DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 45894 lds auAGUAAAGUAUACGUUGCAU-UUAUGu |::| |:| | :||| || ||||| cuUUGUAUUAAAAUUAAC-UAGAAUACc 2 26 161 187 [dm3:3R:3750115-3750141:+] 0.5199 127 0 -5.25 -1.1641 MIMAT0000364 dme-miR-289 45894 lds ucagcguccGAGGUGAAUUUAUAAAu :| || |||||||| uauguuuauUUACAGCGAAAUAUUUa 2 18 84 109 [dm3:3R:3750038-3750063:+] 0.5199 149 7 -10.46 -1.1452 MIMAT0005488 dme-miR-972 45894 lds cggAUUUAUAAG--C--AUAACAUgu || ||||| | ||||||| aaaUAUUUAUUCAAGAUUAUUGUAaa 3 20 101 126 [dm3:3R:3750055-3750080:+] 0.5199 133 0 -7.33 -0.3166 MIMAT0005499 dme-miR-983 45894 lds aguAAUCAAGCUUU---GCAUAAUa ||: ||| ||: :|||||| ucuUUGUUUCAAAGCUUUGUAUUAa 2 20 147 171 [dm3:3R:3750101-3750125:+] 0.5199 138 6 -7.31 -0.3254 MIMAT0005517 dme-miR-997 45894 lds acuuugaggaagcuCAAACCc |||||| auaccauuuaaguuGUUUGGu 2 8 183 203 [dm3:3R:3750137-3750157:+] 0.5199 120 6 -8.33 -0.1006 MIMAT0011784 dme-miR-2279* 45894 lds uuaAAGUGUGUGUCUAUAAAUu ||:||| | ||||||| uuaUUUACAGCGAAAUAUUUAu 2 20 89 110 [dm3:3R:3750043-3750064:+] 0.5199 159 7 -9.59 -1.0824 MIMAT0011787 dme-miR-2280* 45894 lds agucaaucgaaccuuCAUUUAa |||||| uuauucaagauuauuGUAAAUu 2 8 107 128 [dm3:3R:3750061-3750082:+] 0.5199 120 6 -4.89 -0.1760 MIMAT0012209 dme-miR-2497 45894 lds gaCGUUUGUAAC-AUUUACAAca |:|||: ||| | |||||| uuGUAAAUUUUGUUUAAUGUUuu 3 21 120 142 [dm3:3R:3750074-3750096:+] 0.5199 147 0 -13.22 -0.1316 MIMAT0012214 dme-miR-2500* 45894 lds ccaUAACAUAUACACACAAGG-AAUg ||| |||| || ||||| ||| gugAUU-UAUA-AUGAGUUCCAUUAa 2 23 202 225 [dm3:3R:3750156-3750179:+] 0.5199 130 0 -9.09 -1.2087 MIMAT0000105 dme-miR-1 45894 lds gaGGUAUGAAG-AAAUGUAAGGu :|:| :| | |:|||||| ugUCGUUUUGCAAAUGCAUUCCa 2 21 48 70 [dm3:3R:3750002-3750024:+] 0.4388 131 6 -15.00 -0.1570 MIMAT0000106 dme-miR-2a 45894 lds cgaGUAGUUUCGACCGA-CACUAu |||: |||:|| :| ||||| uacCAUUUAAGUUGUUUGGUGAUu 2 21 184 207 [dm3:3R:3750138-3750161:+] 0.5199 124 0 -16.32 -0.1123 MIMAT0000109 dme-miR-4 45894 lds aguuaccAACAGA---UCGAAAUa ||||:| ||||||: cauuucuUUGUUUCAAAGCUUUGu 2 15 143 166 [dm3:3R:3750097-3750120:+] 0.5199 133 0 -10.83 -0.2177 MIMAT0000115 dme-miR-10-5p 45894 lds uuguuUAAGCCUAGAUGUCCCa || : ||:||||| | auuuuAUGUUUAUUUACAGCGa 2 18 80 101 [dm3:3R:3750034-3750055:+] 0.5199 121 0 -7.43 -0.2114 MIMAT0000319 dme-miR-263a 45894 lds caCUUAAGA-AGGUCACGGUAAUUg || || | : ||| ||||||| guGAUUUAUAAUGAGUUCCAUUAAa 2 23 202 226 [dm3:3R:3750156-3750180:+] 0.5199 157 7 -13.67 -1.2752 MIMAT0000337 dme-miR-276a 45894 lds ucucgugccaUACUUCAAGGau ||| |||||| gugauuuauaAUG-AGUUCCau 3 13 202 222 [dm3:3R:3750156-3750176:+] 0.5199 126 0 -9.57 -0.1077 MIMAT0000347 dme-miR-283 45894 lds ucuUAAUGGUCG-ACUAUAAAu ||| |||| |||||| uuuAUUUACAGCGAAAUAUUUa 2 19 88 109 [dm3:3R:3750042-3750063:+] 0.5199 125 6 -10.61 -0.1453 MIMAT0000352 dme-miR-79 45894 lds uacGAAACCAUUAG-AUCGAAAu ||||| | || |||||| uuuCUUUGUU--UCAAAGCUUUg 2 20 145 165 [dm3:3R:3750099-3750119:+] 0.5199 123 6 -11.51 -0.2337 MIMAT0000354 dme-miR-276b 45894 lds ucucgugccAUAAUUCAAGGau || |:|||||| ggugauuuaUAAUGAGUUCCau 3 14 201 222 [dm3:3R:3750155-3750176:+] 0.5199 133 0 -9.76 -0.1164 MIMAT0000409 dme-miR-317 45894 lds ugaccuAUGGUGG-UCGACACAAGu || |:: | ||||||| uuccauUAAAAUUGAAAUGUGUUCu 2 19 217 241 [dm3:3R:3750171-3750195:+] 0.5199 141 7 -15.58 -1.2647 MIMAT0000411 dme-miR-2c 45894 lds cgGGUAGUUUCGACCGA-CACUAu ||||: |||:|| :| ||||| uaCCAUUUAAGUUGUUUGGUGAUu 2 22 184 207 [dm3:3R:3750138-3750161:+] 0.5199 129 0 -19.86 -0.1123 MIMAT0005497 dme-miR-981 45894 lds acGUCCAAAGCAGCUGUUGCUu :| |||| |: |||:||| uuUAUGUUU-AUUUACAGCGAa 2 21 82 102 [dm3:3R:3750036-3750056:+] 0.5199 138 0 -12.17 -0.1325 MIMAT0005030 dme-miR-1017 45894 lds ccUACUCAAACCCA-UCUCGAAAg || |||| | | |||||| ucAUUUCUUUGUUUCAAAGCUUUg 2 22 142 165 [dm3:3R:3750096-3750119:+] 0.5199 124 6 -4.88 -0.2316

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score lds RAID00485957 dme-miR-2c-3p miRNA MIMAT0000411 lds mRNA 45894 Prediction 0.1828 lds RAID00520070 dme-miR-1-3p miRNA MIMAT0000105 lds mRNA 45894 Prediction 0.2202 lds RAID01630484 dme-miR-276a-3p miRNA MIMAT0000337 lds mRNA 45894 Prediction 0.1828 lds RAID01984939 dme-miR-276b-3p miRNA MIMAT0000354 lds mRNA 45894 Prediction 0.1828 lds RAID02016303 dme-miR-981-3p miRNA MIMAT0005497 lds mRNA 45894 Prediction 0.1828 lds RAID02477693 dme-miR-2a-3p miRNA MIMAT0000106 lds mRNA 45894 Prediction 0.1828 lds RAID02848571 dme-miR-4-3p miRNA MIMAT0000109 lds mRNA 45894 Prediction 0.1828 lds RAID03186401 dme-miR-263a-5p miRNA MIMAT0000319 lds mRNA 45894 Prediction 0.1828 lds RAID03248913 dme-miR-317-3p miRNA MIMAT0000409 lds mRNA 45894 Prediction 0.2202 lds RAID03429547 dme-miR-79-3p miRNA MIMAT0000352 lds mRNA 45894 Prediction 0.1828 lds RAID03461089 dme-miR-1013-3p miRNA MIMAT0005026 lds mRNA 45894 Prediction 0.1828 lds RAID03635117 dme-miR-283-5p miRNA MIMAT0000347 lds mRNA 45894 Prediction 0.1828 lds RAID03908076 dme-miR-1017-3p miRNA MIMAT0005030 lds mRNA 45894 Prediction 0.1828 lds RAID03960023 dme-miR-10-5p miRNA MIMAT0000115 lds mRNA 45894 Prediction 0.1828