DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 31589 dx auaGUAAA-GUAUACGU----UGC----AU-UUAUGu ||||| ::|||||| ||| || ||||| cacCAUUUAUGUAUGCAUAUUACGCAUAUAUAAUACa 2 25 1116 1152 [dm3:X:6432527-6432563:+] 0.5046 125 0 -15.31 -0.8540 MIMAT0005488 dme-miR-972 31589 dx cggauuuaUAAGCAU-AACAUGu ||||||| |||||| cucuuccaAUUCGUAUUUGUACg 2 15 244 266 [dm3:X:6431655-6431677:+] 0.5412 134 6 -18.50 -0.4395 MIMAT0005489 dme-miR-973 31589 dx uuuuaGCUUCAAGUUGGUGGUUGGu | :||| |||:||||||| uguccCCGAGUAGAACUACCAACCa 2 21 13 37 [dm3:X:6431424-6431448:+] 0.5766 168 7 -25.49 -1.1386 MIMAT0005489 dme-miR-973 31589 dx uuuuagcuucaaGUUGG-UGGUUGGu |||:| ||||||| cuaccaaccaacCAAUCAACCAACCa 2 14 28 53 [dm3:X:6431439-6431464:+] 0.4870 152 7 -19.22 -0.6283 MIMAT0005502 dme-miR-985 31589 dx acgGGCU--GGUAACCU-UGUAAAc :||| || ||| | |||||| uuaUCGAAUCCCUUGCAUACAUUUg 2 20 865 889 [dm3:X:6432276-6432300:+] 0.5229 126 6 -16.15 -0.7948 MIMAT0005502 dme-miR-985 31589 dx acgggcugguaaccuUGUAAAc |||||| cauauauaauacaguACAUUUa 2 8 1140 1161 [dm3:X:6432551-6432572:+] 0.5046 120 6 -4.37 -0.1360 MIMAT0005509 dme-miR-991 31589 dx ugaaAGGUUUGAU--GUUGAAAuu |:||||: | :|||||| auagUUCAAAUAAAGUAACUUUca 3 19 1165 1188 [dm3:X:6432576-6432599:+] 0.5046 137 0 -8.72 -0.1643 MIMAT0005021 dme-miR-1008 31589 dx acauuuguguuuUUCGACACu |||||||| ccauucgagugcAAGCUGUGc 2 10 430 450 [dm3:X:6431841-6431861:+] 0.4721 145 7 -13.50 -0.1360 MIMAT0005022 dme-miR-1009 31589 dx gaCUUUACAUUGUUA-AAAACUCu |:| | ||:|:| ||||||| uaGGAUUAAAAUAGUAUUUUGAGa 2 22 594 617 [dm3:X:6432005-6432028:+] 0.4721 160 7 -13.47 -1.0618 MIMAT0011784 dme-miR-2279* 31589 dx uuAAAGUGUGUGUCUAUAA-AUu |||: :|:| | ||||| || uuUUUUUUAUAGAUAUAUUGUAa 2 21 154 176 [dm3:X:6431565-6431587:+] 0.5412 128 0 -8.16 -0.9649 MIMAT0011791 dme-miR-2283 31589 dx uaacAGCAUAAG-UAC--UAUAAAAg |||| | | ||| ||||||| auccUCGUUUACUAUGAUAUAUUUUu 2 20 133 158 [dm3:X:6431544-6431569:+] 0.5412 157 7 -11.48 -1.0961 MIMAT0011791 dme-miR-2283 31589 dx uaacagcaUAAGUA---CUAUAAAAg || ||| ||||||| auacauacAUACAUAAACAUAUUUUa 2 16 800 825 [dm3:X:6432211-6432236:+] 0.5229 142 7 -3.64 -0.9864 MIMAT0012196 dme-miR-2489 31589 dx ugacguuUAUGUUGUA-UGUUAu ||||:|||| ||||| cauagccAUACGACAUAACAAUa 2 16 835 857 [dm3:X:6432246-6432268:+] 0.5229 135 0 -17.21 -1.1457 MIMAT0012196 dme-miR-2489 31589 dx ugaCGUUUAUGUUGUAUGU-UAu ||| |||| |:||||| || uacGCAUAUAC-AUAUACAUAUa 2 20 775 796 [dm3:X:6432186-6432207:+] 0.5229 133 0 -14.81 -1.1598 MIMAT0012198 dme-miR-2491 31589 dx ucgUUGACGUUUCCGUUGUCGc ||| :||| ||||||| ucgAACCCUAAA-ACAACAGCa 2 20 192 212 [dm3:X:6431603-6431623:+] 0.5412 153 7 -12.24 -0.9416 MIMAT0012209 dme-miR-2497 31589 dx gaCGUUUGU-AAC-AUUU-ACAACa ||| ||| ||| |:|| ||||| uuGCAUACAUUUGAUGAAUUGUUGc 2 21 877 901 [dm3:X:6432288-6432312:+] 0.5229 134 0 -15.89 -0.8063 MIMAT0012212 dme-miR-2499* 31589 dx cgUAACGCGACUGCAGAUGCGUGc ||| ||: |: | ||||||| caAUU-CGU--AUUUGUACGCACa 2 23 250 270 [dm3:X:6431661-6431681:+] 0.5412 149 7 -13.88 -0.7819 MIMAT0012212 dme-miR-2499* 31589 dx cguaacgcgacugcaGAUGCGUGc :||||||: cagccagauauuccaUUACGCAUa 2 10 759 782 [dm3:X:6432170-6432193:+] 0.5229 125 0 -10.91 -0.1064 MIMAT0000110 dme-miR-5 31589 dx guaUAGUGUUGCUAGC-AAGGAAa ||::|||: :| | |||||| acaAUUGCAAUUGUAGCUUCCUUu 2 21 217 240 [dm3:X:6431628-6431651:+] 0.5412 132 6 -12.72 -0.2808 MIMAT0012531 dme-miR-10-3p 31589 dx uuUGGAGAGA-UCUUGGCUUAAAc |:|||||| :| :||||||| ccAUCUCUCUCGGUUUCGAAUUUg 2 22 524 547 [dm3:X:6431935-6431958:+] 0.4721 168 7 -26.75 -0.4652 MIMAT0012531 dme-miR-10-3p 31589 dx uuUGGAGAGA-U-CUUGGCUUAAAc |:||||:| | | ||||||| uaAUCUCUUUCAUUCAGCGAAUUUg 2 22 672 696 [dm3:X:6432083-6432107:+] 0.5229 155 7 -19.94 -0.4629 MIMAT0000334 dme-miR-92a 31589 dx uauccGGCCCUGUUCACGUUAc :| | ::: ||||||| uaaucUCAGUGUGUGUGCAAUc 2 18 114 135 [dm3:X:6431525-6431546:+] 0.5412 145 7 -7.56 -0.5607 MIMAT0000339 dme-miR-278 31589 dx uuUGCCUGCUUUCAGGGUGGCu || || | ||||||| caACCAACCACCCACCCACCGa 2 21 44 65 [dm3:X:6431455-6431476:+] 0.4870 144 7 -18.38 -0.5036 MIMAT0000355 dme-miR-210 31589 dx aucGGCGACAGUGUGCGUGUu :||: |:::||||||| aauUCGUAUUUGUACGCACAu 2 19 251 271 [dm3:X:6431662-6431682:+] 0.5412 154 7 -17.21 -0.6709 MIMAT0000358 dme-miR-92b 31589 dx cguccGGCCCUGAUCACGUUAa :| | :: ||||||| uaaucUCAGUGUGUGUGCAAUc 2 18 114 135 [dm3:X:6431525-6431546:+] 0.5412 141 7 -10.67 -0.5607 MIMAT0000362 dme-miR-263b 31589 dx caCUUAAGAGGGUCACGGUUc ||:| | | ||||||| ucGAGUGCAAGCUGUGCCAAa 2 20 434 454 [dm3:X:6431845-6431865:+] 0.4721 151 7 -13.17 -0.5054 MIMAT0000402 dme-miR-310 31589 dx uuuccGGCCCUUCACACGUUAu :| | : ||||||||| uaaucUCAGUGUGUGUGCAAUc 2 18 114 135 [dm3:X:6431525-6431546:+] 0.5412 153 7 -12.42 -0.5607 MIMAT0000403 dme-miR-311 31589 dx aguccGGCCACUUACACGUUAu :| ||| :|||||||| uaaucUCAGUGUGUGUGCAAUc 2 18 114 135 [dm3:X:6431525-6431546:+] 0.5412 161 7 -15.20 -0.5535 MIMAT0000404 dme-miR-312 31589 dx aguccGGCAGAGUUCACGUUAu | || | : ||||||| aaucuCAGUGU-GUGUGCAAUc 2 18 115 135 [dm3:X:6431526-6431546:+] 0.5412 143 7 -13.52 -0.5571 MIMAT0000405 dme-miR-313 31589 dx agcccGACACUUUUCACGUUAu | ||| : ||||||| aaucuCAGUG-UGUGUGCAAUc 2 18 115 135 [dm3:X:6431526-6431546:+] 0.5412 143 7 -12.49 -0.5500 MIMAT0000409 dme-miR-317 31589 dx ugACCUAUGGUGGUCGACA-CAAGu | | || : :|||||| |||| guUAGUUAGUUGUAGCUGUAGUUCc 2 23 316 340 [dm3:X:6431727-6431751:+] 0.5724 126 0 -14.55 -0.6308 MIMAT0005467 dme-miR-190 31589 dx guUGGUUCUUAUA-GU-U-UGUAUAga |::| | |||| || | |||||| ccAUUACGCAUAUACAUAUACAUAUac 3 23 771 797 [dm3:X:6432182-6432208:+] 0.5229 139 0 -7.92 -0.1250 MIMAT0005470 dme-miR-957 31589 dx cgGAGUCAAAACCUGCCAAAGu ||| | | ||||||| cuCUCCAUCUCUCUCGGUUUCg 2 21 520 541 [dm3:X:6431931-6431952:+] 0.4721 144 7 -16.29 -0.5332 MIMAT0005504 dme-miR-987 31589 dx guAGUUAGGU--CUGAUAAAUGAAAu || ||:|: | : | ||||||| cuUCCAUUCGUCGUUAAGUUACUUUc 2 23 84 109 [dm3:X:6431495-6431520:+] 0.5141 153 7 -9.76 -0.4740 MIMAT0005520 dme-miR-1000 31589 dx ugacgacaCUGUCCUGUUAUa |||| |||||| agccauacGACAUAACAAUAa 2 14 838 858 [dm3:X:6432249-6432269:+] 0.5229 125 6 -9.15 -0.1577 MIMAT0005019 dme-miR-1006 31589 dx gauacuuauucuuuAGCUUAAAu |||||||| caucucucucgguuUCGAAUUUg 2 10 525 547 [dm3:X:6431936-6431958:+] 0.4721 145 7 -10.97 -0.4786 MIMAT0005019 dme-miR-1006 31589 dx gauacuuauucuuUAGCUUAAAu | ||||||| aucucuuucauucAGCGAAUUUg 2 11 674 696 [dm3:X:6432085-6432107:+] 0.5229 142 7 -8.84 -0.4663 MIMAT0005020 dme-miR-1007 31589 dx acguuUGUCAA--UUAAC-UCGAAu ||| || ||||| ||||| aaaccACAAUUGCAAUUGUAGCUUc 2 18 212 236 [dm3:X:6431623-6431647:+] 0.5412 128 0 -9.00 -0.6249 MIMAT0005027 dme-miR-1014 31589 dx gacGUUUACUUUUACUUAAAa ||:|| | :||||||| cauCAGAUCCAUGUGAAUUUu 2 19 555 575 [dm3:X:6431966-6431986:+] 0.4721 158 7 -10.81 -0.3227

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dx RAID00453577 dme-miR-1007-3p miRNA MIMAT0005020 dx mRNA 31589 Prediction 0.1828 dx RAID00564717 dme-miR-1014-3p miRNA MIMAT0005027 dx mRNA 31589 Prediction 0.2202 dx RAID00610075 dme-miR-210-3p miRNA MIMAT0000355 dx mRNA 31589 Prediction 0.1828 dx RAID00742179 dme-miR-313-3p miRNA MIMAT0000405 dx mRNA 31589 Prediction 0.2202 dx RAID00910830 dme-miR-92a-3p miRNA MIMAT0000334 dx mRNA 31589 Prediction 0.2202 dx RAID00964145 dme-miR-278-3p miRNA MIMAT0000339 dx mRNA 31589 Prediction 0.2202 dx RAID01022221 dme-miR-310-3p miRNA MIMAT0000402 dx mRNA 31589 Prediction 0.2202 dx RAID01089629 dme-miR-986-5p miRNA MIMAT0005503 dx mRNA 31589 Prediction 0.1828 dx RAID01123331 dme-miR-958-3p miRNA MIMAT0005471 dx mRNA 31589 Prediction 0.2202 dx RAID01147214 dme-miR-263b-5p miRNA MIMAT0000362 dx mRNA 31589 Prediction 0.2381 dx RAID01595478 dme-miR-1009-3p miRNA MIMAT0005022 dx mRNA 31589 Prediction 0.1828 dx RAID02104869 dme-miR-1006-3p miRNA MIMAT0005019 dx mRNA 31589 Prediction 0.2202 dx RAID02182229 dme-miR-312-3p miRNA MIMAT0000404 dx mRNA 31589 Prediction 0.2202 dx RAID02297977 dme-miR-5-5p miRNA MIMAT0000110 dx mRNA 31589 Prediction 0.1828 dx RAID02430674 dme-miR-277-3p miRNA MIMAT0000338 dx mRNA 31589 Prediction 0.1828 dx RAID02575774 dme-miR-957-3p miRNA MIMAT0005470 dx mRNA 31589 Prediction 0.2202 dx RAID03041196 dme-miR-317-3p miRNA MIMAT0000409 dx mRNA 31589 Prediction 0.1828 dx RAID03051115 dme-miR-1008-3p miRNA MIMAT0005021 dx mRNA 31589 Prediction 0.1828 dx RAID03076862 dme-miR-1000-5p miRNA MIMAT0005520 dx mRNA 31589 Prediction 0.2202 dx RAID03232589 dme-miR-10-3p miRNA MIMAT0012531 dx mRNA 31589 Prediction 0.1828 dx RAID03305800 dme-miR-8-3p miRNA MIMAT0000113 dx mRNA 31589 Prediction 0.2381 dx RAID03446438 dme-miR-7-5p miRNA MIMAT0000112 dx mRNA 31589 Prediction 0.2202 dx RAID03456134 dme-miR-190-5p miRNA MIMAT0005467 dx mRNA 31589 Prediction 0.1828 dx RAID03518947 dme-miR-308-3p miRNA MIMAT0000399 dx mRNA 31589 Prediction 0.1828 dx RAID03548272 dme-miR-973-5p miRNA MIMAT0005489 dx mRNA 31589 Prediction 0.1828 dx RAID03641269 dme-miR-311-3p miRNA MIMAT0000403 dx mRNA 31589 Prediction 0.2202 dx RAID03687400 dme-miR-987-5p miRNA MIMAT0005504 dx mRNA 31589 Prediction 0.2202 dx RAID03687411 dme-miR-92b-3p miRNA MIMAT0000358 dx mRNA 31589 Prediction 0.2381 dx RAID03864323 dme-miR-985-3p miRNA MIMAT0005502 dx mRNA 31589 Prediction 0.1828