DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 44811 E(bx) ugGUCAUGGACUACAUUAUG-AGu ::|| :|| | ||||||| || uuUGGUUUCUUA-GUAAUACAUCg 2 22 642 664 [dm3:3L:238376-238398:-] 0.6260 127 0 -13.24 -1.1816 MIMAT0000343 dme-miR-280 44811 E(bx) auaguaaaguauacguugcaUUUAUGu |||||| cacaggagcucgauauuuaaAAAUACa 2 8 371 397 [dm3:3L:238643-238669:-] 0.4638 120 6 -7.51 -0.1123 MIMAT0000363 dme-miR-288 44811 E(bx) guACUUUACUUUAGCUGUACUUu || | | ||| ||||||| guUGUAUUUUAAUGAACAUGAAu 2 22 207 229 [dm3:3L:238811-238833:-] 0.4823 157 7 -9.19 -0.9132 MIMAT0000364 dme-miR-289 44811 E(bx) ucAGCGUCCGAGGUG-AAUUUAUAAAu || :| |: :|| | :||||||| uuUCUUA-GUAAUACAUCGAAUAUUUg 2 25 647 672 [dm3:3L:238368-238393:-] 0.6260 149 7 -8.81 -0.8106 MIMAT0000364 dme-miR-289 44811 E(bx) ucagcguccgaggugaauuUAUAAAu |||||| auaauuacuuaaauaugucAUAUUUa 2 8 407 432 [dm3:3L:238608-238633:-] 0.4452 120 6 -9.72 -0.2061 MIMAT0005488 dme-miR-972 44811 E(bx) cggaUUUAUAAGCA--UAACAUgu :||||||:|| |||||| caucGAAUAUUUGUAAAUUGUAaa 3 19 660 683 [dm3:3L:238357-238380:-] 0.6260 149 0 -14.14 -0.1016 MIMAT0005509 dme-miR-991 44811 E(bx) ugaaagguuugaUGUUGAAAUu | ||||||| uaauagcccuugAAAACUUUAg 2 11 5 26 [dm3:3L:234273-234294:-] 0.4028 142 7 -8.60 -0.1481 MIMAT0005509 dme-miR-991 44811 E(bx) ugaaAGGUUUGAUGUUGAA-AUu | :|||| |:||||| || aagcUGUAAACAAUAACUUAUAg 2 19 266 288 [dm3:3L:238752-238774:-] 0.4823 130 0 -11.30 -0.8993 MIMAT0011784 dme-miR-2279* 44811 E(bx) uuaAAGUGUGUGUC---UAUAAAUu | :|||:|: | ||||||| uuaUGUACAUAUUGACCAUAUUUAg 2 20 161 185 [dm3:3L:234114-234138:-] 0.3557 150 7 -10.29 -0.1837 MIMAT0011784 dme-miR-2279* 44811 E(bx) uuaaagUGUGUGUCUAUAAAUu | ||||| ||| ||| caauaaAAACACAUAUAAUUAa 2 17 129 150 [dm3:3L:234149-234170:-] 0.4040 132 0 -8.45 -0.1029 MIMAT0011784 dme-miR-2279* 44811 E(bx) uuaAAGUGUGU-----GUCUAUAAAUu | |||||| : |||||||| uucUCCACACAGGAGCUCGAUAUUUAa 2 20 364 390 [dm3:3L:238650-238676:-] 0.4638 150 7 -15.60 -0.5580 MIMAT0011784 dme-miR-2279* 44811 E(bx) uuaaAGUGUGUGU-CUAUAAAUu |:| |:|:: ||||||| uuacUUAAAUAUGUCAUAUUUAu 2 19 411 433 [dm3:3L:238607-238629:-] 0.4452 149 7 -3.09 -0.8308 MIMAT0011784 dme-miR-2279* 44811 E(bx) uuaaAGUGUGU-GUCUAUAAAUu | |:||| |: ||||||: uuagUAAUACAUCGAAUAUUUGu 2 19 651 673 [dm3:3L:238367-238389:-] 0.6260 141 0 -10.39 -0.1151 MIMAT0011787 dme-miR-2280* 44811 E(bx) agucaaucgaaccUUCAUUUAa |||||||| ccuuauuaaauauAAGUAAAUa 2 10 489 510 [dm3:3L:238530-238551:-] 0.4452 145 7 -4.98 -1.1703 MIMAT0011787 dme-miR-2280* 44811 E(bx) agucaaucgaaccuuCAUUUAa |||||| auacaucgaauauuuGUAAAUu 2 8 657 678 [dm3:3L:238362-238383:-] 0.6260 120 6 -3.46 -0.1312 MIMAT0011791 dme-miR-2283 44811 E(bx) uaacAGCA-UAAGUA-C-UAUAAAag | || || ||| | |||||| uucuUAGUAAUACAUCGAAUAUUUgu 3 20 648 673 [dm3:3L:238367-238392:-] 0.6260 132 0 -3.67 -0.1186 MIMAT0012199 dme-miR-2492 44811 E(bx) aaacuuucgagagcugUUUUGUa |||||| acauauauuaucaauaAAAACAc 2 8 118 140 [dm3:3L:234159-234181:-] 0.4040 120 6 -2.96 -0.3067 MIMAT0012215 dme-miR-2500 44811 E(bx) gacUCCAGGUG-U-GUGUUUUAgg ||| ::|| | ::|||||| ccaAGGCUUACUAUUGCAAAAUaa 3 20 325 348 [dm3:3L:238692-238715:-] 0.4823 133 0 -11.54 -0.1003 MIMAT0000105 dme-miR-1 44811 E(bx) gaGGUAUGAAGAAAUGUAAGGu || |:|| | |||||||| uuCCUAAUUUGUAUACAUUCCu 2 21 244 265 [dm3:3L:238775-238796:-] 0.4823 164 7 -17.04 -1.0033 MIMAT0012531 dme-miR-10-3p 44811 E(bx) uuuGGAGAGAUCUUG-GCU-UAAAc || | | :||:| ||| |||| ucuCCACACAGGAGCUCGAUAUUUa 2 21 365 389 [dm3:3L:238651-238675:-] 0.4638 123 0 -10.44 -0.8431 MIMAT0000334 dme-miR-92a 44811 E(bx) uauccggcccuguucACGUUAc |||||| uuguaaagcgcauuuUGCAAUa 2 8 677 698 [dm3:3L:238342-238363:-] 0.6260 120 6 -5.78 -0.1819 MIMAT0000338 dme-miR-277 44811 E(bx) acagCAUGGU-CUAUC-ACGUAAAu | ||:: || :| ||||||| aacaGGACUGUGAGGGUUGCAUUUg 2 20 38 62 [dm3:3L:238978-239002:-] 0.4680 149 7 -13.44 -0.1782 MIMAT0000347 dme-miR-283 44811 E(bx) ucuuaauggUCGA-CUAUAAAu |||| ||||||| ccacacaggAGCUCGAUAUUUa 2 13 368 389 [dm3:3L:238651-238672:-] 0.4638 151 7 -12.08 -0.6539 MIMAT0000347 dme-miR-283 44811 E(bx) ucUUAAUG-GUCGACUAUAAAu |:| |: || | |||||| uuAGUAAUACAUCGAAUAUUUg 2 20 651 672 [dm3:3L:238368-238389:-] 0.6260 122 6 -6.00 -0.1128 MIMAT0000347 dme-miR-283 44811 E(bx) ucuuaauggucgacUAUAAAu |||||| uacuuaaauaugucAUAUUUa 2 8 412 432 [dm3:3L:238608-238628:-] 0.4452 120 6 -3.63 -0.2061 MIMAT0000352 dme-miR-79 44811 E(bx) uacGAAACCA--UUAGAUCGAAAu ||||| | :|| ||||||| caaCUUUGCUCCGAU-UAGCUUUu 2 20 604 626 [dm3:3L:238414-238436:-] 0.5830 156 7 -13.37 -0.6326 MIMAT0000358 dme-miR-92b 44811 E(bx) cguccggcccugaucACGUUAa |||||| uuguaaagcgcauuuUGCAAUa 2 8 677 698 [dm3:3L:238342-238363:-] 0.6260 120 6 -6.18 -0.1819 MIMAT0000389 dme-miR-31b 44811 E(bx) gucGAUAAGGCUGUAGAACGGu | ||| : ||||||| cucCGAUUAGCUUUUCUUGCCu 2 20 612 633 [dm3:3L:238407-238428:-] 0.6045 143 7 -17.47 -0.8392 MIMAT0000400 dme-miR-31a 44811 E(bx) agucgauacggcuguAGAACGGu ||||||| gcuccgauuagcuuuUCUUGCCu 2 9 611 633 [dm3:3L:238407-238429:-] 0.6045 140 7 -17.03 -0.8427 MIMAT0000402 dme-miR-310 44811 E(bx) uuuccggcccuucacACGUUAu |||||| uuguaaagcgcauuuUGCAAUa 2 8 677 698 [dm3:3L:238342-238363:-] 0.6260 120 6 -8.92 -0.1819 MIMAT0000403 dme-miR-311 44811 E(bx) aguccggccacuuacACGUUAu |||||| uuguaaagcgcauuuUGCAAUa 2 8 677 698 [dm3:3L:238342-238363:-] 0.6260 120 6 -7.71 -0.1819 MIMAT0000404 dme-miR-312 44811 E(bx) aguccggcagaguucACGUUAu |||||| uuguaaagcgcauuuUGCAAUa 2 8 677 698 [dm3:3L:238342-238363:-] 0.6260 120 6 -8.91 -0.1802 MIMAT0000405 dme-miR-313 44811 E(bx) agcccgacacuuuucACGUUAu |||||| uuguaaagcgcauuuUGCAAUa 2 8 677 698 [dm3:3L:238342-238363:-] 0.6260 120 6 -8.19 -0.1819 MIMAT0000406 dme-miR-314 44811 E(bx) ggcuugaauaaccgAGCUUAu |||||| uucuuaguaauacaUCGAAUa 2 8 648 668 [dm3:3L:238372-238392:-] 0.6260 120 6 -10.38 -0.2587 MIMAT0000407 dme-miR-315 44811 E(bx) cgaAAGACUCGUUGUUAGUUUu |||| | : ||||||| guaUUCUUAUUUUGAAUCAAAu 2 20 87 108 [dm3:3L:234191-234212:-] 0.4040 151 7 -6.32 -0.7964 MIMAT0000408 dme-miR-316 44811 E(bx) gcggUCAU-UCGCCUUUUUCUGu | || ||: | |||||| aaugAUUAUAGUUUAUAAAGACa 2 19 31 53 [dm3:3L:234246-234268:-] 0.4028 121 6 -11.51 -0.1310 MIMAT0005467 dme-miR-190 44811 E(bx) guuGGUUCUUAUA-GUUUGUAUAga | || : ||| :|||||||| aauCAAAUGUUAUAUAAACAUAUau 3 22 101 125 [dm3:3L:234174-234198:-] 0.4040 144 0 -11.54 -0.1455 MIMAT0005467 dme-miR-190 44811 E(bx) guUGGUUCUUAUAGUU-UGUAUAga |::| |||| || |||||| auAUUAUCAAUAAAAACACAUAUaa 3 23 122 146 [dm3:3L:234153-234177:-] 0.4040 141 0 -6.74 -0.2740 MIMAT0005476 dme-miR-962 44811 E(bx) cuGUCGUAGUU--AAAGAGAUGGAAUa :||| | || | | ||||||| uuUAGCCUAAAAGUGUGAAUACCUUAu 2 24 468 494 [dm3:3L:238546-238572:-] 0.4452 150 7 -13.40 -0.9726 MIMAT0005483 dme-miR-1002 44811 E(bx) agcgggaaacauaggUGAUGAAUu |:|||||| acaugauaccgaauaAUUACUUAa 2 10 395 418 [dm3:3L:238622-238645:-] 0.4452 129 6 -11.13 -0.2331 MIMAT0005492 dme-miR-976 44811 E(bx) cgUAACU-ACUAUUGAUUAGGUu ||| | | | | ||||||| uuAUUAACUUAACAAUAAUCCAg 2 21 540 562 [dm3:3L:238478-238500:-] 0.5141 151 7 -10.16 -0.8735 MIMAT0005497 dme-miR-981 44811 E(bx) acguCCAAAGCAGC----UGUUGCUu |||||| | | ||| ||| auuuGGUUUCUUAGUAAUACAUCGAa 2 19 641 666 [dm3:3L:238374-238399:-] 0.6260 121 0 -13.40 -0.1363 MIMAT0005501 dme-miR-927 44811 E(bx) ccAUUUCGCAUCCUUAA-GAUUu ||| :||| ||| |||| ccUAAUUUGUAUACAUUCCUAAg 2 21 246 268 [dm3:3L:238772-238794:-] 0.4823 120 0 -5.76 -0.8431 MIMAT0005504 dme-miR-987 44811 E(bx) guaGUUAGGUCUGAUAAAUGAAau ::|| | || || |||||| acaUGAUACCGAAUAAUUACUUaa 3 22 395 418 [dm3:3L:238622-238645:-] 0.4452 145 0 -10.09 -0.1962 MIMAT0005507 dme-miR-137 44811 E(bx) gaugcacAUAAG-AGUUCGUUAu ||||| |||||||| aaauaauUAUUCAACAAGCAAUu 2 16 343 365 [dm3:3L:238675-238697:-] 0.4823 158 7 -12.21 -0.5289 MIMAT0005516 dme-miR-252 44811 E(bx) gaggACGCCGUGAUCAUGAAUc | | | |: | |||||| augaUACCGAAUAAUUACUUAa 2 19 397 418 [dm3:3L:238622-238643:-] 0.4452 122 6 -5.10 -0.2331 MIMAT0005016 dme-miR-1003 44811 E(bx) gaCACUUAUACAUUUA-CACUCu || ||||| || || ||||| aaGUAAAUAU-UACAUAGUGAGu 2 21 502 523 [dm3:3L:238517-238538:-] 0.4452 134 0 -10.13 -0.6068 MIMAT0005019 dme-miR-1006 44811 E(bx) gauacuUAUUCUUUAGCU-UAAAu | |:||: |||| |||| cuccacACAGGAGCUCGAUAUUUa 2 18 366 389 [dm3:3L:238651-238674:-] 0.4638 125 0 -11.10 -0.8360

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score E(bx) RAID00245282 dme-miR-316-5p miRNA MIMAT0000408 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID00307001 dme-miR-92a-3p miRNA MIMAT0000334 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID00364243 dme-miR-10-3p miRNA MIMAT0012531 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID00373305 dme-miR-987-5p miRNA MIMAT0005504 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID00445006 dme-miR-1003-3p miRNA MIMAT0005016 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID00645626 dme-miR-932-5p miRNA MIMAT0005479 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID00661352 dme-miR-252-5p miRNA MIMAT0005516 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID01139542 dme-miR-311-3p miRNA MIMAT0000403 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID01190697 dme-miR-283-5p miRNA MIMAT0000347 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID01552081 dme-miR-190-5p miRNA MIMAT0005467 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID01552353 dme-miR-313-3p miRNA MIMAT0000405 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID01579587 dme-miR-976-3p miRNA MIMAT0005492 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID01612090 dme-miR-303-5p miRNA MIMAT0000388 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID01614413 dme-miR-31b-5p miRNA MIMAT0000389 E(bx) mRNA 44811 Prediction 0.2381 E(bx) RAID01619709 dme-miR-92b-3p miRNA MIMAT0000358 E(bx) mRNA 44811 Prediction 0.2381 E(bx) RAID01925588 dme-miR-305-5p miRNA MIMAT0000391 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID02017823 dme-miR-31a-5p miRNA MIMAT0000400 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID02073044 dme-miR-315-5p miRNA MIMAT0000407 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID02183335 dme-miR-137-3p miRNA MIMAT0005507 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID02252144 dme-miR-1002-5p miRNA MIMAT0005483 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID02475765 dme-miR-1000-5p miRNA MIMAT0005520 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID02965497 dme-miR-310-3p miRNA MIMAT0000402 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID03042230 dme-miR-282-5p miRNA MIMAT0000346 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID03064701 dme-miR-1006-3p miRNA MIMAT0005019 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID03259714 dme-miR-8-3p miRNA MIMAT0000113 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID03311805 dme-miR-284-3p miRNA MIMAT0000348 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID03364452 dme-miR-927-5p miRNA MIMAT0005501 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID03377988 dme-miR-312-3p miRNA MIMAT0000404 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID03489586 dme-miR-277-3p miRNA MIMAT0000338 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID03669281 dme-miR-981-3p miRNA MIMAT0005497 E(bx) mRNA 44811 Prediction 0.1828 E(bx) RAID03792073 dme-miR-314-3p miRNA MIMAT0000406 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID03936819 dme-miR-1-3p miRNA MIMAT0000105 E(bx) mRNA 44811 Prediction 0.2381 E(bx) RAID03994371 dme-miR-962-5p miRNA MIMAT0005476 E(bx) mRNA 44811 Prediction 0.2202 E(bx) RAID04020326 dme-miR-79-3p miRNA MIMAT0000352 E(bx) mRNA 44811 Prediction 0.2202