 0 -11.28 -1.1867 MIMAT0003381 rno-miR-499 309758 Herc4 uuUGUAGUGACGUUCAGAAUu |:| ||:| ||||:||| gaAUA-CAUU-AAAGUUUUAc 2 20 193 211 [rn4:20:25665570-25665588:+] 0.6946 135 0 -9.45 -0.2982 MIMAT0005299 rno-miR-181d 309758 Herc4 ugGGUGGCUGUUGUUACUU-ACAa |::: | ||| ||||| ||| aaCUGUACAGAACCAUGAAUUGUa 2 22 142 165 [rn4:20:25665519-25665542:+] 0.6946 125 0 -12.73 -1.1276 MIMAT0005300 rno-miR-182 309758 Herc4 gcCACACUCAAGA---UGGUAACGGUUu | || | |||| |:: ||||| | gaGAGUUACUUCUGUAAUUCUUGCCUAa 2 24 71 98 [rn4:20:25665448-25665475:+] 0.6946 126 0 -15.85 -0.1302

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099848 Herc4 Rattus norvegicus 309758

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Herc4 RAID00002258 rno-miR-182 miRNA MIMAT0005300 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID00019006 rno-miR-200c-3p miRNA MIMAT0000873 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID00461210 rno-miR-101b-3p miRNA MIMAT0000615 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID00592473 rno-miR-181d-5p miRNA MIMAT0005299 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID00657348 rno-miR-499-5p miRNA MIMAT0003381 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID00669181 rno-miR-101a-3p miRNA MIMAT0000823 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID00761808 rno-miR-144-3p miRNA MIMAT0000850 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID01068204 rno-miR-487b-3p miRNA MIMAT0003200 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID01070869 rno-miR-129-5p miRNA MIMAT0000600 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID01181679 rno-miR-142-3p miRNA MIMAT0000848 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID01336275 rno-miR-186-5p miRNA MIMAT0000863 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID01664788 rno-miR-139-5p miRNA MIMAT0000845 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID01820689 rno-miR-183-3p miRNA MIMAT0017141 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID02025559 rno-miR-135a-5p miRNA MIMAT0000841 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID02058090 rno-miR-3585-5p miRNA MIMAT0017878 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID02151344 rno-miR-152-5p miRNA MIMAT0017134 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID02259274 rno-miR-429 miRNA MIMAT0001538 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID02455107 rno-miR-31a-5p miRNA MIMAT0000810 Herc4 mRNA 309758 Prediction 0.2202 Herc4 RAID02636352 rno-miR-181b-5p miRNA MIMAT0000859 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID02832550 rno-miR-135b-5p miRNA MIMAT0000611 Herc4 mRNA 309758 Prediction 0.1828 Herc4 RAID03910250 rno-miR-200b-3p miRNA MIMAT0000875 Herc4 mRNA 309758 Prediction 0.1828