DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 34888 stc auaguaaaGUAUACGUUGCAUUUAUGu |:| |||| | ||||||| ucuggccaCGU-UGCAUC-UAAAUACa 2 20 342 366 [dm3:2L:15117997-15118021:+] 0.5303 155 7 -14.34 -0.7599 MIMAT0000343 dme-miR-280 34888 stc auaGUAAAGUAUACGUUGC----AUUUAUGu |:| | :||| ||: | ||||||: aucCGUGUGGUAUACAGAGAUAUUAAAUAUa 2 25 6 36 [dm3:2L:15117661-15117691:+] 0.4351 139 0 -10.24 -0.1094 MIMAT0000388 dme-miR-303 34888 stc uggucaAAGGAC-ACUUUGGAUUu || :|| | :||||||| gaagacUUAUUGAUUGAACCUAAa 2 18 105 128 [dm3:2L:15117760-15117783:+] 0.4807 152 7 -12.03 -0.8192 MIMAT0011787 dme-miR-2280* 34888 stc agucaaucgaaccUUCAUUUAa :||||||| aggauaaauaaauGAGUAAAUa 2 10 387 408 [dm3:2L:15118042-15118063:+] 0.5303 141 7 -5.62 -1.1212 MIMAT0011787 dme-miR-2280* 34888 stc agucaaucgaaccuuCAUUUAa |||||| uaccacguauauuuuGUAAAUu 2 8 183 204 [dm3:2L:15117838-15117859:+] 0.4807 120 6 -3.91 -0.1104 MIMAT0011791 dme-miR-2283 34888 stc uaACAGCAUAAGUAC-UAUAAAAg || ||| || | ||||||| auUGCCGUUACCACGUAUAUUUUg 2 22 175 198 [dm3:2L:15117830-15117853:+] 0.4807 156 7 -9.78 -0.7359 MIMAT0012209 dme-miR-2497 34888 stc gacGUUUGUAACAUUUACAACa | |: || ||||||||| accCUAGAAUGCUAAAUGUUGa 2 20 223 244 [dm3:2L:15117878-15117899:+] 0.5303 159 7 -10.73 -1.1980 MIMAT0012209 dme-miR-2497 34888 stc gacGUUUGUAACAUUUA-CAACa :|||:|| ||||| |||| uauUAAAUAUAUUAAAUCGUUGg 2 20 26 48 [dm3:2L:15117681-15117703:+] 0.4351 135 0 -9.03 -0.6156 MIMAT0000347 dme-miR-283 34888 stc ucuuaAUG-GUCGACUAUAAau ||: ||| |||||| uguggUAUACAG-AGAUAUUaa 3 17 11 31 [dm3:2L:15117666-15117686:+] 0.4351 125 0 -7.55 -0.2594 MIMAT0005519 dme-miR-999 34888 stc ucugugucagAAUGUCAAUUgu | |:|||||| cgcuggaaaaUAAUAGUUAAaa 3 13 49 70 [dm3:2L:15117704-15117725:+] 0.4579 128 0 -8.32 -0.1122 MIMAT0005520 dme-miR-1000 34888 stc ugACGACACUGUCCUGUUAUa ||| || ||||||||| gaUGCGCUGCGAGGACAAUAc 2 20 145 165 [dm3:2L:15117800-15117820:+] 0.4807 163 7 -17.58 -0.1460 MIMAT0005027 dme-miR-1014 34888 stc gacguuuAC-UUUUACUUAAAa || | :|||||||| aaucuguUGUACGAUGAAUUUa 2 15 304 325 [dm3:2L:15117959-15117980:+] 0.5303 149 7 -9.58 -0.9677

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G123229 stc Drosophila melanogaster 34888

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score stc RAID00531377 dme-miR-34-5p miRNA MIMAT0000350 stc mRNA 34888 Prediction 0.1828 stc RAID02443669 dme-miR-1014-3p miRNA MIMAT0005027 stc mRNA 34888 Prediction 0.2202 stc RAID02773367 dme-miR-219-5p miRNA MIMAT0000335 stc mRNA 34888 Prediction 0.1828 stc RAID03022479 dme-miR-283-5p miRNA MIMAT0000347 stc mRNA 34888 Prediction 0.1828 stc RAID03399099 dme-miR-1000-5p miRNA MIMAT0005520 stc mRNA 34888 Prediction 0.2202 stc RAID03905366 dme-miR-999-3p miRNA MIMAT0005519 stc mRNA 34888 Prediction 0.1828 stc RAID03952415 dme-miR-10-3p miRNA MIMAT0012531 stc mRNA 34888 Prediction 0.1828