DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 44014 sol ucagcgUC-CG-AGGUGA-AUUUAUAAAu || || |||| | | ||||| | aauuuaAGUGCAUCCAAUAUUAAUAUGUg 2 21 413 441 [dm3:X:21228874-21228902:+] 0.5905 125 0 -10.59 -0.1198 MIMAT0005494 dme-miR-978 44014 sol gaCGUUAAAUGCCGUGACCUGu ||:| || | ||||||| caGCGA-GGAC-GAACUGGACa 2 21 1798 1817 [dm3:X:21226993-21227012:+] 0.7972 144 7 -23.29 -0.4173 MIMAT0005018 dme-miR-1005 44014 sol gaCGCUU--AAU-UUCUAAGGUCu |||:| ||| ||||||| agGCGGAGUUUACCCUAUUCCAGg 2 20 2262 2285 [dm3:X:21227529-21227552:+] 0.7455 145 7 -17.18 -0.1455 MIMAT0005018 dme-miR-1005 44014 sol gaCGCUUAAUUUCUAA-GGUCu |:||| | : |||| |||| auGUGAAAU-GUGAUUGCCAGg 2 20 2730 2750 [dm3:X:21228127-21228147:+] 0.8095 121 0 -17.68 -0.4053 MIMAT0012199 dme-miR-2492 44014 sol aaacuuucgagaGCUGUUUUGUa :|:||||||| gcguugaccaagUGGCAAAACAu 2 12 1199 1221 [dm3:X:21226394-21226416:+] 0.7241 147 7 -15.29 -0.1503 MIMAT0012531 dme-miR-10-3p 44014 sol uuuggagagaucuugGCUUAAAc :|||||| uauagauauguauugUGAAUUUa 2 9 396 418 [dm3:X:21228857-21228879:+] 0.5905 124 6 -5.09 -0.1288 MIMAT0000120 dme-miR-14 44014 sol auccucUCUCUUUUUCUGAcu | | | ||||||| uguuuuAAAAAUAAAGACUac 3 16 445 465 [dm3:X:21228906-21228926:+] 0.5677 131 0 -5.89 -0.4392 MIMAT0000341 dme-miR-279 44014 sol aauuacucacaccuAGAUCAGu ||||||| aauucuacccgucuUCUAGUCg 2 9 98 119 [dm3:X:21228559-21228580:+] 0.4786 140 7 -11.26 -0.4719 MIMAT0000342 dme-miR-33 44014 sol guUACGCUGAUGUUACG-UGGa | || |:| |:|||| ||| ugACGCAAUUUCGAUGCUACCc 2 20 30 51 [dm3:X:21228491-21228512:+] 0.4786 127 0 -14.04 -0.1669 MIMAT0000346 dme-miR-282 44014 sol ugucuguuuCGGAUCAUCUCCGAU-CUAa | :||| || ||||| ||| cuguguuuuGAUUAG-AGCGGCUAUGAUu 2 20 360 387 [dm3:X:21228821-21228848:+] 0.5381 125 0 -15.61 -0.3759 MIMAT0000359 dme-miR-286 44014 sol ucgugcucacaagccAGAUCAGu ||||||| caauucuacccgucuUCUAGUCg 2 9 97 119 [dm3:X:21228558-21228580:+] 0.4786 140 7 -12.83 -0.4753 MIMAT0000398 dme-miR-307 44014 sol gagugaguuccuCCAACACu ||||||| cugggcgggucuGGUUGUGa 2 9 2677 2696 [dm3:X:21228074-21228093:+] 0.8095 140 7 -17.28 -0.4137 MIMAT0000408 dme-miR-316 44014 sol gcggucauucgccuuUUUCUGu |||||| uauuguuuuaaaaauAAAGACu 2 8 442 463 [dm3:X:21228903-21228924:+] 0.5677 120 6 -9.33 -0.1704 MIMAT0000408 dme-miR-316 44014 sol gcgguCAUU--CGCCUUUU-UCUGu ||:| |:|||||| |||| ugguuGUGAUGGUGGAAAAUAGACa 2 18 2688 2712 [dm3:X:21228085-21228109:+] 0.8095 128 0 -19.75 -0.7055 MIMAT0005466 dme-miR-955 44014 sol cugUGAGUUUGGAGACGUGCUAc :|| ||: ||| ||||||| aagGCU-AAGGCUCGGCACGAUu 2 21 320 341 [dm3:X:21228781-21228802:+] 0.5149 162 7 -19.67 -0.1381 MIMAT0005466 dme-miR-955 44014 sol cuGUGAGUU--UGGA---GACGU-GCUAc ::||:|| ||:| ||||| |||| ugUGCUUAACUACUUCGACUGCAUCGAUa 2 22 2131 2159 [dm3:X:21227398-21227426:+] 0.7727 123 0 -15.68 -0.2826 MIMAT0005468 dme-miR-193 44014 sol caacccugaaucaUCCGGUCAu |||||||| agcauuccacuacAGGCCAGUa 2 10 1763 1784 [dm3:X:21226958-21226979:+] 0.8106 145 7 -16.73 -0.4405 MIMAT0005484 dme-miR-968 44014 sol guugggaaauUACCUA-UGAUGAAu :|| | ||||||| guucgaggauGUGCUUAACUACUUc 2 15 2122 2146 [dm3:X:21227389-21227413:+] 0.7727 141 7 -10.65 -0.2533 MIMAT0005512 dme-miR-993 44014 sol ucuauggacaUCUCUGCUCGAAg | || ||||||| ugucgcgacaAUAG-CGAGCUUu 2 14 1232 1253 [dm3:X:21226427-21226448:+] 0.7517 143 7 -12.33 -0.2007 MIMAT0005515 dme-miR-996 44014 sol ucugcucguacuuuAGAUCAGu ||||||| aauucuacccgucuUCUAGUCg 2 9 98 119 [dm3:X:21228559-21228580:+] 0.4786 140 7 -12.30 -0.4753 MIMAT0005019 dme-miR-1006 44014 sol gaUACUUAUUCUUUA-GCUUAAAu || :||| | | | :|||||| auAUAGAUAUGUAUUGUGAAUUUa 2 22 395 418 [dm3:X:21228856-21228879:+] 0.5905 144 6 -8.70 -0.1275 MIMAT0005019 dme-miR-1006 44014 sol gaUACUUAUUCUU-UAGC-UUAAAu |||:||:: |: : || ||||| ggAUGGAUGGCAGUGACGCAAUUUc 2 22 17 41 [dm3:X:21228478-21228502:+] 0.4786 124 0 -10.50 -0.1500 MIMAT0005024 dme-miR-1011 44014 sol gacgcucgcuaaacuuGGUUAUu |||||| gugaauuuaagugcauCCAAUAu 2 8 410 432 [dm3:X:21228871-21228893:+] 0.5905 120 6 -9.16 -0.1522 MIMAT0005027 dme-miR-1014 44014 sol gacgUUUAC-UUUUACUUAAAa | ||| | :||||||| auagAUAUGUAUUGUGAAUUUa 2 18 397 418 [dm3:X:21228858-21228879:+] 0.5905 148 7 -7.53 -1.0963 MIMAT0005027 dme-miR-1014 44014 sol gacgUUUAC-UUUUACUUAAAa | ||| | :||||||| auagAUAUGUAUUGUGAAUUUa 2 18 3392 3413 [dm3:X:21228858-21228879:+] 0.5905 148 7 -7.53 -0.4949 MIMAT0005030 dme-miR-1017 44014 sol ccuacucaaacccauCUCGAAAg ||||||| ugucgcgacaauagcGAGCUUUu 2 9 1232 1254 [dm3:X:21226427-21226449:+] 0.7517 140 7 -8.34 -0.1520

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sol RAID00039265 dme-miR-1014-3p miRNA MIMAT0005027 sol mRNA 44014 Prediction 0.2202 sol RAID00062237 dme-miR-1006-3p miRNA MIMAT0005019 sol mRNA 44014 Prediction 0.2202 sol RAID00068166 dme-miR-307a-3p miRNA MIMAT0000398 sol mRNA 44014 Prediction 0.1828 sol RAID00282664 dme-miR-193-3p miRNA MIMAT0005468 sol mRNA 44014 Prediction 0.1828 sol RAID00404320 dme-miR-975-5p miRNA MIMAT0005491 sol mRNA 44014 Prediction 0.1828 sol RAID00419781 dme-miR-993-3p miRNA MIMAT0005512 sol mRNA 44014 Prediction 0.1828 sol RAID00528099 dme-miR-11-3p miRNA MIMAT0000116 sol mRNA 44014 Prediction 0.1828 sol RAID00703639 dme-miR-316-5p miRNA MIMAT0000408 sol mRNA 44014 Prediction 0.1828 sol RAID00951590 dme-miR-1017-3p miRNA MIMAT0005030 sol mRNA 44014 Prediction 0.1828 sol RAID00960303 dme-miR-14-3p miRNA MIMAT0000120 sol mRNA 44014 Prediction 0.1828 sol RAID01058196 dme-miR-282-5p miRNA MIMAT0000346 sol mRNA 44014 Prediction 0.1828 sol RAID01176730 dme-miR-6-3p miRNA MIMAT0000111 sol mRNA 44014 Prediction 0.1828 sol RAID01300760 dme-miR-1011-3p miRNA MIMAT0005024 sol mRNA 44014 Prediction 0.1828 sol RAID01315242 dme-miR-286-3p miRNA MIMAT0000359 sol mRNA 44014 Prediction 0.2381 sol RAID01564304 dme-miR-10-3p miRNA MIMAT0012531 sol mRNA 44014 Prediction 0.1828 sol RAID01586301 dme-miR-2c-3p miRNA MIMAT0000411 sol mRNA 44014 Prediction 0.1828 sol RAID02094355 dme-miR-279-3p miRNA MIMAT0000341 sol mRNA 44014 Prediction 0.2381 sol RAID02240814 dme-miR-34-5p miRNA MIMAT0000350 sol mRNA 44014 Prediction 0.1828 sol RAID02294369 dme-miR-955-5p miRNA MIMAT0005466 sol mRNA 44014 Prediction 0.2202 sol RAID02475706 dme-miR-13b-3p miRNA MIMAT0000119 sol mRNA 44014 Prediction 0.1828 sol RAID02881363 dme-miR-13a-3p miRNA MIMAT0000118 sol mRNA 44014 Prediction 0.1828 sol RAID03103568 dme-miR-2b-3p miRNA MIMAT0000107 sol mRNA 44014 Prediction 0.1828 sol RAID03265097 dme-miR-996-3p miRNA MIMAT0005515 sol mRNA 44014 Prediction 0.2455 sol RAID03540316 dme-miR-2a-3p miRNA MIMAT0000106 sol mRNA 44014 Prediction 0.1828 sol RAID03832505 dme-miR-33-5p miRNA MIMAT0000342 sol mRNA 44014 Prediction 0.1828 sol RAID04058710 dme-miR-968-5p miRNA MIMAT0005484 sol mRNA 44014 Prediction 0.1828