DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 31339 ec auAGUAAAGUAUACG-UUGCAUUUAUGu |: || | || || ||| ||||||| uuUUUUUACCUAAGCUAAC-UAAAUACg 2 26 619 645 [dm3:X:3751237-3751263:+] 0.5550 166 7 -11.07 -0.7131 MIMAT0000364 dme-miR-289 31339 ec ucAGCGUCCG-AGGUG-AAU--UUAUAAAu |||:| : ::|: ||| ||||||| ugUCGUACUUAAUUAUGUUAAGAAUAUUUu 2 25 810 839 [dm3:X:3751428-3751457:+] 0.4837 145 7 -11.07 -0.6408 MIMAT0000364 dme-miR-289 31339 ec ucagcguccgaggugaauUUAUAAAu ||||||| caagaaugggaagaaaguAAUAUUUc 2 9 992 1017 [dm3:X:3751610-3751635:+] 0.4837 140 7 -5.04 -0.6127 MIMAT0000364 dme-miR-289 31339 ec ucAGCGUCCGAGGU-----GAAUUUAUAAAu ||||| :|||| :||| |||||| acUCGCA-CUUCCAUUUUUUUUACAUAUUUu 2 25 724 753 [dm3:X:3751342-3751371:+] 0.5194 133 6 -16.35 -0.2380 MIMAT0005481 dme-miR-966 31339 ec ggUGUGUCGGGUG-UUGGGUGu || || ||||| ||||||| uaACCCA-CCCACUAACCCACc 2 20 285 305 [dm3:X:3750903-3750923:+] 0.5056 164 7 -24.25 -0.2585 MIMAT0005488 dme-miR-972 31339 ec cggaUUUAUAAGCAUAACAUGu | | | | |||||||| acgcACACAAGCAUAUUGUACa 2 19 343 364 [dm3:X:3750961-3750982:+] 0.5056 150 7 -10.52 -0.7318 MIMAT0005491 dme-miR-975 31339 ec uaUGUCCUACAU--CCUUCACAAau |:| | |||| |||||| gaAUACG-UGUAUUUUUAGUGUUaa 3 22 859 882 [dm3:X:3751477-3751500:+] 0.4837 122 0 -10.73 -0.1523 MIMAT0005495 dme-miR-979 31339 ec aaucggacUCAAGCCCUUCUu || :||||||| cauccacaAGAAUGGGAAGAa 2 14 986 1006 [dm3:X:3751604-3751624:+] 0.4837 145 7 -17.65 -1.1095 MIMAT0005500 dme-miR-984 31339 ec uuUAAGGUUGGCAUAAAUGGAgu |||: |:: | ||||||| uuAUUUACAUU-UUUUUACCUaa 3 22 610 631 [dm3:X:3751228-3751249:+] 0.5550 135 0 -7.58 -0.1481 MIMAT0005502 dme-miR-985 31339 ec acgggcugguaaccuUGUAAAc |||||| caucgaauuuuauuuACAUUUu 2 8 601 622 [dm3:X:3751219-3751240:+] 0.5550 120 6 -8.71 -0.1428 MIMAT0005521 dme-miR-1001 31339 ec acuaggaacccucAAAUGGGu ||||||: uuauuuacauuuuUUUACCUa 2 9 610 630 [dm3:X:3751228-3751248:+] 0.5550 124 0 -8.95 -0.1753 MIMAT0005025 dme-miR-1012 31339 ec gaUACCCCUU--UUAG-AAACUGAUu || || | :||| ||||||| ccAUUGGACAUCGAUCGCUUGACUAa 2 22 500 525 [dm3:X:3751118-3751143:+] 0.5056 147 7 -12.63 -0.3029 MIMAT0011784 dme-miR-2279* 31339 ec uuaaaGUGUGUGUCUAUAA-AUu |||||| : ||||| || acacgCACACAAGCAUAUUGUAc 2 18 341 363 [dm3:X:3750959-3750981:+] 0.5056 129 0 -14.64 -0.2792 MIMAT0011784 dme-miR-2279* 31339 ec uuAAAGUGUGUGUCUAUAAAuu |||: : :|| |||||| caUUUUUUUUAC--AUAUUUuu 3 21 735 754 [dm3:X:3751353-3751372:+] 0.5194 129 0 -6.54 -0.1109 MIMAT0011784 dme-miR-2279* 31339 ec uuAAAG-UGU-GUGU-CUAUAAAUu |||| ||| |: | |||||| ugUUUCGACAUCGAAUUUUAUUUAc 2 21 593 617 [dm3:X:3751211-3751235:+] 0.5550 121 6 -8.10 -0.1690 MIMAT0011786 dme-miR-2280 31339 ec uaUAAAAUAACGG-UUCGAUUcu ||||| || || ||||||| acAUUUUUUUACCUAAGCUAAcu 3 21 616 638 [dm3:X:3751234-3751256:+] 0.5550 155 0 -10.46 -0.1408 MIMAT0011791 dme-miR-2283 31339 ec uaacAGCAUAAGUACUAUAAAAg |: |:|| | ||||||| uuaaUUAUGUUAAGAAUAUUUUu 2 20 818 840 [dm3:X:3751436-3751458:+] 0.4837 155 7 -4.64 -0.7280 MIMAT0011791 dme-miR-2283 31339 ec uaacAGCAUAAGUACUAUAAAAg |: | ||:| ||||||| uccaUUUUUUUUA-CAUAUUUUu 2 20 733 754 [dm3:X:3751351-3751372:+] 0.5194 149 7 -2.58 -1.0580 MIMAT0012200 dme-miR-2493* 31339 ec accGACACACACACACACUCg :| | | | |||||||| gauUUAUUUCUCUGUGUGAGa 2 19 645 665 [dm3:X:3751263-3751283:+] 0.5550 154 7 -12.62 -0.7327 MIMAT0012206 dme-miR-2496* 31339 ec auGCUACCGGAGAGUGUGUGCGUg | ||| :| | :|||||||| gcCAAUGUUCCCAAGCACACGCAc 2 23 325 348 [dm3:X:3750943-3750966:+] 0.5056 162 7 -22.87 -0.1815 MIMAT0012208 dme-miR-2497* 31339 ec uuguugAUGUAAAACGUUACGAAUg |||| | || ||||||| aggaugUACA--UAGC-AUGCUUAc 2 20 114 135 [dm3:X:3750732-3750753:+] 0.5140 150 7 -15.63 -0.2432 MIMAT0000109 dme-miR-4 31339 ec agUUACCAACAGAUCGA-AAUa |:|| | | ||||| ||| uuAGUGUUAAUAUAGCUCUUAc 2 20 873 894 [dm3:X:3751491-3751512:+] 0.4837 123 0 -7.81 -1.1441 MIMAT0012531 dme-miR-10-3p 31339 ec uuuGGAGAGAUCU-UGGCUUAAAc ::| |:| || |:||||||| cuuUUUGUUUCGACAUCGAAUUUu 2 21 588 611 [dm3:X:3751206-3751229:+] 0.5550 159 7 -12.17 -1.0758 MIMAT0000338 dme-miR-277 31339 ec acagcAUGGUCUAUCACGUAAAu | ::: :| ||||||| auauuUUUUGUGUCUUGCAUUUa 2 19 833 855 [dm3:X:3751451-3751473:+] 0.4837 142 7 -12.22 -1.0609 MIMAT0000338 dme-miR-277 31339 ec acagcaUGGUCUAUCACGUAAAu |:||| || |||||| cucuaaAUCAGUUAAGGCAUUUa 2 18 778 800 [dm3:X:3751396-3751418:+] 0.4837 133 6 -14.80 -0.2566 MIMAT0000347 dme-miR-283 31339 ec ucuuaauggucgacUAUAAAu |||||| uccauuuuuuuuacAUAUUUu 2 8 733 753 [dm3:X:3751351-3751371:+] 0.5194 120 6 -1.88 -0.2338 MIMAT0000348 dme-miR-284 31339 ec guuaacGACCUUAGUUCAACGACU-GAAGu :|| || : :|| |:||| |||| agcaguUUGAAACUUGGUCGUUGAGCUUCc 2 24 670 699 [dm3:X:3751288-3751317:+] 0.5550 131 0 -14.66 -0.3649 MIMAT0000354 dme-miR-276b 31339 ec ucUCGUGCCA-UAAUUC-AAGGAu | | :||| :||:|| ||||| gaAACUUGGUCGUUGAGCUUCCUu 2 21 678 701 [dm3:X:3751296-3751319:+] 0.5550 127 0 -17.33 -0.2703 MIMAT0000355 dme-miR-210 31339 ec aucggcgacaGUGUGCGUGUu |||||||||| uguucccaagCACACGCACAc 2 12 330 350 [dm3:X:3750948-3750968:+] 0.5056 155 7 -20.92 -0.1936 MIMAT0000355 dme-miR-210 31339 ec aucgGCGACAGUGUG-CGUGUu |||| |: || ||||| gcaaCGCUUACGAACUGCACAg 2 18 464 485 [dm3:X:3751082-3751103:+] 0.5056 121 0 -18.19 -0.1048 MIMAT0000362 dme-miR-263b 31339 ec cacUUAAGAGGGU-CA-CGGUUc ||| || ||| || ||||| uaaAAUGCUGCCACGUCGCCAAu 2 19 79 101 [dm3:X:3750697-3750719:+] 0.5045 129 0 -14.79 -0.1218 MIMAT0005467 dme-miR-190 31339 ec guUGGUUCU-UAUAGUUUGUAUAga :::|| | | || |||||| guGUUAAUAUAGCUCUUACAUAUaa 3 23 876 900 [dm3:X:3751494-3751518:+] 0.4837 129 0 -6.40 -0.1339 MIMAT0005467 dme-miR-190 31339 ec guugguucuuAUAGUUUGUAUAGa | |: ||||||: cacuuccauuUUUUUUACAUAUUu 2 15 729 752 [dm3:X:3751347-3751370:+] 0.5194 126 0 -10.03 -0.1760 MIMAT0005483 dme-miR-1002 31339 ec agcgGGAAACAUAGGUG-AUGAAUu ::|||||||: | |||||| uuuaUUUUUGUAUUGUCGUACUUAa 2 21 797 821 [dm3:X:3751415-3751439:+] 0.4837 136 6 -15.89 -0.9755 MIMAT0005492 dme-miR-976 31339 ec cgUAACUACU--AUUGAUU-AGGUu || ||| : |:||||| |||| acAUCGAUCGCUUGACUAACUCCAc 2 21 507 531 [dm3:X:3751125-3751149:+] 0.5056 127 0 -14.33 -0.6980 MIMAT0005497 dme-miR-981 31339 ec acGUCCAAAGCAGCUGUUGCUu ||| | :| ||||||| ugCAGCAUAUG--AACAACGAa 2 21 951 970 [dm3:X:3751569-3751588:+] 0.4837 141 7 -16.70 -1.0469 MIMAT0005501 dme-miR-927 31339 ec ccaUUUCGCAUCCUUAAGAUUu |:| ||| | |||||| ggaAGAAAGUAAUAUUUCUAAa 2 20 1000 1021 [dm3:X:3751618-3751639:+] 0.4837 127 6 -10.04 -0.1704 MIMAT0005504 dme-miR-987 31339 ec guaGUUAGGUCUGAUAAAUGAAAu :|||:: | | |||||| | guaUAAUUUUUAAU-UUUACUCUa 2 22 760 782 [dm3:X:3751378-3751400:+] 0.4837 123 0 -6.13 -0.1250 MIMAT0005516 dme-miR-252 31339 ec gagGACGCCGUGAU--CAUGAAUc :| : |:|:|: ||||||| uuaUUUUUGUAUUGUCGUACUUAa 2 20 798 821 [dm3:X:3751416-3751439:+] 0.4837 146 7 -11.05 -0.8544 MIMAT0005518 dme-miR-998 31339 ec cuCGACUU--A-GAGUAC-CACGAu |:|||: | ||::|| ||||| ucGUUGAGCUUCCUUGUGCGUGCUg 2 20 687 711 [dm3:X:3751305-3751329:+] 0.5550 121 0 -19.18 -0.5873 MIMAT0005016 dme-miR-1003 31339 ec gacacUUAUACAUUUACA-CUCu |||| | |:|||| ||| aacgaAAUAAG-AGAUGUCGAGc 2 18 965 986 [dm3:X:3751583-3751604:+] 0.4837 123 0 -8.97 -0.5789 MIMAT0005017 dme-miR-1004 31339 ec gacaCUCCCUUCACUACA-CUCu || ||| ||||| ||| caacGAAAUAAGAGAUGUCGAGc 2 19 964 986 [dm3:X:3751582-3751604:+] 0.4837 122 0 -10.67 -0.5935 MIMAT0005019 dme-miR-1006 31339 ec gauacuuauuCUUUAGCUUAAAu || ||||||||| uuuuuguuucGACAUCGAAUUUu 2 14 589 611 [dm3:X:3751207-3751229:+] 0.5550 157 7 -10.26 -1.0782 MIMAT0005020 dme-miR-1007 31339 ec acgUUUG-UCAAUUAACUCGAAu |||| | | :|||||||| uugAAACUUGGUCGUUGAGCUUc 2 20 676 698 [dm3:X:3751294-3751316:+] 0.5550 158 7 -12.56 -0.2892 MIMAT0005027 dme-miR-1014 31339 ec gacguuuacuuuuaCUUAAAa |||||| uuuguuucgacaucGAAUUUu 2 8 591 611 [dm3:X:3751209-3751229:+] 0.5550 120 6 -5.01 -0.1043

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ec RAID00206718 dme-miR-276b-3p miRNA MIMAT0000354 ec mRNA 31339 Prediction 0.1828 ec RAID00422159 dme-miR-965-3p miRNA MIMAT0005480 ec mRNA 31339 Prediction 0.1828 ec RAID00746509 dme-miR-1006-3p miRNA MIMAT0005019 ec mRNA 31339 Prediction 0.2202 ec RAID00871871 dme-miR-972-3p miRNA MIMAT0005488 ec mRNA 31339 Prediction 0.1828 ec RAID00880459 dme-miR-927-5p miRNA MIMAT0005501 ec mRNA 31339 Prediction 0.2202 ec RAID01054344 dme-miR-277-3p miRNA MIMAT0000338 ec mRNA 31339 Prediction 0.2381 ec RAID01065760 dme-miR-1003-3p miRNA MIMAT0005016 ec mRNA 31339 Prediction 0.2202 ec RAID01491031 dme-miR-2c-3p miRNA MIMAT0000411 ec mRNA 31339 Prediction 0.1828 ec RAID01718424 dme-miR-966-5p miRNA MIMAT0005481 ec mRNA 31339 Prediction 0.1828 ec RAID01747093 dme-miR-1008-3p miRNA MIMAT0005021 ec mRNA 31339 Prediction 0.1828 ec RAID01804530 dme-miR-1015-3p miRNA MIMAT0005028 ec mRNA 31339 Prediction 0.1828 ec RAID01859013 dme-miR-10-3p miRNA MIMAT0012531 ec mRNA 31339 Prediction 0.1828 ec RAID01908195 dme-miR-981-3p miRNA MIMAT0005497 ec mRNA 31339 Prediction 0.2202 ec RAID02026347 dme-mir-2a-2 miRNA MI0000118 ec mRNA 31339 Prediction 0.1828 ec RAID02067873 dme-miR-1012-3p miRNA MIMAT0005025 ec mRNA 31339 Prediction 0.1828 ec RAID02080027 dme-miR-190-5p miRNA MIMAT0005467 ec mRNA 31339 Prediction 0.1828 ec RAID02086618 dme-miR-284-3p miRNA MIMAT0000348 ec mRNA 31339 Prediction 0.1828 ec RAID02198952 dme-miR-283-5p miRNA MIMAT0000347 ec mRNA 31339 Prediction 0.1828 ec RAID02330638 dme-miR-987-5p miRNA MIMAT0005504 ec mRNA 31339 Prediction 0.1828 ec RAID02690911 dme-miR-979-3p miRNA MIMAT0005495 ec mRNA 31339 Prediction 0.1828 ec RAID02922871 dme-miR-998-3p miRNA MIMAT0005518 ec mRNA 31339 Prediction 0.1828 ec RAID02957231 dme-miR-1002-5p miRNA MIMAT0005483 ec mRNA 31339 Prediction 0.2381 ec RAID02983085 dme-miR-976-3p miRNA MIMAT0005492 ec mRNA 31339 Prediction 0.1828 ec RAID03145250 dme-miR-1007-3p miRNA MIMAT0005020 ec mRNA 31339 Prediction 0.2381 ec RAID03257093 dme-miR-1014-3p miRNA MIMAT0005027 ec mRNA 31339 Prediction 0.1828 ec RAID03364000 dme-miR-210-3p miRNA MIMAT0000355 ec mRNA 31339 Prediction 0.2202 ec RAID03402089 dme-miR-252-5p miRNA MIMAT0005516 ec mRNA 31339 Prediction 0.2381 ec RAID03530775 dme-miR-1011-3p miRNA MIMAT0005024 ec mRNA 31339 Prediction 0.1828 ec RAID03654622 dme-miR-278-3p miRNA MIMAT0000339 ec mRNA 31339 Prediction 0.1828 ec RAID03661098 dme-miR-1004-3p miRNA MIMAT0005017 ec mRNA 31339 Prediction 0.2202 ec RAID03864152 dme-miR-958-3p miRNA MIMAT0005471 ec mRNA 31339 Prediction 0.2202 ec RAID03873299 dme-miR-263b-5p miRNA MIMAT0000362 ec mRNA 31339 Prediction 0.1828 ec RAID03881378 dme-miR-4-3p miRNA MIMAT0000109 ec mRNA 31339 Prediction 0.1828