DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 34648 aret uggucauggacuacaUUAUGAgu |||||| aagaaaauuuauaaaAAUACUaa 3 9 479 501 [dm3:2L:12312771-12312793:+] 0.4724 120 0 -6.94 -0.2676 MIMAT0000117 dme-miR-12 34648 aret uggucauggacuacaUUAUGAgu |||||| aagaaaauuuauaaaAAUACUaa 3 9 479 501 [dm3:2L:12312771-12312793:+] 0.4724 120 0 -6.94 -0.3109 MIMAT0000343 dme-miR-280 34648 aret auagUAAAGUAUACGU-UGCAUUUAUgu | ||:||| | || |||||| agaaAAUUUAUAAAAAUAC-UAAAUA-- 3 24 480 504 [dm3:2L:12312772-12312796:+] 0.4724 136 0 -4.58 -0.4524 MIMAT0000343 dme-miR-280 34648 aret auaGUAAAGUAUACGUUGCAUUUAUGu |||| | | | :| ||||||: aacCAUUGCCU-UUUA--UUAAAUAUu 2 25 418 441 [dm3:2L:12311368-12311391:+] 0.6226 131 0 -5.04 -0.1344 MIMAT0000343 dme-miR-280 34648 aret auaguaaaguauacguugcaUUUAUGu |||||| aaaaaaaaaaaacgaaaaucAAAUACc 2 8 256 282 [dm3:2L:12311206-12311232:+] 0.5518 120 6 -6.42 -0.3879 MIMAT0000363 dme-miR-288 34648 aret guacuuuaCUUUAGCUGUACUUu |||| |||||||| caaaagcaGAAAAAGACAUGAAa 2 16 172 194 [dm3:2L:12311122-12311144:+] 0.4731 159 7 -15.92 -0.9697 MIMAT0000364 dme-miR-289 34648 aret ucagcguccgagGUGAAUUUAUAAau :|| |||||||| aauuuauaaaaaUAC-UAAAUAUUau 3 15 484 508 [dm3:2L:12312776-12312800:+] 0.4724 132 0 -5.94 -0.4091 MIMAT0000364 dme-miR-289 34648 aret ucagcguCCGAGGUGAAUUUAUAAAu | ||:: |||||||||| aaccauuGCCUUUUAUUAAAUAUUUu 2 20 418 443 [dm3:2L:12311368-12311393:+] 0.6226 163 7 -11.39 -1.2522 MIMAT0000388 dme-miR-303 34648 aret uggucaaAGG-ACACUUUGGAUUu ||: | | |||||||| uggaaaaUCUGUAUAAAACCUAAu 2 17 387 410 [dm3:2L:12312679-12312702:+] 0.4497 151 7 -13.79 -1.0449 MIMAT0000388 dme-miR-303 34648 aret uggucaaAGG-ACACUUUGGAUUu ||: | | |||||||| uggaaaaUCUGUAUAAAACCUAAu 2 17 387 410 [dm3:2L:12312679-12312702:+] 0.4497 151 7 -13.79 -1.0458 MIMAT0000388 dme-miR-303 34648 aret uggucaaaggacacuuUGGAUUu |||||| aaaacgaaaaucaaauACCUAAa 2 8 264 286 [dm3:2L:12311214-12311236:+] 0.5518 120 6 -10.32 -0.4625 MIMAT0005475 dme-miR-961 34648 aret uagagucaaugaccaCUAGUUu |||||| aauaccuaaaaacaaGAUCAAa 2 8 277 298 [dm3:2L:12311227-12311248:+] 0.5518 120 6 -8.17 -0.2988 MIMAT0005018 dme-miR-1005 34648 aret gaCGCUUAAUUUCUAAGGUcu |: |||| :| |||||| cuGUAAAUUUGA-AUUCCAaa 3 20 359 378 [dm3:2L:12312651-12312670:+] 0.4271 137 0 -9.76 -0.1688 MIMAT0005018 dme-miR-1005 34648 aret gaCGCUUAAUUUCUAAGGUcu |: |||| :| |||||| cuGUAAAUUUGA-AUUCCAaa 3 20 359 378 [dm3:2L:12312651-12312670:+] 0.4271 137 0 -9.76 -0.1694 MIMAT0005026 dme-miR-1013 34648 aret gcucaagccguauGAAAAUa |||||| guugaaccauugcCUUUUAu 2 8 414 433 [dm3:2L:12311364-12311383:+] 0.6226 120 6 -6.22 -0.1561 MIMAT0011784 dme-miR-2279* 34648 aret uuAAAGUGUGUGUCUAUAAAuu |||:|: :| |||||| ccUUUUAU---UAAAUAUUUug 3 21 426 444 [dm3:2L:12311376-12311394:+] 0.6226 128 0 -1.99 -0.2802 MIMAT0011791 dme-miR-2283 34648 aret uaacAGCAUAAGUACUAUAAAAg |: |||| | ||||||| ugccUUUUAUUAA--AUAUUUUg 2 20 424 444 [dm3:2L:12311374-12311394:+] 0.6226 152 7 -2.72 -1.2323 MIMAT0012196 dme-miR-2489 34648 aret ugaCGUUUAUGUUGUAUG-UUAu || :|| |:||||| ||| uaaGCUUGUAAAGCAUACUAAUu 2 20 450 472 [dm3:2L:12312742-12312764:+] 0.4724 127 0 -11.80 -1.0366 MIMAT0012196 dme-miR-2489 34648 aret ugaCGUUUAUGUUGUAUG-UUAu || :|| |:||||| ||| uaaGCUUGUAAAGCAUACUAAUu 2 20 450 472 [dm3:2L:12312742-12312764:+] 0.4724 127 0 -11.80 -1.0387 MIMAT0012199 dme-miR-2492 34648 aret aaacuuucgagagcugUUUUGUa |||||| acguaucauaaaaaaaAAAACAa 2 8 146 168 [dm3:2L:12311096-12311118:+] 0.4949 120 6 -3.35 -0.2675 MIMAT0012199 dme-miR-2492 34648 aret aaacuuucgagagcugUUUUGUa |||||| gaaaaucaaauaccuaAAAACAa 2 8 269 291 [dm3:2L:12311219-12311241:+] 0.5518 120 6 -4.44 -0.2042 MIMAT0012210 dme-miR-2498* 34648 aret guuuuuauucguauuguCGGAAAu |||||| gaguugguugaaccauuGCCUUUu 2 8 408 431 [dm3:2L:12311358-12311381:+] 0.6226 120 6 -9.63 -0.2320 MIMAT0012211 dme-miR-2498 34648 aret uucaUUCUGCCCUUACGGU--CAAa | ||:| |||||||| ||| aacgAUGAUGCGAAUGCCAACGUUa 2 20 120 144 [dm3:2L:12311070-12311093,12312376-12312376:+] 0.5112 123 0 -16.45 -0.5542 MIMAT0012211 dme-miR-2498 34648 aret uucaUUCUGCCCUUACGGU--CAAa | ||:| |||||||| ||| aacgAUGAUGCGAAUGCCAACGUUa 2 20 120 144 [dm3:2L:12311070-12311093,12312376-12312376:+] 0.5112 123 0 -16.45 -0.5552 MIMAT0012211 dme-miR-2498 34648 aret uucaUUCUGCCCUUACGGU--CAAa | ||:| |||||||| ||| aacgAUGAUGCGAAUGCCAACGUUg 2 20 120 144 [dm3:2L:12311070-12311094:+] 0.5954 123 0 -16.33 -0.7344 MIMAT0012215 dme-miR-2500 34648 aret gacuccaGGUGUGUGUUUUAGg |:| | ||||:||| caaauacCUAAAAACAAGAUCa 2 16 275 296 [dm3:2L:12311225-12311246:+] 0.5518 139 0 -12.00 -0.1433 MIMAT0012215 dme-miR-2500 34648 aret gacuccaggugugugUUUUAGg |||||| aaaaaaaaaaaaacgAAAAUCa 2 8 255 276 [dm3:2L:12311205-12311226:+] 0.5518 120 6 -5.99 -0.4160 MIMAT0000120 dme-miR-14 34648 aret auccUCUC-UCUUUUUCUG-ACu | || |||||||||| || aacaAAAGCAGAAAAAGACAUGa 2 18 170 192 [dm3:2L:12311120-12311142:+] 0.4731 132 0 -16.49 -1.1786 MIMAT0000332 dme-miR-274 34648 aret uaAUG-GGCAAUCACAGCCAGUGUUUu ||| :| | | || | ||||||| uaUACAUCCUCA-UGAC--UCACAAAc 2 25 445 468 [dm3:2L:12311395-12311418:+] 0.5507 146 7 -10.11 -0.6072 MIMAT0000347 dme-miR-283 34648 aret ucuuaauggucgacUAUAAAu |||||| uugccuuuuauuaaAUAUUUu 2 8 423 443 [dm3:2L:12311373-12311393:+] 0.6226 120 6 -4.01 -0.1986 MIMAT0000351 dme-miR-124 34648 aret gaaccguaaguggcgcACGGAAu |||||| gaguugguugaaccauUGCCUUu 2 8 408 430 [dm3:2L:12311358-12311380:+] 0.6226 120 6 -17.20 -0.2445 MIMAT0000356 dme-miR-285 34648 aret cgugaCUAAAGCUUACCA-CGAu ||| || |:|||| ||| aaugcGAUGUCAAGUGGUAGCUg 2 18 190 212 [dm3:2L:12312422-12312444:+] 0.4271 129 0 -16.13 -0.4820 MIMAT0000356 dme-miR-285 34648 aret cgugaCUAAAGCUUACCA-CGAu ||| || |:|||| ||| aaugcGAUGUCAAGUGGUAGCUg 2 18 190 212 [dm3:2L:12312422-12312444:+] 0.4271 129 0 -16.13 -0.4830 MIMAT0000362 dme-miR-263b 34648 aret caCUUAAGAGGGUCACGGUUc ||| ||| ||||||| auGAAAUCU----GUGCCAAa 2 20 189 205 [dm3:2L:12311139-12311155:+] 0.5518 146 7 -13.74 -1.2451 MIMAT0000390 dme-miR-304 34648 aret gaguguaaaugUUUAACUCUAAu | | ||||||| cgaguagaggaACACUGAGAUUu 2 13 36 58 [dm3:2L:12310986-12311008:+] 0.3194 144 7 -8.46 -0.1571 MIMAT0000390 dme-miR-304 34648 aret gaguguaaaugUUUAACUCUAAu | | ||||||| cgaguagaggaACACUGAGAUUu 2 13 36 58 [dm3:2L:12310986-12311008:+] 0.3194 144 7 -8.46 -0.1576 MIMAT0000390 dme-miR-304 34648 aret gaguguaaaugUUUAACUCUAAu | | ||||||| cgaguagaggaACACUGAGAUUu 2 13 36 58 [dm3:2L:12310986-12311008:+] 0.3194 144 7 -8.46 -0.1594 MIMAT0000395 dme-miR-9b 34648 aret guaUGUCGAUUUUAGUGGUUUCu |:| |||| |:| ||||| agcAUA-CUAAUUUUAACAAAGa 2 21 461 482 [dm3:2L:12312753-12312774:+] 0.4724 130 0 -12.89 -0.1324 MIMAT0000395 dme-miR-9b 34648 aret guaUGUCGAUUUUAGUGGUUUCu |:| |||| |:| ||||| agcAUA-CUAAUUUUAACAAAGa 2 21 461 482 [dm3:2L:12312753-12312774:+] 0.4724 130 0 -12.89 -0.1324 MIMAT0000407 dme-miR-315 34648 aret cgaaagacUCGUUGUUAGUUUu | |:| ||||||| aaaaaaaaAACGAAAAUCAAAu 2 15 258 279 [dm3:2L:12311208-12311229:+] 0.5518 150 7 -7.61 -1.2056 MIMAT0000407 dme-miR-315 34648 aret cgaaagacUCGUUGUUAGUUUu | ||| :|||||| uaccuaaaAACAA-GAUCAAAa 2 15 279 299 [dm3:2L:12311229-12311249:+] 0.5518 132 6 -8.38 -0.2753 MIMAT0000408 dme-miR-316 34648 aret gcggucaUUCGCCUUUUUCUGu |||| ||||||||| aaaacaaAAGCAGAAAAAGACa 2 16 168 189 [dm3:2L:12311118-12311139:+] 0.4731 167 7 -17.98 -1.1256 MIMAT0000408 dme-miR-316 34648 aret gcggucauucgccUUUUUCUGu |||||||| aucugugccaaaaAAAAAGACa 2 10 194 215 [dm3:2L:12311144-12311165:+] 0.5518 145 7 -14.32 -1.2669 MIMAT0000408 dme-miR-316 34648 aret gcggucaUUCGCCUUUUUCUgu ||| ||||||| uaaaaacAAGAUCAAAAAGAaa 3 16 283 304 [dm3:2L:12311233-12311254:+] 0.5518 131 0 -8.44 -0.1006 MIMAT0000412 dme-miR-iab-4-5p 34648 aret aguccUAUGUAAGUCAUAUGca | |:|||: |||||| uuauuAAAUAUUUUGUAUACau 3 18 430 451 [dm3:2L:12311380-12311401:+] 0.6409 141 0 -8.77 -0.1171 MIMAT0000413 dme-miR-iab-4-3p 34648 aret caaugcaUAUGACUUCCAUAUGgc |||:| |||||| uuauuaaAUAUU--UUGUAUACau 3 18 430 451 [dm3:2L:12311380-12311401:+] 0.6409 122 0 -7.27 -0.1159 MIMAT0005466 dme-miR-955 34648 aret cuGUGAGUUUGGAGACGUGCUAc ||||:| : :|: ||||| | auCACUUAUGAUUUAGCACGUUa 2 22 218 240 [dm3:2L:12311168-12311190:+] 0.5518 133 0 -17.68 -0.1498 MIMAT0005474 dme-miR-960 34648 aret cgauacguuagaccUUAUGAgu |||||| agaaaauuuauaaaAAUACUaa 3 9 480 501 [dm3:2L:12312772-12312793:+] 0.4724 120 0 -3.86 -0.2676 MIMAT0005474 dme-miR-960 34648 aret cgauacguuagaccUUAUGAgu |||||| agaaaauuuauaaaAAUACUaa 3 9 480 501 [dm3:2L:12312772-12312793:+] 0.4724 120 0 -3.86 -0.3109 MIMAT0005486 dme-miR-970 34648 aret uaucggcgcacacaGAAUACu |||||| aaaagacagaaucaCUUAUGa 2 8 208 228 [dm3:2L:12311158-12311178:+] 0.5518 120 6 -8.26 -0.1104 MIMAT0005514 dme-miR-995 34648 aret uucgGCU-UAGUACACCA-CGAu ||| :||| ||||| ||| aaugCGAUGUCAAGUGGUAGCUg 2 18 190 212 [dm3:2L:12312422-12312444:+] 0.4271 128 0 -21.13 -0.4956 MIMAT0005514 dme-miR-995 34648 aret uucgGCU-UAGUACACCA-CGAu ||| :||| ||||| ||| aaugCGAUGUCAAGUGGUAGCUg 2 18 190 212 [dm3:2L:12312422-12312444:+] 0.4271 128 0 -21.13 -0.4967 MIMAT0005519 dme-miR-999 34648 aret ucUGUGUCAGAAUGUCAAUUGu | || || | :||||||| uuAGACCGUAGUUUAGUUAACu 2 21 320 341 [dm3:2L:12311270-12311291:+] 0.5928 156 7 -16.65 -1.1017 MIMAT0005027 dme-miR-1014 34648 aret gacgUUUACUUUU--ACUUAAaa || || ||| |||||| caaaAACUGUAAAUUUGAAUUcc 3 18 353 375 [dm3:2L:12312645-12312667:+] 0.4271 136 0 -11.31 -0.1257 MIMAT0005027 dme-miR-1014 34648 aret gaCGUUUACUU-UUACU-UAAAa |:|:| ||| | ||| |||| gaGUAGAGGAACACUGAGAUUUg 2 20 37 59 [dm3:2L:12310987-12311009:+] 0.3194 126 0 -7.54 -0.3224 MIMAT0005027 dme-miR-1014 34648 aret gacgUUUACUUUU--ACUUAAaa || || ||| |||||| caaaAACUGUAAAUUUGAAUUcc 3 18 353 375 [dm3:2L:12312645-12312667:+] 0.4271 136 0 -11.31 -0.1261 MIMAT0005027 dme-miR-1014 34648 aret gaCGUUUACUU-UUACU-UAAAa |:|:| ||| | ||| |||| gaGUAGAGGAACACUGAGAUUUg 2 20 37 59 [dm3:2L:12310987-12311009:+] 0.3194 126 0 -7.54 -0.3232 MIMAT0005027 dme-miR-1014 34648 aret gaCGUUUACUU--UUACUUAAaa ||| :| || : |||||| uaGCACGUUAAUUGUUGAAUUag 3 20 231 253 [dm3:2L:12311181-12311203:+] 0.5518 130 0 -4.87 -0.1440 MIMAT0005027 dme-miR-1014 34648 aret gaCGUUUACUU-UUACU-UAAAa |:|:| ||| | ||| |||| gaGUAGAGGAACACUGAGAUUUg 2 20 37 59 [dm3:2L:12310987-12311009:+] 0.3194 126 0 -7.54 -0.3264

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score aret RAID00151107 dme-miR-14-3p miRNA MIMAT0000120 aret mRNA 34648 Prediction 0.1828 aret RAID00230260 dme-miR-316-5p miRNA MIMAT0000408 aret mRNA 34648 Prediction 0.2202 aret RAID00384400 dme-miR-970-3p miRNA MIMAT0005486 aret mRNA 34648 Prediction 0.1828 aret RAID00607759 dme-miR-999-3p miRNA MIMAT0005519 aret mRNA 34648 Prediction 0.1828 aret RAID00825628 dme-miR-263b-5p miRNA MIMAT0000362 aret mRNA 34648 Prediction 0.2202 aret RAID00919736 dme-miR-9b-5p miRNA MIMAT0000395 aret mRNA 34648 Prediction 0.1828 aret RAID00936473 dme-miR-303-5p miRNA MIMAT0000388 aret mRNA 34648 Prediction 0.1828 aret RAID00971161 dme-miR-285-3p miRNA MIMAT0000356 aret mRNA 34648 Prediction 0.1828 aret RAID01038138 dme-miR-955-5p miRNA MIMAT0005466 aret mRNA 34648 Prediction 0.1828 aret RAID01112324 dme-miR-315-5p miRNA MIMAT0000407 aret mRNA 34648 Prediction 0.1828 aret RAID01351553 dme-miR-124-3p miRNA MIMAT0000351 aret mRNA 34648 Prediction 0.1828 aret RAID02506957 dme-miR-iab-4-5p miRNA MIMAT0000412 aret mRNA 34648 Prediction 0.1828 aret RAID02519202 dme-miR-995-3p miRNA MIMAT0005514 aret mRNA 34648 Prediction 0.1828 aret RAID02645388 dme-miR-283-5p miRNA MIMAT0000347 aret mRNA 34648 Prediction 0.1828 aret RAID02972200 dme-miR-274-5p miRNA MIMAT0000332 aret mRNA 34648 Prediction 0.1828 aret RAID03570306 dme-miR-iab-4-3p miRNA MIMAT0000413 aret mRNA 34648 Prediction 0.1828 aret RAID03762460 dme-miR-960-5p miRNA MIMAT0005474 aret mRNA 34648 Prediction 0.1828 aret RAID03893858 dme-miR-304-5p miRNA MIMAT0000390 aret mRNA 34648 Prediction 0.2202 aret RAID04010032 dme-miR-1014-3p miRNA MIMAT0005027 aret mRNA 34648 Prediction 0.1828