DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39884 sina auaGUAAAGUAU-ACGUUGCAUUUAUGu ::||| || | |:|: |||||| uugUGUUUACUAUUCCGAUACAAAUACa 2 25 34 61 [dm3:3L:16850496-16850523:+] 0.5117 131 6 -8.43 -0.1080 MIMAT0000364 dme-miR-289 39884 sina ucagcguccgaggugaaUUUAUAAAu |||||||| guuugcagaaaaaugccAAAUAUUUu 2 10 442 467 [dm3:3L:16850904-16850929:+] 0.5072 145 7 -11.43 -0.4155 MIMAT0000364 dme-miR-289 39884 sina ucagcguccgaggugaauUUAUAAAu ||||||| uaacccacaaagaaaaguAAUAUUUg 2 9 928 953 [dm3:3L:16851390-16851415:+] 0.5628 140 7 -8.16 -0.7945 MIMAT0000364 dme-miR-289 39884 sina ucagcguccgAGGUGAAUUU-AUAAAu |: |: |||| ||||| ucuaguuuagUUAAUGUAAAUUAUUUu 2 17 840 866 [dm3:3L:16851302-16851328:+] 0.5628 120 0 -5.50 -1.0785 MIMAT0000388 dme-miR-303 39884 sina uggucaaaggacacUUUGGAUUu |||||||| uuaacgaaauuaacAAACCUAAu 2 10 906 928 [dm3:3L:16851368-16851390:+] 0.5628 145 7 -10.46 -1.0106 MIMAT0005481 dme-miR-966 39884 sina ggUGUGUCGGGUGUUGGGUGu ||| | |: |:||||||| uaACAAACCUAAUAACCCACa 2 20 916 936 [dm3:3L:16851378-16851398:+] 0.5628 163 7 -21.98 -1.2497 MIMAT0005488 dme-miR-972 39884 sina cgGAUUUA--UAAGCAUAA-CAUGu :| ||| :|||| ||| |||| ugUUUAAUCGGUUCG-AUUGGUACu 2 21 543 566 [dm3:3L:16851005-16851028:+] 0.5172 121 0 -14.06 -0.2738 MIMAT0005491 dme-miR-975 39884 sina uaugUC-CUACAUCCUUCACAAAu || ||||| ||||||| gcuaAGUGAUGU--UCAGUGUUUa 2 20 332 353 [dm3:3L:16850794-16850815:+] 0.4957 147 7 -15.99 -0.3986 MIMAT0005495 dme-miR-979 39884 sina aaucggacucaagcCCUUCUu |||||| ucccaaucgaaaacGGAAGAa 2 8 1241 1261 [dm3:3L:16851703-16851723:+] 0.5096 120 6 -11.44 -0.1067 MIMAT0005499 dme-miR-983 39884 sina aguaaucaAGCUUU-GCAUAAUa | |||| ||||||| aagcgaaaUGGAAAGCGUAUUAa 2 15 302 324 [dm3:3L:16850764-16850786:+] 0.4971 153 7 -10.85 -0.5081 MIMAT0005502 dme-miR-985 39884 sina acgggcugguaaccUUGUAAAc ||||||| uaaaaaaaaaagaaAACAUUUu 2 9 1064 1085 [dm3:3L:16851526-16851547:+] 0.5038 140 7 -4.72 -0.9776 MIMAT0011786 dme-miR-2280 39884 sina uauAAAAUAACGGUUCGAUUCu ||| ||| ::|||||||| uucUUUGAUUUUUAAGCUAAGa 2 20 264 285 [dm3:3L:16850726-16850747:+] 0.4971 171 7 -15.41 -1.0298 MIMAT0011787 dme-miR-2280* 39884 sina agUCA-AUCGAACC---UUCAUUUAa ||| |||:|| | | |||||| aaAGUCUAGUUUAGUUAAUGUAAAUu 2 21 836 861 [dm3:3L:16851298-16851323:+] 0.5628 130 6 -10.48 -0.1113 MIMAT0011791 dme-miR-2283 39884 sina uaacagcaUAAGUACUAUAAAAg || | ||||||| gcagaaaaAUGCCAAAUAUUUUu 2 16 446 468 [dm3:3L:16850908-16850930:+] 0.5072 143 7 -3.67 -0.4049 MIMAT0011791 dme-miR-2283 39884 sina uaacagcauaaguacuAUAAAAg |||||| uuuaguuaauguaaauUAUUUUa 2 8 845 867 [dm3:3L:16851307-16851329:+] 0.5628 120 6 -2.95 -0.2269 MIMAT0012196 dme-miR-2489 39884 sina ugACGUUU-AUGUUGUAUGUUAu ||:||| ||: :||||||| aaUGUAAAUUAUUUUAUACAAUa 2 21 852 874 [dm3:3L:16851314-16851336:+] 0.5628 163 7 -15.54 -1.1731 MIMAT0012199 dme-miR-2492 39884 sina aaacuuucgagagcugUUUUGUa |||||| acacuaaaaaaaaaagAAAACAu 2 8 1060 1082 [dm3:3L:16851522-16851544:+] 0.5038 120 6 -4.64 -0.1042 MIMAT0012201 dme-miR-2493 39884 sina ugcggagcgUGUUUAUGUGUGcc ||||| |||||| cacaaaauaACAAAAACACACua 3 15 1043 1065 [dm3:3L:16851505-16851527:+] 0.5038 142 0 -11.70 -0.2470 MIMAT0000105 dme-miR-1 39884 sina gaGGU-AUGA--AGAAAUG-UAAGGu :|| | || | ||||| ||||| uuUCAUUUCUUGUGUUUACUAUUCCg 2 21 25 50 [dm3:3L:16850487-16850512:+] 0.5117 122 0 -16.25 -0.8502 MIMAT0000332 dme-miR-274 39884 sina uaaugggcaaucacagccAGUGUUUu ||||||| uuuguucaugccaaaccaUCACAAAa 2 9 1024 1049 [dm3:3L:16851486-16851511:+] 0.5038 140 7 -11.69 -0.9189 MIMAT0000332 dme-miR-274 39884 sina uaaugggcaaucacagccaGUGUUUu |||||| auuaacaaaccuaauaaccCACAAAg 2 8 914 939 [dm3:3L:16851376-16851401:+] 0.5628 120 6 -11.36 -0.1031 MIMAT0000352 dme-miR-79 39884 sina uacgaaacCAUUAGAUCGAAAu ||||| ||||||| ucugcaccGUAAU-UAGCUUUu 2 15 1281 1301 [dm3:3L:16851743-16851763:+] 0.5096 156 7 -11.86 -0.6243 MIMAT0000365 dme-bantam 39884 sina uuAGUCGAA-AGUUUUACU-AGAGu |:: :|| | ||||||| |||| agUUGUUUUAUAAAAAUGAUUCUCu 2 22 150 174 [dm3:3L:16850612-16850636:+] 0.4971 132 0 -14.76 -0.8574 MIMAT0000390 dme-miR-304 39884 sina gagUGUAAAUGUUUAACUCUAAu |:|||| ::: ||||||| caaAUAUUUUUGG--UGAGAUUu 2 21 458 478 [dm3:3L:16850920-16850940:+] 0.5072 153 7 -10.86 -0.1634 MIMAT0000405 dme-miR-313 39884 sina agCCCGACACUUUUC-ACGUUAu | |:| | ||| | |||||| auGCGUUUUAAAACGUUGCAAUa 2 21 1531 1553 [dm3:3L:16851993-16852015:+] 0.5096 128 6 -9.89 -0.7005 MIMAT0000408 dme-miR-316 39884 sina gcGGUCAUUCGCCUUUUUCUGu :|: | || |||||||| uuUCGCAAUGC-UAAAAAGACa 2 21 1087 1107 [dm3:3L:16851549-16851569:+] 0.5038 146 7 -14.46 -0.6216 MIMAT0000408 dme-miR-316 39884 sina gcgGUCAUUCGCCUUUUUCUgu || ||| ||||||| acaCACUAA-AAAAAAAAGAaa 3 20 1058 1078 [dm3:3L:16851520-16851540:+] 0.5038 129 0 -8.83 -0.1081 MIMAT0005466 dme-miR-955 39884 sina cugugAGUUUGGAGACGUGCUAc ||| | :|| ||||||| gauuaUCACA-UUCGGCACGAUa 2 19 234 255 [dm3:3L:16850696-16850717:+] 0.4971 156 7 -15.91 -0.3186 MIMAT0005474 dme-miR-960 39884 sina cgauacGUUAGACCUUA-UGAGu :|||||| ||| |||| uagcgaUAAUCUGUAAUAACUCg 2 17 955 977 [dm3:3L:16851417-16851439:+] 0.5595 132 0 -16.55 -0.6806 MIMAT0005478 dme-miR-964 39884 sina uucaaUUCGAGGGGAUAAGAUu | | |:|:|||||||| uaaaaAUGAUUCUCUAUUCUAa 2 18 160 181 [dm3:3L:16850622-16850643:+] 0.4971 161 7 -16.32 -0.5869 MIMAT0005501 dme-miR-927 39884 sina ccauuucgcauccuUAAGAUUu ||||||| aaaaaugauucucuAUUCUAAg 2 9 161 182 [dm3:3L:16850623-16850644:+] 0.4971 140 7 -7.10 -0.3892 MIMAT0005501 dme-miR-927 39884 sina ccaUUUCGCA-----UCCUUAA-GAUUu ||||||| || |||| |||| uggAAAGCGUAUUAAAGCAAUUGCUAAg 2 20 310 337 [dm3:3L:16850772-16850799:+] 0.4957 126 0 -15.88 -0.5261 MIMAT0005504 dme-miR-987 39884 sina guaguUAGGUCUG--AUAAAU-GAAAu |||:: || || ||| |||| uaagcAUCUGCACCGUAAUUAGCUUUu 2 20 1275 1301 [dm3:3L:16851737-16851763:+] 0.5096 122 0 -10.43 -0.4973 MIMAT0005506 dme-miR-989 39884 sina caaggugaugcaguGUAGUGu |||||| uguucaugccaaacCAUCACa 2 8 1026 1046 [dm3:3L:16851488-16851508:+] 0.5038 120 6 -14.21 -0.1382 MIMAT0005507 dme-miR-137 39884 sina gaUGCACAUAAGAGUUCGUUAu | | |||| | ||||||| gaAAGCGUAU--UAAAGCAAUu 2 21 312 331 [dm3:3L:16850774-16850793:+] 0.4971 153 7 -12.18 -0.4901 MIMAT0005507 dme-miR-137 39884 sina gaugcacauaAGAGUUCGUUAu | | ||||||| cccccaaacaUAUAAAGCAAUg 2 13 1136 1157 [dm3:3L:16851598-16851619:+] 0.5291 144 7 -7.99 -0.8314

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sina RAID00015144 dme-miR-304-5p miRNA MIMAT0000390 sina mRNA 39884 Prediction 0.2202 sina RAID00050871 dme-miR-1009-3p miRNA MIMAT0005022 sina mRNA 39884 Prediction 0.1828 sina RAID00212818 dme-miR-311-3p miRNA MIMAT0000403 sina mRNA 39884 Prediction 0.1828 sina RAID00302023 dme-miR-987-5p miRNA MIMAT0005504 sina mRNA 39884 Prediction 0.1828 sina RAID00432278 dme-miR-316-5p miRNA MIMAT0000408 sina mRNA 39884 Prediction 0.2381 sina RAID00551735 dme-miR-964-5p miRNA MIMAT0005478 sina mRNA 39884 Prediction 0.2202 sina RAID00562798 dme-miR-92a-3p miRNA MIMAT0000334 sina mRNA 39884 Prediction 0.1828 sina RAID00962613 dme-miR-1013-3p miRNA MIMAT0005026 sina mRNA 39884 Prediction 0.1828 sina RAID01015647 dme-miR-263b-5p miRNA MIMAT0000362 sina mRNA 39884 Prediction 0.2202 sina RAID01033464 dme-miR-310-3p miRNA MIMAT0000402 sina mRNA 39884 Prediction 0.1828 sina RAID01122796 dme-miR-303-5p miRNA MIMAT0000388 sina mRNA 39884 Prediction 0.1828 sina RAID01212235 dme-miR-955-5p miRNA MIMAT0005466 sina mRNA 39884 Prediction 0.2202 sina RAID01556080 dme-miR-92b-3p miRNA MIMAT0000358 sina mRNA 39884 Prediction 0.1828 sina RAID01601844 dme-miR-985-3p miRNA MIMAT0005502 sina mRNA 39884 Prediction 0.1828 sina RAID01783769 dme-bantam-3p miRNA MIMAT0000365 sina mRNA 39884 Prediction 0.1828 sina RAID01853463 dme-miR-996-3p miRNA MIMAT0005515 sina mRNA 39884 Prediction 0.1828 sina RAID02267268 dme-miR-989-3p miRNA MIMAT0005506 sina mRNA 39884 Prediction 0.2202 sina RAID02347435 dme-miR-137-3p miRNA MIMAT0005507 sina mRNA 39884 Prediction 0.2202 sina RAID02594041 dme-miR-313-3p miRNA MIMAT0000405 sina mRNA 39884 Prediction 0.2202 sina RAID02667741 dme-miR-279-3p miRNA MIMAT0000341 sina mRNA 39884 Prediction 0.1828 sina RAID02692339 dme-miR-966-5p miRNA MIMAT0005481 sina mRNA 39884 Prediction 0.1828 sina RAID03113435 dme-miR-274-5p miRNA MIMAT0000332 sina mRNA 39884 Prediction 0.2202 sina RAID03156295 dme-miR-975-5p miRNA MIMAT0005491 sina mRNA 39884 Prediction 0.1828 sina RAID03160770 dme-miR-927-5p miRNA MIMAT0005501 sina mRNA 39884 Prediction 0.2202 sina RAID03215118 dme-miR-286-3p miRNA MIMAT0000359 sina mRNA 39884 Prediction 0.1828 sina RAID03429730 dme-miR-312-3p miRNA MIMAT0000404 sina mRNA 39884 Prediction 0.1828 sina RAID03449050 dme-miR-979-3p miRNA MIMAT0005495 sina mRNA 39884 Prediction 0.1828 sina RAID03531923 dme-miR-958-3p miRNA MIMAT0005471 sina mRNA 39884 Prediction 0.1828 sina RAID03824146 dme-miR-79-3p miRNA MIMAT0000352 sina mRNA 39884 Prediction 0.2202 sina RAID03828042 dme-miR-1-3p miRNA MIMAT0000105 sina mRNA 39884 Prediction 0.1828 sina RAID03949179 dme-miR-960-5p miRNA MIMAT0005474 sina mRNA 39884 Prediction 0.1828