DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 48903 l(3)73Ah auaGUAAAGUAUACGUUGCAUUUAUgu || || | | ||:||||||| guaCAAAACACACG-AAUGUAAAUAaa 3 25 318 343 [dm3:3L:16583192-16583217:+] 0.6166 142 0 -9.46 -0.2441 MIMAT0000364 dme-miR-289 48903 l(3)73Ah ucagcguccGAGGUGAAU-UUAUAAAu ||||::||: ||||||| aucaacguuCUCCGUUUGCAAUAUUUu 2 18 243 269 [dm3:3L:16583117-16583143:+] 0.5466 164 7 -19.12 -0.7489 MIMAT0000364 dme-miR-289 48903 l(3)73Ah ucAGCGUCCGAGGUGAA-UUUAUAAAu || || :|: ::|| |||||| | ucUC-CAUUUUUAGUUUGAAAUAUAUa 2 25 274 299 [dm3:3L:16583148-16583173:+] 0.5604 125 0 -12.38 -0.1223 MIMAT0005464 dme-miR-iab-4as-3p 48903 l(3)73Ah auuugcaUAUGACUUACAUAGg ||| | ||||||: guuugaaAUA-UAUAUGUAUUu 2 16 286 306 [dm3:3L:16583160-16583180:+] 0.5604 129 0 -7.03 -0.2420 MIMAT0005488 dme-miR-972 48903 l(3)73Ah cgGAUUUAUAAGCAUAACAUGu :| | ||||: || ||||| uaUUUAUUAUUU-UAAUGUACa 2 21 302 322 [dm3:3L:16583176-16583196:+] 0.5885 130 0 -9.26 -0.1086 MIMAT0005517 dme-miR-997 48903 l(3)73Ah acuuuGAGG--AAGCUCAAACcc |||| ||: |||||| auguuCUCCAUUUUUAGUUUGaa 3 17 270 292 [dm3:3L:16583144-16583166:+] 0.5604 135 0 -11.75 -0.4888 MIMAT0011784 dme-miR-2279* 48903 l(3)73Ah uuaaagUGUGUGUCUAUAAAUu |:|:|:| :|||||| uuugaaAUAUAUAUGUAUUUAu 2 17 287 308 [dm3:3L:16583161-16583182:+] 0.5885 144 6 -8.75 -0.3703 MIMAT0011787 dme-miR-2280* 48903 l(3)73Ah agucaaucgaaccuuCAUUUAa |||||| auuuauugacaaugcGUAAAUa 2 8 45 66 [dm3:3L:16582919-16582940:+] 0.5960 120 6 -1.81 -0.1694 MIMAT0011787 dme-miR-2280* 48903 l(3)73Ah agucaaucgaaccuuCAUUUAa |||||| ugcauguauaaagucGUAAAUa 2 8 127 148 [dm3:3L:16583001-16583022:+] 0.5329 120 6 -2.88 -0.2069 MIMAT0011787 dme-miR-2280* 48903 l(3)73Ah agucaaucgaaccuuCAUUUAa |||||| acaaaacacacgaauGUAAAUa 2 8 320 341 [dm3:3L:16583194-16583215:+] 0.6166 120 6 -4.08 -0.4052 MIMAT0011791 dme-miR-2283 48903 l(3)73Ah uaacaGCAUAAGUACUAUAAAAg ||| | || ||||||| uucucCGUUUGCA--AUAUUUUa 2 19 250 270 [dm3:3L:16583124-16583144:+] 0.5604 151 7 -7.25 -1.1075 MIMAT0011791 dme-miR-2283 48903 l(3)73Ah uaACAGCAUAAGUACUAUAAAAg || : ||||: | ||| ||| aaUGAUCUAUUU-UUAUAAUUUa 2 22 28 49 [dm3:3L:16582902-16582923:+] 0.6551 127 0 -3.77 -0.1221 MIMAT0011791 dme-miR-2283 48903 l(3)73Ah uaacaGCAUAAGUACUAUAAAAg :|||||:| |||||| auauaUGUAUUUA--UUAUUUUa 2 19 295 315 [dm3:3L:16583169-16583189:+] 0.5885 127 6 -9.98 -0.4384 MIMAT0012199 dme-miR-2492 48903 l(3)73Ah aaacuuucgagagcUGUUUUGUa |||||||| uauuauuuuaauguACAAAACAc 2 10 306 328 [dm3:3L:16583180-16583202:+] 0.6166 145 7 -8.53 -1.2208 MIMAT0012201 dme-miR-2493 48903 l(3)73Ah ugcggaGCGUGUUUAUGUGUGCc :|:||||| ||||||| uuuuaaUGUACAAA-ACACACGa 2 18 311 332 [dm3:3L:16583185-16583206:+] 0.6166 163 7 -20.56 -1.3263 MIMAT0000334 dme-miR-92a 48903 l(3)73Ah uauccggcccuguucACGUUAc |||||| ucaacguucuccguuUGCAAUa 2 8 244 265 [dm3:3L:16583118-16583139:+] 0.5466 120 6 -7.44 -0.1567 MIMAT0000335 dme-miR-219 48903 l(3)73Ah guUCUUAACGCAAACCUGUUAgu | |||| | | |||||| uuAUAAUU---UAUUGACAAUgc 3 22 40 59 [dm3:3L:16582914-16582933:+] 0.6590 129 0 -5.66 -0.2159 MIMAT0000338 dme-miR-277 48903 l(3)73Ah acagcauggucuAUCACGUAAAu |: ||||||| ugccgccuucuuUGCUGCAUUUg 2 12 209 231 [dm3:3L:16583083-16583105:+] 0.5329 143 7 -11.23 -0.2232 MIMAT0000338 dme-miR-277 48903 l(3)73Ah acAGCAUGGUCUAUCACGUAAAu |:| | :| ||| ||:|||| guUUGAAAUAUAUA-UGUAUUUa 2 22 286 307 [dm3:3L:16583160-16583181:+] 0.5885 143 0 -7.83 -0.1889 MIMAT0000358 dme-miR-92b 48903 l(3)73Ah cguccggcccugaucACGUUAa |||||| ucaacguucuccguuUGCAAUa 2 8 244 265 [dm3:3L:16583118-16583139:+] 0.5466 120 6 -7.53 -0.1567 MIMAT0000361 dme-miR-87 48903 l(3)73Ah gugugGACUUUAAAACGAGUu ||| | |||||||| cuuugCUGCA--UUUGCUCAu 2 17 218 236 [dm3:3L:16583092-16583110:+] 0.5329 149 7 -12.53 -0.7264 MIMAT0000365 dme-bantam 48903 l(3)73Ah uuagucgaaaguUUUACUAGAgu ||||||||| uaaugccacaacAAAUGAUCUau 3 12 15 37 [dm3:3L:16582889-16582911:+] 0.6551 135 0 -10.00 -0.6699 MIMAT0000365 dme-bantam 48903 l(3)73Ah uuAGUCGAAAGUU-U----UACUAGAGu || |:|| ||| | ||| |||| ucUCCGUUUGCAAUAUUUUAUGUUCUCc 2 22 251 278 [dm3:3L:16583125-16583152:+] 0.5604 123 0 -8.39 -0.1076 MIMAT0000391 dme-miR-305 48903 l(3)73Ah gucucguggacuacuuCAUGUUa |||||| uauuuauuauuuuaauGUACAAa 2 8 302 324 [dm3:3L:16583176-16583198:+] 0.5885 120 6 -7.20 -0.4324 MIMAT0000402 dme-miR-310 48903 l(3)73Ah uuuccggcccuucacACGUUAu |||||| ucaacguucuccguuUGCAAUa 2 8 244 265 [dm3:3L:16583118-16583139:+] 0.5466 120 6 -9.79 -0.1567 MIMAT0000403 dme-miR-311 48903 l(3)73Ah aguccggccacuuacACGUUAu |||||| ucaacguucuccguuUGCAAUa 2 8 244 265 [dm3:3L:16583118-16583139:+] 0.5466 120 6 -9.79 -0.1537 MIMAT0000404 dme-miR-312 48903 l(3)73Ah aguccggcagaguucACGUUAu |||||| ucaacguucuccguuUGCAAUa 2 8 244 265 [dm3:3L:16583118-16583139:+] 0.5466 120 6 -15.20 -0.1537 MIMAT0000405 dme-miR-313 48903 l(3)73Ah agcccgacacuuuucACGUUAu |||||| ucaacguucuccguuUGCAAUa 2 8 244 265 [dm3:3L:16583118-16583139:+] 0.5466 120 6 -8.85 -0.1567 MIMAT0005463 dme-miR-iab-4as-5p 48903 l(3)73Ah gccaUAUGGAAGUCAUAUGCAUu || : || | ||:|||| uauaAUUUAUUGACAAUGCGUAa 2 20 41 63 [dm3:3L:16582915-16582937:+] 0.6590 135 0 -10.06 -0.1436 MIMAT0005504 dme-miR-987 48903 l(3)73Ah guaguUAGGUCUGAUAAAUGAAAu || :: |:| |||:||| aauauAUAUGUAUUUAUUAUUUUa 2 20 292 315 [dm3:3L:16583166-16583189:+] 0.5885 135 0 -6.15 -0.1384 MIMAT0005516 dme-miR-252 48903 l(3)73Ah gaGGACGCCGUG-AU-CAUGAAUc ::|| :|: || |||:||| agUUUGAAAUAUAUAUGUAUUUAu 2 21 285 308 [dm3:3L:16583159-16583182:+] 0.5885 126 0 -7.22 -0.1068 MIMAT0005520 dme-miR-1000 48903 l(3)73Ah ugacgacacugucCUGUUAUa ||||||: uuuauaauuuauuGACAAUGc 2 9 39 59 [dm3:3L:16582913-16582933:+] 0.6590 124 0 -7.53 -0.2159 MIMAT0005019 dme-miR-1006 48903 l(3)73Ah gaUACUUAUUCU-UUAGCUUAAAu ||| | || | | ||||| | uaAUGUACAAAACACACGAAUGUa 2 22 314 337 [dm3:3L:16583188-16583211:+] 0.6166 124 0 -5.38 -0.2118 MIMAT0005027 dme-miR-1014 48903 l(3)73Ah gacgUUUACUUUUACUUAAAa |||| | ||| |||| uuugAAAUAUAUAUGUAUUUa 2 18 287 307 [dm3:3L:16583161-16583181:+] 0.5885 129 0 -3.44 -0.1975

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score l(3)73Ah RAID00164532 dme-miR-219-5p miRNA MIMAT0000335 l(3)73Ah mRNA 48903 Prediction 0.1828 l(3)73Ah RAID00430294 dme-miR-1000-5p miRNA MIMAT0005520 l(3)73Ah mRNA 48903 Prediction 0.1828 l(3)73Ah RAID00575364 dme-miR-iab-8-5p miRNA MIMAT0005463 l(3)73Ah mRNA 48903 Prediction 0.1828 l(3)73Ah RAID00976782 dme-miR-312-3p miRNA MIMAT0000404 l(3)73Ah mRNA 48903 Prediction 0.2202 l(3)73Ah RAID01102440 dme-miR-956-3p miRNA MIMAT0005469 l(3)73Ah mRNA 48903 Prediction 0.1828 l(3)73Ah RAID01334272 dme-miR-277-3p miRNA MIMAT0000338 l(3)73Ah mRNA 48903 Prediction 0.2202 l(3)73Ah RAID01699043 dme-miR-987-5p miRNA MIMAT0005504 l(3)73Ah mRNA 48903 Prediction 0.1828 l(3)73Ah RAID01727088 dme-miR-310-3p miRNA MIMAT0000402 l(3)73Ah mRNA 48903 Prediction 0.2202 l(3)73Ah RAID02415003 dme-bantam-3p miRNA MIMAT0000365 l(3)73Ah mRNA 48903 Prediction 0.1828 l(3)73Ah RAID02613403 dme-miR-313-3p miRNA MIMAT0000405 l(3)73Ah mRNA 48903 Prediction 0.2202 l(3)73Ah RAID02783414 dme-miR-92a-3p miRNA MIMAT0000334 l(3)73Ah mRNA 48903 Prediction 0.2202 l(3)73Ah RAID02868839 dme-miR-252-5p miRNA MIMAT0005516 l(3)73Ah mRNA 48903 Prediction 0.1828 l(3)73Ah RAID03121976 dme-miR-87-3p miRNA MIMAT0000361 l(3)73Ah mRNA 48903 Prediction 0.2202 l(3)73Ah RAID03174582 dme-miR-1014-3p miRNA MIMAT0005027 l(3)73Ah mRNA 48903 Prediction 0.1828 l(3)73Ah RAID03387670 dme-miR-311-3p miRNA MIMAT0000403 l(3)73Ah mRNA 48903 Prediction 0.2202 l(3)73Ah RAID03444462 dme-miR-92b-3p miRNA MIMAT0000358 l(3)73Ah mRNA 48903 Prediction 0.2381 l(3)73Ah RAID03593795 dme-miR-305-5p miRNA MIMAT0000391 l(3)73Ah mRNA 48903 Prediction 0.2381 l(3)73Ah RAID03878101 dme-miR-1006-3p miRNA MIMAT0005019 l(3)73Ah mRNA 48903 Prediction 0.1828