DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43162 gro auaguaaaGUAUACGUUGCAUUUAUGu || | | |:: ||||||| cagcugaaCAAAAGGAGU-UAAAUACa 2 20 527 552 [dm3:3R:21874854-21874879:+] 0.5142 149 7 -8.20 -0.9792 MIMAT0000343 dme-miR-280 43162 gro auaGUAAAGUAUACGUUGCAUUUAUgu :|| | || | :| : |||||| augUAUAUAAU-UAUAUUAUAAAUAau 3 25 1238 1263 [dm3:3R:21875565-21875590:+] 0.6873 134 0 -5.73 -0.1969 MIMAT0000363 dme-miR-288 43162 gro guacuUUACUUUAGCUGUACUUu ||| | || ||| ||| ucuauAAU-AUAUAUACAAGAAa 2 19 185 206 [dm3:3R:21874512-21874533:+] 0.5942 120 0 -3.20 -0.1018 MIMAT0000364 dme-miR-289 43162 gro ucAGCGUCCGAGGUGAA---UUUAUAAau ||| | :|: |:|| ||||||| cuUCG-AUUUUUAAUUUUACAAAUAUUau 3 25 1193 1220 [dm3:3R:21875520-21875547:+] 0.5872 133 0 -6.83 -0.1486 MIMAT0000364 dme-miR-289 43162 gro ucagcguccgAGGUGA--AUUUAUAAAu || |:| || |||||| agaaaacgaaUCGAUUUAUAUAUAUUUa 2 17 1103 1130 [dm3:3R:21875430-21875457:+] 0.5872 123 6 -12.36 -0.1745 MIMAT0005464 dme-miR-iab-4as-3p 43162 gro auuugcAUAUGACUUACAUAgg ||||: |||||| ugugguUAUAU---AUGUAUau 3 17 1227 1245 [dm3:3R:21875554-21875572:+] 0.6372 124 0 -7.20 -0.1386 MIMAT0005475 dme-miR-961 43162 gro uagagUCAAUGAC-CAC-UAGUUu | | |:|| ||| ||||| gaggaAUUAAUUGUGUGAAUCAAa 2 18 940 963 [dm3:3R:21875267-21875290:+] 0.5872 120 0 -12.13 -0.9524 MIMAT0005489 dme-miR-973 43162 gro uuUUAGCUUCAAGUUGG--UGGUUGgu ||| || | || | |||||| ccAAU--AAAUAAAAACAAACCAACaa 3 24 259 283 [dm3:3R:21874586-21874610:+] 0.5732 127 0 -9.39 -0.1126 MIMAT0005491 dme-miR-975 43162 gro uauguccuacauccuUCACAAAu ||||||| acagcuaaauuguuuAGUGUUUa 2 9 1061 1083 [dm3:3R:21875388-21875410:+] 0.5872 140 7 -13.02 -1.1964 MIMAT0005500 dme-miR-984 43162 gro uuuAAGGUUGGCAUAAAUGGAGu | :||::: | ||||||| aguUGUCAGUU-UCCUUACCUCc 2 21 649 670 [dm3:3R:21874976-21874997:+] 0.5222 146 7 -12.34 -0.1706 MIMAT0005502 dme-miR-985 43162 gro acgggcugguaaccuUGUAAAc |||||| cgaaaaacacaaaacACAUUUg 2 8 716 737 [dm3:3R:21875043-21875064:+] 0.5366 120 6 -9.41 -0.1050 MIMAT0005018 dme-miR-1005 43162 gro gacGCUUAAUUUCUAA-GGUCu :||: | | |||| |||| cguUGAGAUUAUGAUUACCAGc 2 19 509 530 [dm3:3R:21874836-21874857:+] 0.5437 122 0 -13.02 -0.6811 MIMAT0005022 dme-miR-1009 43162 gro gacUUUACAUU----GUUA-AAAACUCu ||:||||| | || ||||||| accAAGUGUAAAAUCCUAUAUUUUGAGc 2 21 978 1005 [dm3:3R:21875305-21875332:+] 0.5872 158 7 -11.51 -0.6225 MIMAT0005022 dme-miR-1009 43162 gro gacuuuacauuguuaaAAACUCu |||||| cuuugcuuguauguaaUUUGAGa 2 8 897 919 [dm3:3R:21875224-21875246:+] 0.5872 120 6 -12.35 -0.1491 MIMAT0011784 dme-miR-2279* 43162 gro uuaaAG-UGUGUGUCUAUAAAUu || |: :|:| ||||||| cgaaUCGAUUUAUAUAUAUUUAc 2 19 1109 1131 [dm3:3R:21875436-21875458:+] 0.5872 153 7 -7.90 -1.1127 MIMAT0011786 dme-miR-2280 43162 gro uauaaaAUAACGGUUCGAUUCu || |:|||||||| agcuacUAAGCCUAAGCUAAGu 2 17 237 258 [dm3:3R:21874564-21874585:+] 0.5732 152 7 -16.24 -0.7204 MIMAT0011791 dme-miR-2283 43162 gro uaacagcaUAAGUACUAUAAAAg | || | ||||||| aaguguaaAAUCCU-AUAUUUUg 2 16 981 1002 [dm3:3R:21875308-21875329:+] 0.5872 145 7 -3.98 -0.3470 MIMAT0011791 dme-miR-2283 43162 gro uaacAGCAUAAGUA-CUAUAAAag ||| |||:|| |||||| cgaaUCG-AUUUAUAUAUAUUUac 3 20 1109 1131 [dm3:3R:21875436-21875458:+] 0.5872 140 0 -8.29 -0.1495 MIMAT0011791 dme-miR-2283 43162 gro uaacaGCAUA-AGUACUAUAAAAg :|||| | || ||||| | auauaUGUAUAUAAUUAUAUUAUa 2 19 1234 1257 [dm3:3R:21875561-21875584:+] 0.6873 129 0 -4.77 -0.2000 MIMAT0012196 dme-miR-2489 43162 gro ugacguUUAUGUUGUAUGUUau ||||: |:|||||| uucuauAAUAU-AUAUACAAga 3 17 184 204 [dm3:3R:21874511-21874531:+] 0.5942 138 0 -9.36 -0.3877 MIMAT0012198 dme-miR-2491 43162 gro ucGUUGACGUUUCCGUUGUCGc |||| |||| ||||||| aaCAACAACAAAAACAACAGCa 2 21 81 102 [dm3:3R:21874408-21874429:+] 0.5167 168 7 -18.80 -1.0477 MIMAT0012198 dme-miR-2491 43162 gro ucGUUGACGUUUCCGU-UGUCGc :|:||| |||| || ||||| uuUAGCUGAAAAGUCAGACAGCg 2 21 602 624 [dm3:3R:21874929-21874951:+] 0.5142 140 0 -22.04 -0.4343 MIMAT0012199 dme-miR-2492 43162 gro aaacuuucgagagcUGUUUUGUa |||||||| aacauacgaaaaacACAAAACAc 2 10 710 732 [dm3:3R:21875037-21875059:+] 0.5366 145 7 -7.57 -0.9633 MIMAT0012199 dme-miR-2492 43162 gro aaacuUUCGAGAGCU--GUUUUGUa || : |:|| ||||||: auuauAAAUAAUUGAAGCAAAACGa 2 19 1252 1276 [dm3:3R:21875579-21875603:+] 0.6873 129 0 -8.65 -0.5676 MIMAT0012199 dme-miR-2492 43162 gro aaacuuucgagagcugUUUUGUa |||||| cuaaguccaauaaauaAAAACAa 2 8 253 275 [dm3:3R:21874580-21874602:+] 0.5732 120 6 -3.10 -0.1364 MIMAT0012199 dme-miR-2492 43162 gro aaacuuucgagagcugUUUUGUa |||||| uagaguauauauaugaAAAACAg 2 8 1082 1104 [dm3:3R:21875409-21875431:+] 0.5872 120 6 -6.04 -0.1160 MIMAT0012201 dme-miR-2493 43162 gro ugcggagcgUGUUUA---UGUGUGcc ||||:| |||||| aacaaaccaACAAGUUGAACACACaa 3 15 271 296 [dm3:3R:21874598-21874623:+] 0.5732 129 0 -13.78 -0.1328 MIMAT0012214 dme-miR-2500* 43162 gro ccaUAACAUAU-ACACAC-AAGGAAUg ||| || : ||| | ||||||| guaAUUUUAAGUUGUCAGUUUCCUUAc 2 23 640 666 [dm3:3R:21874967-21874993:+] 0.5222 156 7 -12.28 -0.1935 MIMAT0012215 dme-miR-2500 43162 gro gacuccaggugugUGUUUUAgg ||||||| uguuguaaaauuaACAAAAUga 3 10 379 400 [dm3:3R:21874706-21874727:+] 0.5732 125 0 -6.14 -0.1134 MIMAT0012217 dme-miR-2501* 43162 gro uuuCUUUCAAACUA-ACGUUCUCa |||| | | || ||||||| ggcGAAAUUGUAAUAAGCAAGAGa 2 21 1153 1176 [dm3:3R:21875480-21875503:+] 0.5872 159 7 -10.92 -1.0696 MIMAT0000332 dme-miR-274 43162 gro uaaugggcaaucacagccaGUGUUUu |||||| aaacacaacauacgaaaaaCACAAAa 2 8 704 729 [dm3:3R:21875031-21875056:+] 0.5366 120 6 -12.21 -0.1074 MIMAT0000338 dme-miR-277 43162 gro acagcauggucuaucaCGUAAAu |||||| ugaauauacuuaguaaGCAUUUu 2 8 779 801 [dm3:3R:21875106-21875128:+] 0.5872 120 6 -7.96 -0.1231 MIMAT0000347 dme-miR-283 43162 gro ucuuaauggucgacUAUAAAu |||||| gaaucgauuuauauAUAUUUa 2 8 1110 1130 [dm3:3R:21875437-21875457:+] 0.5872 120 6 -5.03 -0.1812 MIMAT0000390 dme-miR-304 43162 gro gaGUGUAAAUGUU----UAACUCUAAu ::|| ||:||: :|||||||| auUGCAAUUGCAGGAGCGUUGAGAUUa 2 22 493 519 [dm3:3R:21874820-21874846:+] 0.5732 156 7 -16.75 -0.7435 MIMAT0000407 dme-miR-315 43162 gro cgaaaGACUCGUUGUUAGUUUu :|| |:: ||||||| auuaaUUGUGUG--AAUCAAAc 2 18 945 964 [dm3:3R:21875272-21875291:+] 0.5872 142 7 -5.67 -0.4287 MIMAT0005472 dme-miR-375 43162 gro auUGAAUUCGGUUUGCUUGUUu |:| |||| ||||||| || uaAUUGAAGCAAAACGAAAAAa 2 21 1260 1281 [dm3:3R:21875587-21875608:+] 0.6873 148 0 -14.81 -0.1874 MIMAT0005478 dme-miR-964 43162 gro uucaauucgaggggaUAAGAUu |||||| gaagcaaaaaugaaaAUUCUAu 2 8 168 189 [dm3:3R:21874495-21874516:+] 0.6152 120 6 -4.81 -0.2665 MIMAT0005479 dme-miR-932 43162 gro gaCGUUAC----GUGAUGCCUUAAcu |:|||| |: : |||||| guGUAAUGAGAAAAUCGAGGAAUUaa 3 21 924 949 [dm3:3R:21875251-21875276:+] 0.5872 123 0 -11.77 -0.1048 MIMAT0005483 dme-miR-1002 43162 gro agcgggaaacauaggugAUGAAUu |||||| auaauuauaaaugaauaUACUUAg 2 8 768 791 [dm3:3R:21875095-21875118:+] 0.5872 120 6 -5.97 -0.1891 MIMAT0005501 dme-miR-927 43162 gro ccaUUUCGCAUCCUUAAGAUuu ||| :| | ||||||| gcaAAAAUGAA--AAUUCUAua 3 20 171 190 [dm3:3R:21874498-21874517:+] 0.6152 132 0 -5.24 -0.4043 MIMAT0005506 dme-miR-989 43162 gro caaGGUG-AUGCAGUGU-AGUGu |||| | || ||| |||| aaaCCACUUUCGAAACACUCACu 2 19 835 857 [dm3:3R:21875162-21875184:+] 0.5872 121 0 -19.18 -0.3129 MIMAT0005507 dme-miR-137 43162 gro gaugcacAUAAGAGUUCGUUau || | | |||||| uuauaaaUAAU-UGAAGCAAaa 3 16 1253 1273 [dm3:3R:21875580-21875600:+] 0.6873 125 0 -6.32 -0.3310 MIMAT0005513 dme-miR-994 43162 gro uagugcCGAU-GAUAAAGGAAUc |:|: | :|||||||| uuuuaaGUUGUCAGUUUCCUUAc 2 17 644 666 [dm3:3R:21874971-21874993:+] 0.5222 151 7 -10.64 -0.1972 MIMAT0005516 dme-miR-252 43162 gro gaggacgccgugaucAUGAAUc |||||| aauuauaaaugaauaUACUUAg 2 8 770 791 [dm3:3R:21875097-21875118:+] 0.5872 120 6 -7.70 -0.1963 MIMAT0005519 dme-miR-999 43162 gro ucugugUCAGAAUGUCAAUUgu || || :|||||| uuaguaAGCAUUUUAGUUAAga 3 17 788 809 [dm3:3R:21875115-21875136:+] 0.5872 132 0 -8.14 -0.1725 MIMAT0005016 dme-miR-1003 43162 gro gacACUUAUAC-AUUUACACUCu | |:| || | ||||||| cuuUUAGUUUGUUUUAUGUGAGc 2 20 568 590 [dm3:3R:21874895-21874917:+] 0.5142 150 7 -12.64 -0.5322 MIMAT0005017 dme-miR-1004 43162 gro gacacucccuucACUACACUCu | ||||||| uuuuaguuuguuUUAUGUGAGc 2 11 569 590 [dm3:3R:21874896-21874917:+] 0.5142 142 7 -8.83 -0.5428 MIMAT0005024 dme-miR-1011 43162 gro gacgcucgcuaaacuuGGUUAUu |||||| uaagccuaagcuaaguCCAAUAa 2 8 243 265 [dm3:3R:21874570-21874592:+] 0.5732 120 6 -9.24 -0.1098 MIMAT0005027 dme-miR-1014 43162 gro gacguUUACU-UUUACUUAAAa ||| | |||||||| | uauauAAUUAUAAAUGAAUAUa 2 17 765 786 [dm3:3R:21875092-21875113:+] 0.5872 131 0 -5.46 -0.1251 MIMAT0005027 dme-miR-1014 43162 gro gaCGUUUACUUUUAC-UUAAAa |||| ||||| ||||| auGCAACAACAAAUGUAAUUUu 2 20 626 647 [dm3:3R:21874953-21874974:+] 0.5142 127 0 -10.19 -0.6281

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score gro RAID00054405 dme-miR-989-3p miRNA MIMAT0005506 gro mRNA 43162 Prediction 0.1828 gro RAID00065491 dme-miR-33-5p miRNA MIMAT0000342 gro mRNA 43162 Prediction 0.1828 gro RAID00221673 dme-miR-274-5p miRNA MIMAT0000332 gro mRNA 43162 Prediction 0.1828 gro RAID00355999 dme-miR-1014-3p miRNA MIMAT0005027 gro mRNA 43162 Prediction 0.1828 gro RAID00379751 dme-miR-994-5p miRNA MIMAT0005513 gro mRNA 43162 Prediction 0.2202 gro RAID00478087 dme-miR-375-3p miRNA MIMAT0005472 gro mRNA 43162 Prediction 0.2202 gro RAID00700739 dme-miR-975-5p miRNA MIMAT0005491 gro mRNA 43162 Prediction 0.1828 gro RAID00788132 dme-miR-964-5p miRNA MIMAT0005478 gro mRNA 43162 Prediction 0.1828 gro RAID00968843 dme-miR-283-5p miRNA MIMAT0000347 gro mRNA 43162 Prediction 0.1828 gro RAID01205180 dme-miR-1004-3p miRNA MIMAT0005017 gro mRNA 43162 Prediction 0.2202 gro RAID01272131 dme-miR-1009-3p miRNA MIMAT0005022 gro mRNA 43162 Prediction 0.1828 gro RAID01458453 dme-miR-315-5p miRNA MIMAT0000407 gro mRNA 43162 Prediction 0.2202 gro RAID01535461 dme-miR-277-3p miRNA MIMAT0000338 gro mRNA 43162 Prediction 0.1828 gro RAID01594535 dme-miR-252-5p miRNA MIMAT0005516 gro mRNA 43162 Prediction 0.1828 gro RAID01627261 dme-miR-1003-3p miRNA MIMAT0005016 gro mRNA 43162 Prediction 0.2202 gro RAID01636231 dme-miR-1011-3p miRNA MIMAT0005024 gro mRNA 43162 Prediction 0.2381 gro RAID01812658 dme-miR-999-3p miRNA MIMAT0005519 gro mRNA 43162 Prediction 0.1828 gro RAID01968010 dme-miR-5-5p miRNA MIMAT0000110 gro mRNA 43162 Prediction 0.1828 gro RAID02635932 dme-miR-984-5p miRNA MIMAT0005500 gro mRNA 43162 Prediction 0.1828 gro RAID03027718 dme-miR-932-5p miRNA MIMAT0005479 gro mRNA 43162 Prediction 0.1828 gro RAID03073430 dme-miR-137-3p miRNA MIMAT0005507 gro mRNA 43162 Prediction 0.1828 gro RAID03252569 dme-miR-304-5p miRNA MIMAT0000390 gro mRNA 43162 Prediction 0.2381 gro RAID03845103 dme-miR-980-3p miRNA MIMAT0005496 gro mRNA 43162 Prediction 0.2202 gro RAID03976855 dme-miR-927-5p miRNA MIMAT0005501 gro mRNA 43162 Prediction 0.1828 gro RAID04011371 dme-miR-1002-5p miRNA MIMAT0005483 gro mRNA 43162 Prediction 0.1828