DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 44505 br auAGUAAAGUAUAC----GUUGCAUUUAUGu |: || | ||| :||| ||||||| aaUUCUUCGAAAUGGCUUUAAC-UAAAUACa 2 26 583 612 [dm3:X:1538381-1538410:+] 0.6306 150 7 -11.81 -1.0373 MIMAT0000394 dme-miR-306* 44505 br cguGUCCGUGU-CU--CACUGGGGg || | || || ||||||| gacCAUGACCAUGACCAUGACCCCg 2 20 90 114 [dm3:X:1548765-1548789:+] 0.4833 141 7 -16.09 -0.3282 MIMAT0005464 dme-miR-iab-4as-3p 44505 br auuUGC--AU-AUGACUUACAUAGg ||| || | :| :|||||| auuACGAUUAUUUUUUUGUGUAUCc 2 20 301 325 [dm3:X:1553936-1553960:+] 0.5016 129 6 -14.26 -0.2218 MIMAT0005465 dme-miR-954 44505 br uguGUG-UUGCGU-UGUGGGUCu ||| || || |||||||| acuCACUCACUCACACACCCAGa 2 19 191 213 [dm3:X:1537989-1538011:+] 0.5076 156 7 -23.42 -0.7141 MIMAT0005465 dme-miR-954 44505 br ugUGUGUUGC-GUU---GUGGGUCu :| || :| |:| ||||||| acGCCCACUGUCGAUCUCACCCAGc 2 20 187 211 [dm3:X:1542933-1542957:+] 0.5737 141 7 -20.69 -0.1481 MIMAT0005473 dme-miR-959 44505 br aaGUAUUAUGGGGGCUA-CUGUu :| ||| : :||||| |||| aaUACAAUUUAUCCGAUGGACAg 2 21 607 629 [dm3:X:1538405-1538427:+] 0.5472 128 0 -18.26 -0.6562 MIMAT0005494 dme-miR-978 44505 br gacguUAAAUGCCGUGACCUGu :||| | ||||||||| ccauuGUUUUC-GCACUGGACc 2 18 124 144 [dm3:X:1553759-1553779:+] 0.5842 159 7 -18.09 -0.1959 MIMAT0005498 dme-miR-982 44505 br uaaaugaagUAUAAACAGGUCCu || |||||||| ccaaucccaAUCCCUGUCCAGGu 2 15 513 535 [dm3:X:1538311-1538333:+] 0.4954 146 7 -14.77 -0.3657 MIMAT0005499 dme-miR-983 44505 br aguaaUCAAGCUUUGCAUAAUa | || |:||||||| aauacAAUUAAUAGCGUAUUAu 2 18 533 554 [dm3:X:1549208-1549229:+] 0.5020 149 7 -10.36 -0.8837 MIMAT0005509 dme-miR-991 44505 br ugAAAGGUUUGAUGUUGA-AAUu ||| :| || :|||| ||| uuUUUGUACACAUUAACUAUUAa 2 21 241 263 [dm3:X:1538039-1538061:+] 0.5147 124 0 -7.23 -0.6283 MIMAT0005026 dme-miR-1013 44505 br gcucAAGCCGUAUGAAAAUa ||:| | ||||||| gacaUUUGAAACACUUUUAg 2 17 590 609 [dm3:X:1549265-1549284:+] 0.5020 152 7 -6.66 -0.4402 MIMAT0011784 dme-miR-2279* 44505 br uuaAAGUGUGUGU-CUAUAAAUu |||| |: || ||||||| uaaUUCA-AUUCAUUAUAUUUAc 2 20 1358 1379 [dm3:X:1539156-1539177:+] 0.5016 152 7 -7.31 -0.9511 MIMAT0011784 dme-miR-2279* 44505 br uuaaagugugugucUAUAAAUu ||||||| uuuggauuuuuuguAUAUUUAa 2 9 1081 1102 [dm3:X:1538879-1538900:+] 0.4586 140 7 -4.31 -1.1511 MIMAT0011785 dme-miR-2279 44505 br uuUAUUUAUAGAAG-CGCACUUu || | |||| | ||||||| ggAUCUAGAUCUCCAGCGUGAAc 2 21 192 214 [dm3:X:1553827-1553849:+] 0.4991 159 7 -14.00 -0.3728 MIMAT0011786 dme-miR-2280 44505 br uauaaaauaacggUUCGAUUCu :||||||| -------------GAGCUAAGu 2 10 1 9 [dm3:X:1553636-1553644:+] 0.7824 141 7 -9.24 -1.0234 MIMAT0011788 dme-miR-2281* 44505 br aacgUA-GACGUCGACGUCUAUUa || | ||||| ||||||| gcuaAUACAGCAGCGACAGAUAAu 2 20 243 266 [dm3:X:1548918-1548941:+] 0.4911 162 7 -18.90 -0.2414 MIMAT0011789 dme-miR-2281 44505 br cgUUAUGACGUC---UAUGUCUAu :|||| |||| |||||||| agGAUAC-GCAGUUUAUACAGAUu 2 20 351 373 [dm3:X:1538149-1538171:+] 0.5204 160 7 -18.79 -0.8241 MIMAT0011791 dme-miR-2283 44505 br uaACAGCAU-AAGUAC-UAUAAAag | |:| | ||: || |||||| uuUUUUGGAUUUUUUGUAUAUUUaa 3 22 1078 1102 [dm3:X:1538876-1538900:+] 0.4586 135 0 -3.90 -0.1213 MIMAT0011791 dme-miR-2283 44505 br uaacaGCAUAAGUACUAUAAAAg | |||| : ||||||| uuaagCAUAUUAGGCAUAUUUUg 2 19 236 258 [dm3:X:1553871-1553893:+] 0.5016 154 7 -4.14 -0.2661 MIMAT0011791 dme-miR-2283 44505 br uaACAG--CAUAAGUA---CU-AUAAAAg |||: ||| |:|| || |||||| uaUGUUAGGUAAUUAUUACGAUUAUUUUu 2 22 287 315 [dm3:X:1553922-1553950:+] 0.5016 123 6 -5.74 -0.8308 MIMAT0012196 dme-miR-2489 44505 br ugacguuuaUGUUGUAUGUUAu || | ||||||| auggcuuuaACUAAAUACAAUu 2 14 594 615 [dm3:X:1538392-1538413:+] 0.6306 149 7 -8.94 -1.1439 MIMAT0012196 dme-miR-2489 44505 br ugACGUUUAUGUUGUAU-GUUAu | | ||||| | ||| |||| aaUCCCAAUACCA-AUACCAAUc 2 21 485 506 [dm3:X:1538283-1538304:+] 0.4954 126 0 -5.27 -0.2993 MIMAT0012196 dme-miR-2489 44505 br ugacguuuauguuguAUGUUAu |||||| ucaauucauuauauuUACAAUa 2 8 1362 1383 [dm3:X:1539160-1539181:+] 0.5016 120 6 -8.10 -0.2504 MIMAT0012196 dme-miR-2489 44505 br ugacGUUUAUG-UUG-UAUGUUAu |:| ||| ||| ||||||| gcgaCGAUUACAAACAAUACAAUu 2 19 518 541 [dm3:X:1549193-1549216:+] 0.5020 160 7 -13.87 -1.0167 MIMAT0012198 dme-miR-2491 44505 br ucGUUGACGUUUCCGUUGUCGc | || |||||| ||||||| ugCCACAGCAAAGCCAACAGCc 2 21 35 56 [dm3:X:1548710-1548731:+] 0.5242 176 7 -20.87 -0.1606 MIMAT0012198 dme-miR-2491 44505 br ucGUUGACGUU-UCCGUUGUCGc | || |||| | ||||||| agCCACAGCAACAAUCAACAGCg 2 21 53 75 [dm3:X:1548728-1548750:+] 0.5037 159 7 -21.29 -0.5448 MIMAT0012201 dme-miR-2493 44505 br ugcggaGCGUGUUUAUGUGUGCc ||||| : ||||||| guuaagCGCACCGUAACACACGc 2 18 971 993 [dm3:X:1538769-1538791:+] 0.5071 157 7 -20.89 -0.1671 MIMAT0012205 dme-miR-2495* 44505 br ccgcccguaaaguuaaUCCACGGc ||||||| aauaaggagcuaacagAGGUGCCc 2 9 553 576 [dm3:X:1538351-1538374:+] 0.5565 140 7 -17.37 -0.1488 MIMAT0012206 dme-miR-2496* 44505 br augcuaccgGAGAGUGUGUGCGUg | | |:|||||||| gcaccguaaCACACGCACACGCAc 2 16 978 1001 [dm3:X:1538776-1538799:+] 0.5071 155 7 -23.17 -0.1217 MIMAT0012209 dme-miR-2497 44505 br gaCGUU--UGUAACAUUUACAACa |:|| |:| | |||||||| gaGUAAUGAUACCG-AAAUGUUGa 2 21 1122 1144 [dm3:X:1538920-1538942:+] 0.4586 149 7 -10.05 -0.5237 MIMAT0012214 dme-miR-2500* 44505 br ccaUAACAUAUACACACA-AGGAAug ||| | | | ||||| ||||| acgAUUAUUUUUUUGUGUAUCCUU-- 3 23 304 327 [dm3:X:1553939-1553962:+] 0.5016 122 0 -9.57 -0.2046 MIMAT0012215 dme-miR-2500 44505 br gacuccaGGUGUGUGUU-UUAGg ||||| :||| |||| ccaacagCCACA-GCAACAAUCa 2 16 48 69 [dm3:X:1548723-1548744:+] 0.5037 121 0 -13.76 -0.2932 MIMAT0012216 dme-miR-2501 44505 br aaucgGGUCCGUGAGGUUUGAAUg |:| || :|||||||| uagaaCUAAGC---UCAAACUUAa 2 20 399 419 [dm3:X:1549074-1549094:+] 0.6125 147 7 -14.36 -0.9604 MIMAT0000110 dme-miR-5 44505 br guaUAGUGUUGCUAGCAA-GGAAa :|:||||: | ||| |||| cuaGUUACAAU--UAGUUGCCUUc 2 21 313 334 [dm3:X:1538111-1538132:+] 0.5204 121 0 -11.97 -0.2432 MIMAT0000319 dme-miR-263a 44505 br cacUUAAGAAGGUCACG-GUAAUUg ::| |||:: || | |||||| gacGGUGCUUUUUGUACACAUUAAc 2 22 233 257 [dm3:X:1538031-1538055:+] 0.5147 129 6 -14.01 -0.6221 MIMAT0000345 dme-miR-281 44505 br ugUUUCUCUCGUUAAGGUACUGu ||||| |||| ||||||| ugAAAGACAGCACGACCAUGACc 2 22 77 99 [dm3:X:1548752-1548774:+] 0.4833 173 7 -20.29 -0.3155 MIMAT0000345 dme-miR-281 44505 br uguuucuCUCGUUAAGGUACUGu || || ||||||| cgaccauGACCAUGACCAUGACc 2 17 89 111 [dm3:X:1548764-1548786:+] 0.4833 148 7 -12.01 -0.2153 MIMAT0000347 dme-miR-283 44505 br ucuuaauggucgacUAUAAAu |||||| uuuggauuuuuuguAUAUUUa 2 8 1081 1101 [dm3:X:1538879-1538899:+] 0.4586 120 6 -7.26 -0.1150 MIMAT0000347 dme-miR-283 44505 br ucUUAAUGGUCGACU-AUAAAu |||||::| | || ||||| guAAUUAUUA-C-GAUUAUUUu 2 20 295 314 [dm3:X:1553930-1553949:+] 0.5016 123 0 -6.58 -0.7110 MIMAT0000350 dme-miR-34 44505 br guGUUGGUCGAUUGGUGU-GACGGu |: || || |:| || ||||| gcCGCCCUGC-AGCACCACCUGCCa 2 23 250 273 [dm3:X:1542996-1543019:+] 0.5354 120 0 -26.63 -0.1169 MIMAT0000351 dme-miR-124 44505 br gaacCGUAAGUGGCGCA-CGGAAu |: | |||: :|| ||||| cacuGUUUACACUCUGUGGCCUUc 2 20 703 726 [dm3:X:1549378-1549401:+] 0.5020 123 0 -15.07 -0.6535 MIMAT0000391 dme-miR-305 44505 br gucuCGUGGAC-UACU--UCAU-GUUa || ||| |||| |||| ||| caauGCCGCUGAAUGACCAGUAUCAAc 2 20 215 241 [dm3:X:1548890-1548916:+] 0.4833 121 0 -12.71 -0.3519 MIMAT0000396 dme-let-7 44505 br ugAUAUGUUGGAUGAUGGAGu |:|||:| |||||||||| ccUGUACGA-CUACUACCUCu 2 20 270 289 [dm3:X:1548945-1548964:+] 0.4989 173 7 -27.80 -0.5109 MIMAT0000396 dme-let-7 44505 br ugauauGUUGGAUGAUGGAGu ||: || ||||||| caggcuCAGACUCCUACCUCa 2 16 148 168 [dm3:X:1548823-1548843:+] 0.4833 155 7 -17.89 -0.5352 MIMAT0000402 dme-miR-310 44505 br uuUCCGGCCCUUCACACGU-UAu ||| | ||| |||||| || gaAGGAAGCGAA-UGUGCACAUa 2 21 274 295 [dm3:X:1538072-1538093:+] 0.5218 126 0 -16.37 -0.5585 MIMAT0000403 dme-miR-311 44505 br aguccggcCACUUACACGU-UAu | ||||||||| || cgaaggaaGCGAAUGUGCACAUa 2 15 273 295 [dm3:X:1538071-1538093:+] 0.5218 126 0 -18.33 -0.5621 MIMAT0000406 dme-miR-314 44505 br ggCUUGAAUAACCGA-GCUUAu ||| ||| ||| ||||| caGAAAGUAU--GCUACGAAUg 2 20 403 422 [dm3:X:1543149-1543168:+] 0.5000 120 0 -12.17 -0.3239 MIMAT0000408 dme-miR-316 44505 br gcggucauucgccuuUUUCUGu |||||| uagcguauuauaacuAAAGACa 2 8 544 565 [dm3:X:1549219-1549240:+] 0.5020 120 6 -11.51 -0.1588 MIMAT0000409 dme-miR-317 44505 br ugACCUA-UGGUGGUCGACACAAGu | ||| | :| | |||||||| cuUUGAUGAGUA-AACCUGUGUUCg 2 23 1152 1175 [dm3:X:1538950-1538973:+] 0.4700 151 7 -19.03 -0.2424 MIMAT0005472 dme-miR-375 44505 br auugAAUUCGGUUUGCUUGUUu ||| | :|||||||| ucuaUUAUACACGACGAACAAa 2 19 461 482 [dm3:X:1549136-1549157:+] 0.5020 154 7 -14.08 -1.1263 MIMAT0005476 dme-miR-962 44505 br cuGUCGU-AGUUAAAGAGAUGG-AAUa | ||| |: |||: :|||| ||| aaCUGCACUUUUUUUUAUUACCAUUAc 2 24 752 778 [dm3:X:1538550-1538576:+] 0.5025 126 0 -11.33 -0.9111 MIMAT0005476 dme-miR-962 44505 br cuGUCGUAGUU---AAAGAGAUG-GAAUa ::||:|||| |||: :||| |||| uuUGGCGUCAACUGUUUUAUUACUCUUAu 2 24 255 283 [dm3:X:1553890-1553918:+] 0.5016 134 0 -17.47 -0.7984 MIMAT0005485 dme-miR-969 44505 br uuuugaaCGAAUC-ACCUUGag ||| || |||||| -----gaGCUAAGUUGGAACgc 3 15 1 17 [dm3:X:1553636-1553652:+] 0.7824 133 0 -13.85 -0.2852 MIMAT0005487 dme-miR-971 44505 br agugACAUUCUUCAUUGUGGUu | || | ||||||| uauaUAUACAUAUAAACACCAu 2 19 1252 1273 [dm3:X:1539050-1539071:+] 0.4814 142 7 -9.16 -0.8945 MIMAT0005493 dme-miR-977 44505 br aaUCUGUUGCACUUA-UAGAGu |||| :: ||||| ||||| uuAGAC-GUAUGAAUAAUCUCu 2 20 702 722 [dm3:X:1538500-1538520:+] 0.5025 129 0 -17.70 -0.5113 MIMAT0005506 dme-miR-989 44505 br caaGGUGAUGCAGUGU-AGUGu |||| | |||||| |||| cagCCAC-A-GUCACAGUCACa 2 19 306 325 [dm3:X:1548981-1549000:+] 0.4989 126 0 -22.83 -0.4942 MIMAT0005507 dme-miR-137 44505 br gaugcacauaaGAGUUCGUUAu :| ||||||| uaagcucaaacUUAAAGCAAUg 2 12 405 426 [dm3:X:1549080-1549101:+] 0.6125 143 7 -10.61 -0.9008 MIMAT0005024 dme-miR-1011 44505 br gacgcucgcuaaacuUGGUUAUu ||||||| aaucucaaucccaauACCAAUAc 2 9 479 501 [dm3:X:1538277-1538299:+] 0.4954 140 7 -6.15 -0.4253 MIMAT0005024 dme-miR-1011 44505 br gacgcucgcuaaACUUGGUUAUu | :||||||| gcaugaauuuacUAGACCAAUAa 2 12 371 393 [dm3:X:1543117-1543139:+] 0.5453 143 7 -10.28 -0.8034 MIMAT0005027 dme-miR-1014 44505 br gacGUUUACUU--UUACUUAAAa || ||||| |||||||| aucCAUAUGAACGCAUGAAUUUa 2 19 359 381 [dm3:X:1543105-1543127:+] 0.5354 161 7 -10.12 -0.7943

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G018830 br Drosophila melanogaster 44505

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score br RAID00014078 dme-let-7-5p miRNA MIMAT0000396 br mRNA 44505 Prediction 0.1828 br RAID00092653 dme-miR-317-3p miRNA MIMAT0000409 br mRNA 44505 Prediction 0.1828 br RAID00187594 dme-miR-969-5p miRNA MIMAT0005485 br mRNA 44505 Prediction 0.1828 br RAID00206336 dme-miR-316-5p miRNA MIMAT0000408 br mRNA 44505 Prediction 0.1828 br RAID00355081 dme-miR-314-3p miRNA MIMAT0000406 br mRNA 44505 Prediction 0.1828 br RAID00628111 dme-miR-283-5p miRNA MIMAT0000347 br mRNA 44505 Prediction 0.1828 br RAID00676777 dme-miR-311-3p miRNA MIMAT0000403 br mRNA 44505 Prediction 0.1828 br RAID00705352 dme-miR-971-3p miRNA MIMAT0005487 br mRNA 44505 Prediction 0.1828 br RAID00792919 dme-miR-281-3p miRNA MIMAT0000345 br mRNA 44505 Prediction 0.1828 br RAID01015815 dme-miR-263a-5p miRNA MIMAT0000319 br mRNA 44505 Prediction 0.1828 br RAID01071741 dme-miR-137-3p miRNA MIMAT0005507 br mRNA 44505 Prediction 0.1828 br RAID01185788 dme-let-7-5p miRNA MIMAT0000396 br protein 44505 Mutation analysis 0.7311 br RAID01646977 dme-miR-1014-3p miRNA MIMAT0005027 br mRNA 44505 Prediction 0.1828 br RAID01653539 dme-miR-962-5p miRNA MIMAT0005476 br mRNA 44505 Prediction 0.1828 br RAID01746841 dme-miR-305-5p miRNA MIMAT0000391 br mRNA 44505 Prediction 0.1828 br RAID01767599 dme-miR-375-3p miRNA MIMAT0005472 br mRNA 44505 Prediction 0.1828 br RAID01955041 dme-miR-1011-3p miRNA MIMAT0005024 br mRNA 44505 Prediction 0.1828 br RAID02130746 dme-miR-310-3p miRNA MIMAT0000402 br mRNA 44505 Prediction 0.1828 br RAID03196816 dme-miR-989-3p miRNA MIMAT0005506 br mRNA 44505 Prediction 0.1828 br RAID03378678 dme-miR-5-5p miRNA MIMAT0000110 br mRNA 44505 Prediction 0.1828 br RAID03389156 dme-miR-124-3p miRNA MIMAT0000351 br mRNA 44505 Prediction 0.1828 br RAID03799385 dme-miR-34-5p miRNA MIMAT0000350 br mRNA 44505 Prediction 0.1828 br RAID03997415 dme-miR-977-3p miRNA MIMAT0005493 br mRNA 44505 Prediction 0.1828