DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37415 Pu auaGUAAAGU-AUACGUUGCAUUUAUgu || | | ||||: |: |||||| auaCAAUAAAUUAUGU-AUUUAAAUAac 3 25 614 640 [dm3:2R:17070084-17070110:+] 0.5105 137 0 -7.65 -0.1897 MIMAT0000364 dme-miR-289 37415 Pu ucagcguccgaGGUGAAUUUAUAAAu || || ||||||| gaccaacuaaaCCCCUACAAUAUUUu 2 16 33 58 [dm3:2R:17069503-17069528:+] 0.5013 151 7 -7.16 -0.2856 MIMAT0005464 dme-miR-iab-4as-3p 37415 Pu auuugcAUAUGACUUACAUAGg || |:| ||||||: auacaaUAAAUU--AUGUAUUu 2 17 614 633 [dm3:2R:17070084-17070103:+] 0.5105 129 0 -6.67 -0.1720 MIMAT0005495 dme-miR-979 37415 Pu aaucggacucaagcCCUUCUu |||||| gaccaaaguauauuGGAAGAu 2 8 521 541 [dm3:2R:17069991-17070011:+] 0.5105 120 6 -11.47 -0.1331 MIMAT0011784 dme-miR-2279* 37415 Pu uuaaagUGUGU-GUCUAUAAAUu |:| | :| :|||||| uauacaAUAAAUUAUGUAUUUAa 2 17 613 635 [dm3:2R:17070083-17070105:+] 0.5105 131 6 -6.62 -0.3710 MIMAT0011791 dme-miR-2283 37415 Pu uaacagcauaaguacUAUAAAAg ||||||| aacuaaaccccuacaAUAUUUUu 2 9 37 59 [dm3:2R:17069507-17069529:+] 0.5013 140 7 -3.34 -0.3583 MIMAT0012194 dme-miR-307-as* 37415 Pu gguagUGUUG-GAGGAAC-UCACu |::|| :| |||| |||| uguaaAUGACGUUGCUUGUAGUGa 2 18 570 593 [dm3:2R:17070040-17070063:+] 0.5105 120 0 -15.53 -0.6187 MIMAT0012196 dme-miR-2489 37415 Pu ugACGUUUAUGUUGUAUGUUAu ||| || | :||||||| gcUGCUUAUUAAUUAUACAAUa 2 21 600 621 [dm3:2R:17070070-17070091:+] 0.5105 156 7 -16.83 -1.2732 MIMAT0012209 dme-miR-2497 37415 Pu gacgUUUGUAACAUUUACAAca :|| ||| |||||||| auugGAAGAUUUUAAAUGUUaa 3 19 532 553 [dm3:2R:17070002-17070023:+] 0.5105 150 0 -9.98 -0.2846 MIMAT0000114 dme-miR-9a 37415 Pu agUAUGUCGAUCUAU---UGGUUUCu ||:: || || | ||||||| uaAUGUUCCUCGACAGGGACCAAAGu 2 22 504 529 [dm3:2R:17069974-17069999:+] 0.4904 148 7 -14.39 -0.3778 MIMAT0000334 dme-miR-92a 37415 Pu uauccggcccuguUCACGUUAc |||||||| auuucauuuaguuAGUGCAAUg 2 10 132 153 [dm3:2R:17069602-17069623:+] 0.5291 145 7 -13.49 -0.8260 MIMAT0000334 dme-miR-92a 37415 Pu uauccggcccuguuCACGUUAc ||||||| acgauuaaugcauuGUGCAAUa 2 9 356 377 [dm3:2R:17069826-17069847:+] 0.5251 140 7 -9.09 -1.1218 MIMAT0000338 dme-miR-277 37415 Pu acAGCAUG--GUCUAUCACGUAAAu |: ||| :| || ||:|||| aaUUAUACAAUAAAUUAUGUAUUUa 2 22 610 634 [dm3:2R:17070080-17070104:+] 0.5105 136 0 -6.95 -0.1353 MIMAT0000340 dme-miR-133 37415 Pu uguCGACCAACUUCCCCUGGUu |:| | || ||||||| aauGUUCCUCGACAGGGACCAa 2 20 505 526 [dm3:2R:17069975-17069996:+] 0.4904 151 7 -15.54 -0.8248 MIMAT0000358 dme-miR-92b 37415 Pu cguccggcccUGAUCACGUUAa ::||||||||| auuucauuuaGUUAGUGCAAUg 2 13 132 153 [dm3:2R:17069602-17069623:+] 0.5291 152 7 -12.21 -0.8260 MIMAT0000358 dme-miR-92b 37415 Pu cguccggcCCUGAUCACGUUAa | |:| ||||||| cgauuaauGCAUU-GUGCAAUa 2 15 357 377 [dm3:2R:17069827-17069847:+] 0.5251 144 7 -8.19 -1.1043 MIMAT0000361 dme-miR-87 37415 Pu gugugGACUUUA--AAACGAGUu :| |||| | |||||| aaaugUUAAAAUUAUAUGCUCAu 2 17 545 567 [dm3:2R:17070015-17070037:+] 0.5105 123 6 -8.56 -0.1389 MIMAT0000392 dme-miR-9c 37415 Pu agaugucgaUCUUAUGGUUUCu ||:: ||||||| uuccucgacAGGG-ACCAAAGu 2 14 509 529 [dm3:2R:17069979-17069999:+] 0.4904 143 7 -14.07 -0.3552 MIMAT0000395 dme-miR-9b 37415 Pu guAUGUCGAUUUUAGUGGUUUCu | | | | |: ||||||| ugUUCCUCGACAGGGACCAAAGu 2 22 507 529 [dm3:2R:17069977-17069999:+] 0.4904 145 7 -11.62 -0.3778 MIMAT0000402 dme-miR-310 37415 Pu uuuccggccCUUCACACGUUAu | | |||||||| acgauuaauGCAUUGUGCAAUa 2 14 356 377 [dm3:2R:17069826-17069847:+] 0.5251 149 7 -10.84 -1.1218 MIMAT0000402 dme-miR-310 37415 Pu uuuccggcccuUCA--CACGUUAu ||| ||||||| ugauuucauuuAGUUAGUGCAAUg 2 12 130 153 [dm3:2R:17069600-17069623:+] 0.5291 142 7 -10.43 -0.8260 MIMAT0000403 dme-miR-311 37415 Pu aguccggccAC-UUACACGUUAu || | |||||||| uacgauuaaUGCAUUGUGCAAUa 2 14 355 377 [dm3:2R:17069825-17069847:+] 0.5251 148 7 -12.60 -1.1218 MIMAT0000403 dme-miR-311 37415 Pu aguccggccacuuaCACGUUAu ||||||| auuucauuuaguuaGUGCAAUg 2 9 132 153 [dm3:2R:17069602-17069623:+] 0.5291 140 7 -10.21 -0.8224 MIMAT0000404 dme-miR-312 37415 Pu aguccggcagaguUCACGUUAu |||||||| auuucauuuaguuAGUGCAAUg 2 10 132 153 [dm3:2R:17069602-17069623:+] 0.5291 145 7 -13.00 -0.8224 MIMAT0000404 dme-miR-312 37415 Pu aguccggcagaguuCACGUUAu ||||||| acgauuaaugcauuGUGCAAUa 2 9 356 377 [dm3:2R:17069826-17069847:+] 0.5251 140 7 -11.90 -1.1218 MIMAT0000405 dme-miR-313 37415 Pu agcccgacACUUUUCACGUUAu || | ||||||| acgauuaaUGCAUUGUGCAAUa 2 15 356 377 [dm3:2R:17069826-17069847:+] 0.5251 146 7 -12.60 -1.1196 MIMAT0000405 dme-miR-313 37415 Pu agcccgacacuuuUCACGUUAu |||||||| auuucauuuaguuAGUGCAAUg 2 10 132 153 [dm3:2R:17069602-17069623:+] 0.5291 145 7 -11.54 -0.8189 MIMAT0005497 dme-miR-981 37415 Pu acguccaaagcAGCUGUUGCuu |: |||||| gaacgauaauuUUUACAACGua 3 12 329 350 [dm3:2R:17069799-17069820:+] 0.5251 123 0 -7.88 -0.2129 MIMAT0005501 dme-miR-927 37415 Pu ccAUUUCGCAUCCUUAAG-AUUu ||||| || | |||| ||| uaUAAAGAGU-UGCAUUCAUAAu 2 21 486 507 [dm3:2R:17069956-17069977:+] 0.4703 126 0 -6.22 -0.4320 MIMAT0005506 dme-miR-989 37415 Pu caaggugaugcAGUGUAGUgu |||||||| uuauaaacaguUCACAUCAaa 3 11 428 448 [dm3:2R:17069898-17069918:+] 0.4703 130 0 -11.96 -0.1363 MIMAT0005511 dme-miR-929 37415 Pu guuagacUGAGGCAAUCCCUc | |: ||||||| cacggcaAAUUGUUUAGGGAa 2 15 399 419 [dm3:2R:17069869-17069889:+] 0.4703 142 7 -13.18 -1.1729 MIMAT0005516 dme-miR-252 37415 Pu gaggacgccgUGAU-CAUGAAUc |:|| |||:||| uauacaauaaAUUAUGUAUUUAa 2 13 613 635 [dm3:2R:17070083-17070105:+] 0.5105 131 0 -6.05 -0.1053 MIMAT0005520 dme-miR-1000 37415 Pu ugacgacacuguccUGUUAUa |||||| ugcuuauuaauuauACAAUAa 2 8 602 622 [dm3:2R:17070072-17070092:+] 0.5105 120 6 -5.41 -0.3290 MIMAT0005019 dme-miR-1006 37415 Pu gauacuuaUUCUUUAGCU-UAAAu ||||:: ||| |||| gagauucgAAGAGGACGAGAUUUg 2 16 250 273 [dm3:2R:17069720-17069743:+] 0.4570 123 0 -12.54 -0.3847 MIMAT0005027 dme-miR-1014 37415 Pu gacguUUACUU-UUACUUAAAa ||| || ||| |||| uauacAAUAAAUUAUGUAUUUa 2 17 613 634 [dm3:2R:17070083-17070104:+] 0.5105 123 0 -3.44 -0.1301

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pu RAID00136171 dme-miR-9b-5p miRNA MIMAT0000395 Pu mRNA 37415 Prediction 0.1828 Pu RAID00359213 dme-miR-133-3p miRNA MIMAT0000340 Pu mRNA 37415 Prediction 0.2202 Pu RAID00707674 dme-miR-1014-3p miRNA MIMAT0005027 Pu mRNA 37415 Prediction 0.2381 Pu RAID00890327 dme-miR-252-5p miRNA MIMAT0005516 Pu mRNA 37415 Prediction 0.1828 Pu RAID00909625 dme-miR-313-3p miRNA MIMAT0000405 Pu mRNA 37415 Prediction 0.2202 Pu RAID01070748 dme-miR-92a-3p miRNA MIMAT0000334 Pu mRNA 37415 Prediction 0.2202 Pu RAID01204146 dme-miR-310-3p miRNA MIMAT0000402 Pu mRNA 37415 Prediction 0.2202 Pu RAID01208262 dme-miR-9c-5p miRNA MIMAT0000392 Pu mRNA 37415 Prediction 0.1828 Pu RAID02277255 dme-miR-1006-3p miRNA MIMAT0005019 Pu mRNA 37415 Prediction 0.2202 Pu RAID02287547 dme-miR-989-3p miRNA MIMAT0005506 Pu mRNA 37415 Prediction 0.1828 Pu RAID02373327 dme-miR-312-3p miRNA MIMAT0000404 Pu mRNA 37415 Prediction 0.2202 Pu RAID02388331 dme-miR-927-5p miRNA MIMAT0005501 Pu mRNA 37415 Prediction 0.1828 Pu RAID02504407 dme-miR-9a-5p miRNA MIMAT0000114 Pu mRNA 37415 Prediction 0.1828 Pu RAID02586831 dme-miR-277-3p miRNA MIMAT0000338 Pu mRNA 37415 Prediction 0.1828 Pu RAID02933455 dme-miR-87-3p miRNA MIMAT0000361 Pu mRNA 37415 Prediction 0.1828 Pu RAID03237502 dme-miR-1000-5p miRNA MIMAT0005520 Pu mRNA 37415 Prediction 0.2202 Pu RAID03367669 dme-miR-10-3p miRNA MIMAT0012531 Pu mRNA 37415 Prediction 0.1828 Pu RAID03453204 dme-miR-981-3p miRNA MIMAT0005497 Pu mRNA 37415 Prediction 0.1828 Pu RAID03622204 dme-miR-929-3p miRNA MIMAT0005511 Pu mRNA 37415 Prediction 0.2381 Pu RAID03817390 dme-miR-311-3p miRNA MIMAT0000403 Pu mRNA 37415 Prediction 0.2202 Pu RAID03853527 dme-miR-92b-3p miRNA MIMAT0000358 Pu mRNA 37415 Prediction 0.2381