DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43944 sbr auaGUAAAGUAUACGUUGCAUUUAUGu | || ||| | |: |||||| ucgCCUUACAUUUUGUAUACAAAUACc 2 25 525 551 [dm3:X:10726991-10727017:-] 0.5463 128 6 -8.85 -0.1526 MIMAT0000343 dme-miR-280 43944 sbr auagUAAAGUAUACGUUGCAUUUAUgu | | :| || || |||||| caaaAGUGUAGAUUCA---UAAAUAaa 3 24 721 744 [dm3:X:10726798-10726821:-] 0.5299 127 0 -7.51 -0.2816 MIMAT0000344 dme-miR-281-1* 43944 sbr ugacagcugccuGUCGAGAGAa :|||||||| gauagauuaguuUAGCUCUCUu 2 11 225 246 [dm3:X:10727296-10727317:-] 0.5355 146 7 -15.87 -1.0459 MIMAT0000360 dme-miR-287 43944 sbr cacGUUUGCUAAAAG-UUGUGu ||||| | ||| ||||| agcCAAAC-ACCUUCAAACACa 2 19 341 361 [dm3:X:10727181-10727201:-] 0.5355 124 0 -12.34 -0.9416 MIMAT0005500 dme-miR-984 43944 sbr uuuaaggUUGGCAUAAAUGGAGu |||| | ||||||: acucggaAACCAAAAUUACCUUu 2 17 598 620 [dm3:X:10726922-10726944:-] 0.5299 140 0 -11.03 -0.1195 MIMAT0005502 dme-miR-985 43944 sbr acgggcugguaaCCUUGUAAAc | ||||||| auagaauaaaaaGAAACAUUUu 2 11 552 573 [dm3:X:10726969-10726990:-] 0.5234 142 7 -4.72 -0.9260 MIMAT0005509 dme-miR-991 43944 sbr ugAAAGGUUUGAUGUUGAAAUu |||: ||:|| ||:|||| ggUUUUGUAAUUA-AAUUUUAa 2 21 73 93 [dm3:X:10727449-10727469:-] 0.5003 146 0 -7.82 -0.1091 MIMAT0005022 dme-miR-1009 43944 sbr gacuuUACAUUGUUAAAAACUCu || | ||||||| || gauucAUAAAUAAAUUUUUCAGa 2 19 731 753 [dm3:X:10726789-10726811:-] 0.5299 126 0 -6.18 -0.1160 MIMAT0011791 dme-miR-2283 43944 sbr uaacagcauaaguacuAUAAAAg |||||| aaagaaacccaauuuuUAUUUUa 2 8 411 433 [dm3:X:10727109-10727131:-] 0.5409 120 6 -1.43 -0.2471 MIMAT0012209 dme-miR-2497 43944 sbr gacGUUUGUA--ACAU--UUACAACa :||||:| || | ||||||| uauUAAACGUAAUGCAACAAUGUUGu 2 20 378 403 [dm3:X:10727139-10727164:-] 0.5355 153 7 -12.48 -0.4545 MIMAT0012531 dme-miR-10-3p 43944 sbr uuuggagagaucUUGGCUUAAAc ||::|||||| agccguaaauucAAUUGAAUUUa 2 12 664 686 [dm3:X:10726856-10726878:-] 0.5299 135 6 -10.37 -0.1026 MIMAT0000319 dme-miR-263a 43944 sbr cacuuaagaaggucacgGUAAUUg |||||| uauauaaaaauuauauaCAUUAAg 2 8 696 719 [dm3:X:10726823-10726846:-] 0.5299 120 6 -4.62 -0.1563 MIMAT0000331 dme-miR-184 43944 sbr cgGGAAUAGUCAAGAGGCAGGu :||| | ||| ||||||| ucUCUU-UAAGU--UCCGUCCg 2 21 241 259 [dm3:X:10727283-10727301:-] 0.5355 151 7 -23.75 -0.4909 MIMAT0000349 dme-miR-281-2* 43944 sbr ugacagcugccuAUCGAGAGAa ||||||||| gauagauuaguuUAGCUCUCUu 2 11 225 246 [dm3:X:10727296-10727317:-] 0.5355 150 7 -15.54 -1.0459 MIMAT0000390 dme-miR-304 43944 sbr gaGUGUAA--AUG-UUUAAC-UCUAAu :||||| || ||| || ||||| uaUACAUUAAGACAAAAGUGUAGAUUc 2 22 709 735 [dm3:X:10726807-10726833:-] 0.5299 127 0 -13.50 -1.2237 MIMAT0000391 dme-miR-305 43944 sbr guCUCGUG-GACUACUUCAU-GUUa | |||| :| : | |||| ||| guGUGCACAUUCGGGCAGUAGCAAu 2 22 152 176 [dm3:X:10727366-10727390:-] 0.5507 120 0 -11.82 -0.5225 MIMAT0000402 dme-miR-310 43944 sbr uuUCCGGCCCUU---CACACGU-UAu | ||:| ||| ||||||| || uuAAGCUGCGAAGUUGUGUGCACAUu 2 21 137 162 [dm3:X:10727380-10727405:-] 0.5331 127 0 -15.94 -0.2016 MIMAT0000408 dme-miR-316 43944 sbr gcGGUCAUUCGCCUUUUUCUgu ||| | || ||||||| uaCCA-U-AGAAUAAAAAGAaa 3 21 548 567 [dm3:X:10726975-10726994:-] 0.5234 128 0 -10.23 -0.1474 MIMAT0000412 dme-miR-iab-4-5p 43944 sbr aguccuAUGUAAGUCAUAUGca ||||||: |||||| ucgccuUACAUUUUGUAUACaa 3 17 525 546 [dm3:X:10726996-10727017:-] 0.5463 148 0 -13.36 -0.1725 MIMAT0000412 dme-miR-iab-4-5p 43944 sbr aguccuauguaagucAUAUGCa |||||| auuuuuauuuuaauaUAUACGa 2 8 422 443 [dm3:X:10727099-10727120:-] 0.5409 120 6 -5.92 -0.1143 MIMAT0000413 dme-miR-iab-4-3p 43944 sbr caauGCAUAUGACUUCCAUAUGgc | || |:| |||||| ucgcCUUACAUU--UUGUAUACaa 3 21 525 546 [dm3:X:10726996-10727017:-] 0.5463 121 0 -8.95 -0.1775 MIMAT0005476 dme-miR-962 43944 sbr cugucguaguuaaagaGAUGGAAua :|||||| gacucggaaaccaaaaUUACCUUua 3 10 597 621 [dm3:X:10726921-10726945:-] 0.5299 121 0 -10.17 -0.2834 MIMAT0005477 dme-miR-963 43944 sbr cuuugUUGGACUAUAAAUGGAAca |||| | | ||||||| ucggaAACC--AAAAUUACCUUua 3 20 600 621 [dm3:X:10726921-10726942:-] 0.5299 136 0 -9.09 -0.2859 MIMAT0005480 dme-miR-965 43944 sbr uuccccuuuucgauaUGCGAAu |||||| uucgauuuacaauacACGCUUa 2 8 643 664 [dm3:X:10726878-10726899:-] 0.5299 120 6 -8.86 -0.1063 MIMAT0005501 dme-miR-927 43944 sbr ccaUUUCGCAUCCUUAAG-AUUu ||||:|||| |||| ||| acaAAAGUGUAG--AUUCAUAAa 2 20 720 740 [dm3:X:10726802-10726822:-] 0.5299 132 0 -14.65 -1.2370 MIMAT0005501 dme-miR-927 43944 sbr ccauuucgcauccUUAAGAUUu ||||:||| gguuuuguaauuaAAUUUUAAa 2 10 73 94 [dm3:X:10727448-10727469:-] 0.5003 129 0 -8.79 -0.1123 MIMAT0005503 dme-miR-986 43944 sbr agucagUGUUGCGAUAAGCUcu | || :||||||| aauagaAAAAAAUUAUUCGAuu 3 17 628 649 [dm3:X:10726893-10726914:-] 0.5299 132 0 -9.64 -0.1228 MIMAT0005506 dme-miR-989 43944 sbr caaGGUGAUGCAGUGUA-GUGu ||:| ::| ||||| ||| gagCCGC-GUGCCACAUCCACa 2 19 26 46 [dm3:X:10727496-10727516:-] 0.5003 120 0 -20.36 -0.6631 MIMAT0005019 dme-miR-1006 43944 sbr gauacuuauucuUUAGCUUAAAu |||:|||||| agccguaaauucAAUUGAAUUUa 2 12 664 686 [dm3:X:10726856-10726878:-] 0.5299 139 6 -9.25 -0.1005 MIMAT0005027 dme-miR-1014 43944 sbr gaCGUUUACUUUUACUUAAAa |:|||| || ||||||| ccGUAAAUUCAAUUGAAUUUa 2 20 666 686 [dm3:X:10726856-10726876:-] 0.5299 167 7 -8.13 -1.1238

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sbr RAID00015918 dme-miR-305-5p miRNA MIMAT0000391 sbr mRNA 43944 Prediction 0.1828 sbr RAID00403101 dme-miR-iab-4-5p miRNA MIMAT0000412 sbr mRNA 43944 Prediction 0.1828 sbr RAID00454715 dme-miR-304-5p miRNA MIMAT0000390 sbr mRNA 43944 Prediction 0.1828 sbr RAID00745258 dme-miR-310-3p miRNA MIMAT0000402 sbr mRNA 43944 Prediction 0.1828 sbr RAID00809096 dme-mir-iab-4 miRNA MI0000432 sbr mRNA 43944 Prediction 0.1828 sbr RAID01178441 dme-miR-927-5p miRNA MIMAT0005501 sbr mRNA 43944 Prediction 0.1828 sbr RAID01321384 dme-miR-989-3p miRNA MIMAT0005506 sbr mRNA 43944 Prediction 0.1828 sbr RAID01341225 dme-miR-33-5p miRNA MIMAT0000342 sbr mRNA 43944 Prediction 0.1828 sbr RAID01622808 dme-miR-1014-3p miRNA MIMAT0005027 sbr mRNA 43944 Prediction 0.2202 sbr RAID01637336 dme-miR-1006-3p miRNA MIMAT0005019 sbr mRNA 43944 Prediction 0.2202 sbr RAID01820140 dme-miR-263a-5p miRNA MIMAT0000319 sbr mRNA 43944 Prediction 0.1828 sbr RAID02165030 dme-miR-184-3p miRNA MIMAT0000331 sbr mRNA 43944 Prediction 0.2202 sbr RAID02319874 dme-miR-316-5p miRNA MIMAT0000408 sbr mRNA 43944 Prediction 0.1828 sbr RAID02464936 dme-miR-963-5p miRNA MIMAT0005477 sbr mRNA 43944 Prediction 0.1828 sbr RAID02574354 dme-miR-986-5p miRNA MIMAT0005503 sbr mRNA 43944 Prediction 0.1828 sbr RAID02869548 dme-miR-962-5p miRNA MIMAT0005476 sbr mRNA 43944 Prediction 0.1828 sbr RAID02911499 dme-miR-1011-3p miRNA MIMAT0005024 sbr mRNA 43944 Prediction 0.1828 sbr RAID03016542 dme-miR-985-3p miRNA MIMAT0005502 sbr mRNA 43944 Prediction 0.1828 sbr RAID03152740 dme-miR-10-3p miRNA MIMAT0012531 sbr mRNA 43944 Prediction 0.1828 sbr RAID03235133 dme-miR-303-5p miRNA MIMAT0000388 sbr mRNA 43944 Prediction 0.1828 sbr RAID03320603 dme-miR-965-3p miRNA MIMAT0005480 sbr mRNA 43944 Prediction 0.2202 sbr RAID03741402 dme-miR-281-2-5p miRNA MIMAT0000349 sbr mRNA 43944 Prediction 0.1828 sbr RAID03997705 dme-miR-iab-4-3p miRNA MIMAT0000413 sbr mRNA 43944 Prediction 0.1828