DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 41988 ss gccccgcucucuUACUAUUcc :|||||| auuuauuuuacuGUGAUAAuu 3 10 184 204 [dm3:3R:12201051-12201071:-] 0.5893 121 0 -3.45 -0.1246 MIMAT0000343 dme-miR-280 41988 ss auaGUAA---AGUAUACGUUGCAUUUAUGu |||| |:||| | | |||||| aaaCAUUUACUUAUAAACUAAAAAAAUACa 2 25 765 794 [dm3:3R:12200461-12200490:-] 0.6112 127 6 -9.98 -0.2832 MIMAT0000343 dme-miR-280 41988 ss auaGUAA---AGUAUACGUUGCAUUUAUGu |||| |:||| | | |||||| aaaCAUUUACUUAUAAACUAAAAAAAUACa 2 25 1458 1487 [dm3:3R:12200461-12200490:-] 0.6112 127 6 -9.98 -0.1955 MIMAT0000344 dme-miR-281-1* 41988 ss ugacagcugccuguCGAGAGAa ||||||| gugcacccaaguguGCUCUCUc 2 9 97 118 [dm3:3R:12201830-12201851:-] 0.5354 140 7 -16.22 -0.1808 MIMAT0000364 dme-miR-289 41988 ss ucAGCGUCCGAGGUGAAU-UUAUAAAu | |:| | |::|: || ||||||| gaUGGUA-GAUUUAUGUAUAAUAUUUu 2 25 808 833 [dm3:3R:12200422-12200447:-] 0.6112 157 7 -9.46 -0.8904 MIMAT0000364 dme-miR-289 41988 ss ucagcguccgaggugaaUUUAUAAAu |||||||| cugucagcuaauaaacgAAAUAUUUa 2 10 973 998 [dm3:3R:12200257-12200282:-] 0.5814 145 7 -11.27 -1.2640 MIMAT0000364 dme-miR-289 41988 ss ucagcguccgaggugaauuUAUAAAu |||||| aucauguauucaaaaacauAUAUUUa 2 8 934 959 [dm3:3R:12200296-12200321:-] 0.5814 120 6 -7.21 -0.2408 MIMAT0000364 dme-miR-289 41988 ss ucAGCGUCCGAGGUGAAU-UUAUAAAu | |:| | |::|: || ||||||| gaUGGUA-GAUUUAUGUAUAAUAUUUu 2 25 1501 1526 [dm3:3R:12200422-12200447:-] 0.6112 157 7 -9.46 -0.7436 MIMAT0000364 dme-miR-289 41988 ss ucagcguccgaggugaaUUUAUAAAu |||||||| cugucagcuaauaaacgAAAUAUUUa 2 10 1666 1691 [dm3:3R:12200257-12200282:-] 0.5814 145 7 -11.27 -1.2119 MIMAT0000364 dme-miR-289 41988 ss ucagcguccgaggugaauuUAUAAAu |||||| aucauguauucaaaaacauAUAUUUa 2 8 1627 1652 [dm3:3R:12200296-12200321:-] 0.5814 120 6 -7.21 -0.1643 MIMAT0000388 dme-miR-303 41988 ss ugGUCAAAGGACACUUUGGAUUu || || |:| | || |||| aaCAUUUACUUAU--AAACUAAa 2 22 766 786 [dm3:3R:12200469-12200489:-] 0.6112 122 0 -6.84 -0.1196 MIMAT0005464 dme-miR-iab-4as-3p 41988 ss auuugCAUAUGACUUACAUAgg ||| |:| |||||| ugaugGUAGAUU-UAUGUAUaa 3 18 807 827 [dm3:3R:12200428-12200448:-] 0.6112 131 0 -7.55 -0.1380 MIMAT0005464 dme-miR-iab-4as-3p 41988 ss auUUGCAUAUG--ACU--UA-CAUAGg ||:||: || ||| || ||||| aaAAUGUGGACUAUGACUAUCGUAUCu 2 21 47 73 [dm3:3R:12201182-12201208:-] 0.6164 122 0 -13.12 -0.8045 MIMAT0005464 dme-miR-iab-4as-3p 41988 ss auUUGCAUAUG--ACU--UA-CAUAGg ||:||: || ||| || ||||| aaAAUGUGGACUAUGACUAUCGUAUCu 2 21 740 766 [dm3:3R:12201182-12201208:-] 0.6164 122 0 -13.12 -0.5594 MIMAT0005481 dme-miR-966 41988 ss ggugugucgggugUUGGGUGu ||||||| ugaaaccaauagaAACCCACu 2 9 73 93 [dm3:3R:12201855-12201875:-] 0.4883 140 7 -18.71 -0.4637 MIMAT0005488 dme-miR-972 41988 ss cggAUUUAUA-AGCAUAACAUGu || |||| |:||||||||: gcaUACAUAUAUUGUAUUGUAUg 2 20 705 727 [dm3:3R:12200528-12200550:-] 0.6112 158 0 -13.31 -0.1139 MIMAT0005488 dme-miR-972 41988 ss cggaUUUAUAAGCAUAACAUgu | |||||: |||||| aaacAUAUAUUUAAAUUGUAga 3 19 947 968 [dm3:3R:12200287-12200308:-] 0.5814 142 0 -8.02 -0.2671 MIMAT0005488 dme-miR-972 41988 ss cggaUUUAUAAGCAUAACAUgu | |||||: |||||| aaacAUAUAUUUAAAUUGUAga 3 19 1640 1661 [dm3:3R:12200287-12200308:-] 0.5814 142 0 -8.02 -0.1836 MIMAT0005502 dme-miR-985 41988 ss acGGGCUGGUAACCUUGUAAAc |||| ||| ||||||| cgCCCG--CAUAAAAACAUUUa 2 21 754 773 [dm3:3R:12200482-12200501:-] 0.6112 153 7 -15.41 -1.2762 MIMAT0005502 dme-miR-985 41988 ss acgGGCUGGUAACCUUGUAAAc |: |: | | ||:|||| cagCUAAUAAACGAAAUAUUUa 2 20 977 998 [dm3:3R:12200257-12200278:-] 0.5814 131 0 -3.96 -0.1063 MIMAT0005502 dme-miR-985 41988 ss acGGGCUGGUAACCUUGUAAAc |||| ||| ||||||| cgCCCG--CAUAAAAACAUUUa 2 21 1447 1466 [dm3:3R:12200482-12200501:-] 0.6112 153 7 -15.41 -1.2295 MIMAT0005509 dme-miR-991 41988 ss ugAAAGGUUUGA--UG--UUGAAAUu | |||| |:| |: ||||||| ugUAUCCAUAUUUAAUUGAACUUUAg 2 21 593 618 [dm3:3R:12200637-12200662:-] 0.6112 150 7 -11.79 -0.6624 MIMAT0005509 dme-miR-991 41988 ss ugAAAGGUU-UGAUGUUGAAAUu ||| :|: :| | ||||||| ggUUUGUAGCGCCA-AACUUUAg 2 21 473 494 [dm3:3R:12200761-12200782:-] 0.5893 149 7 -10.29 -0.2982 MIMAT0005509 dme-miR-991 41988 ss ugAAAGGUUUGA--UG--UUGAAAUu | |||| |:| |: ||||||| ugUAUCCAUAUUUAAUUGAACUUUAg 2 21 1286 1311 [dm3:3R:12200637-12200662:-] 0.6112 150 7 -11.79 -0.5128 MIMAT0005509 dme-miR-991 41988 ss ugAAAGGUU-UGAUGUUGAAAUu ||| :|: :| | ||||||| ggUUUGUAGCGCCA-AACUUUAg 2 21 1166 1187 [dm3:3R:12200761-12200782:-] 0.5893 149 7 -10.29 -0.2050 MIMAT0010206 dme-miR-995* 41988 ss gcgucgAGGGUGUAUUAAGCCc |::::| ||||||| auaauaUUUUGC--AAUUCGGc 2 17 824 843 [dm3:3R:12200412-12200431:-] 0.6112 141 7 -10.85 -0.4039 MIMAT0010206 dme-miR-995* 41988 ss gcgucgAGGGUGUAUUAAGCCc |::::| ||||||| auaauaUUUUGC--AAUUCGGc 2 17 1517 1536 [dm3:3R:12200412-12200431:-] 0.6112 141 7 -10.85 -0.2888 MIMAT0011784 dme-miR-2279* 41988 ss uuaAAGUGUGUGUCUAUAAAUu |||| | ||| ||||||| guaUUCAAAAACAUAUAUUUAa 2 20 939 960 [dm3:3R:12200295-12200316:-] 0.5814 171 7 -11.98 -1.2647 MIMAT0011784 dme-miR-2279* 41988 ss uuaaAGUGUGUG-UCUAUAAAUu | |:| || | ||||||| cagcUAAUAAACGAAAUAUUUAa 2 19 977 999 [dm3:3R:12200256-12200278:-] 0.5814 153 7 -7.00 -1.2905 MIMAT0011784 dme-miR-2279* 41988 ss uuaAAGUGUGUGUCUAUAAAUu | | :::|: ||||||| agaUGCUUGUAUCCAUAUUUAa 2 20 586 607 [dm3:3R:12200648-12200669:-] 0.6112 147 7 -6.05 -0.8379 MIMAT0011784 dme-miR-2279* 41988 ss uuaaaGUGUGUGUCUAUAA-AUu |:||:||| ||||| || auaccCGCAUACAUAUAUUGUAu 2 18 699 721 [dm3:3R:12200534-12200556:-] 0.6112 133 0 -12.33 -0.6483 MIMAT0011784 dme-miR-2279* 41988 ss uuaaagugugugucuAUAAAUu |||||| agcagaaauaauuucUAUUUAu 2 8 168 189 [dm3:3R:12201066-12201087:-] 0.5489 120 6 -4.30 -0.1193 MIMAT0011784 dme-miR-2279* 41988 ss uuAAAGUGUGUGUCUA-UAAAUu |||:|| ::: ||| ||||| uaUUUUAC-UGU-GAUAAUUUAu 2 21 187 207 [dm3:3R:12201048-12201068:-] 0.5893 120 0 -7.37 -0.9536 MIMAT0011784 dme-miR-2279* 41988 ss uuaAAGUGUGUGUCUAUAAAUu |||| | ||| ||||||| guaUUCAAAAACAUAUAUUUAa 2 20 1632 1653 [dm3:3R:12200295-12200316:-] 0.5814 171 7 -11.98 -1.2129 MIMAT0011784 dme-miR-2279* 41988 ss uuaaAGUGUGUG-UCUAUAAAUu | |:| || | ||||||| cagcUAAUAAACGAAAUAUUUAa 2 19 1670 1692 [dm3:3R:12200256-12200278:-] 0.5814 153 7 -7.00 -1.2503 MIMAT0011784 dme-miR-2279* 41988 ss uuaAAGUGUGUGUCUAUAAAUu | | :::|: ||||||| agaUGCUUGUAUCCAUAUUUAa 2 20 1279 1300 [dm3:3R:12200648-12200669:-] 0.6112 147 7 -6.05 -0.6873 MIMAT0011784 dme-miR-2279* 41988 ss uuaaaGUGUGUGUCUAUAA-AUu |:||:||| ||||| || auaccCGCAUACAUAUAUUGUAu 2 18 1392 1414 [dm3:3R:12200534-12200556:-] 0.6112 133 0 -12.33 -0.4996 MIMAT0011784 dme-miR-2279* 41988 ss uuAAAGUGUGUGUCUA-UAAAUu |||:|| ::: ||| ||||| uaUUUUAC-UGU-GAUAAUUUAu 2 21 880 900 [dm3:3R:12201048-12201068:-] 0.5893 120 0 -7.37 -0.7960 MIMAT0011786 dme-miR-2280 41988 ss uauaaAAUA-ACGGUUCGAUUcu | || ||:| |||||| guagaUAAUCUGUC-AGCUAAua 3 18 964 985 [dm3:3R:12200270-12200291:-] 0.5814 130 0 -8.48 -0.1265 MIMAT0011791 dme-miR-2283 41988 ss uaacagcAUAAGUACUAUAAAAg ||| :|| ||||||| guagauuUAUGUAUAAUAUUUUg 2 17 812 834 [dm3:3R:12200421-12200443:-] 0.6112 160 7 -7.37 -0.7475 MIMAT0011791 dme-miR-2283 41988 ss uaacAGCAUAAGUACUAUAAAag || | ||| |||||| guauUCAAAAACAU-AUAUUUaa 3 20 939 960 [dm3:3R:12200295-12200316:-] 0.5814 129 0 -5.11 -0.2143 MIMAT0011791 dme-miR-2283 41988 ss uaacagcAUAAGUACUAUAAAag || |: |||||| cagcuaaUAAACGAAAUAUUUaa 3 17 977 999 [dm3:3R:12200256-12200278:-] 0.5814 124 0 -2.73 -0.3355 MIMAT0011791 dme-miR-2283 41988 ss uaacagcAUAAGUACUAUAAAAg ||| :|| ||||||| guagauuUAUGUAUAAUAUUUUg 2 17 1505 1527 [dm3:3R:12200421-12200443:-] 0.6112 160 7 -7.37 -0.5948 MIMAT0011791 dme-miR-2283 41988 ss uaacAGCAUAAGUACUAUAAAag || | ||| |||||| guauUCAAAAACAU-AUAUUUaa 3 20 1632 1653 [dm3:3R:12200295-12200316:-] 0.5814 129 0 -5.11 -0.1451 MIMAT0011791 dme-miR-2283 41988 ss uaacagcAUAAGUACUAUAAAag || |: |||||| cagcuaaUAAACGAAAUAUUUaa 3 17 1670 1692 [dm3:3R:12200256-12200278:-] 0.5814 124 0 -2.73 -0.2351 MIMAT0012196 dme-miR-2489 41988 ss ugACGUUU-A-UGUUGUAUGUUau | :||| | | || |||||| cuUAUAAACUAAAAAAAUACAAga 3 21 774 797 [dm3:3R:12200458-12200481:-] 0.6112 134 0 -7.24 -0.2552 MIMAT0012196 dme-miR-2489 41988 ss ugaCGUUUAUGU---UGUAUGU-UAu ||::|||:| :|||||| || uaaGCGGAUAUACCCGCAUACAUAUa 2 20 690 715 [dm3:3R:12200540-12200565:-] 0.6112 126 0 -16.26 -0.9796 MIMAT0012196 dme-miR-2489 41988 ss ugACGUUU-A-UGUUGUAUGUUau | :||| | | || |||||| cuUAUAAACUAAAAAAAUACAAga 3 21 1467 1490 [dm3:3R:12200458-12200481:-] 0.6112 134 0 -7.24 -0.1748 MIMAT0012196 dme-miR-2489 41988 ss ugaCGUUUAUGU---UGUAUGU-UAu ||::|||:| :|||||| || uaaGCGGAUAUACCCGCAUACAUAUa 2 20 1383 1408 [dm3:3R:12200540-12200565:-] 0.6112 126 0 -16.26 -0.8441 MIMAT0012197 dme-miR-2490 41988 ss aaCGUUGGACGA---A-AUAG-CGAAGu |||:|:|||| | ||| ||||| caGCAGCUUGCUGAAUGGAUCGGCUUCa 2 22 309 336 [dm3:3R:12201612-12201639:-] 0.5824 127 0 -27.11 -0.1286 MIMAT0012198 dme-miR-2491 41988 ss ucGUUGACGUUUCCGUUGUCGc |||| |: | |||||||| agCAACAGUCACUGCAACAGCa 2 21 482 503 [dm3:3R:12201445-12201466:-] 0.6773 164 7 -19.60 -0.5548 MIMAT0012199 dme-miR-2492 41988 ss aaacUUUCGAG-AGCU--GUUUUGUa ||||| | | | ||||||| acguAAAGCGCGCCUAUCCAAAACAa 2 20 1040 1065 [dm3:3R:12200190-12200215:-] 0.5814 149 7 -11.28 -0.4451 MIMAT0012199 dme-miR-2492 41988 ss aaacuuucgagagcuGUUUUGUa ||||||| cgucaacaaaaaaucCAAAACAg 2 9 243 265 [dm3:3R:12200990-12201012:-] 0.5893 140 7 -5.63 -0.3526 MIMAT0012199 dme-miR-2492 41988 ss aaacuuucgagagcugUUUUGUa |||||| auugaucauguauucaAAAACAu 2 8 930 952 [dm3:3R:12200303-12200325:-] 0.5814 120 6 -9.72 -0.1092 MIMAT0012199 dme-miR-2492 41988 ss aaacUUUCGAG-AGCU--GUUUUGUa ||||| | | | ||||||| acguAAAGCGCGCCUAUCCAAAACAa 2 20 1733 1758 [dm3:3R:12200190-12200215:-] 0.5814 149 7 -11.28 -0.3220 MIMAT0012199 dme-miR-2492 41988 ss aaacuuucgagagcuGUUUUGUa ||||||| cgucaacaaaaaaucCAAAACAg 2 9 936 958 [dm3:3R:12200990-12201012:-] 0.5893 140 7 -5.63 -0.2392 MIMAT0012213 dme-miR-2499 41988 ss augccugcacuuacAGUAGGCGUa ||||||||| caccacucgcagcaUCAUCCGCAu 2 11 532 555 [dm3:3R:12201393-12201416:-] 0.6911 150 7 -18.22 -0.2521 MIMAT0012215 dme-miR-2500 41988 ss gaCUCCAGGUGUGUGUUUUAGg || | : :| |:|||||| acGAAAUAUUUA-AUAAAAUCu 2 21 987 1007 [dm3:3R:12200248-12200268:-] 0.5814 130 6 -8.07 -0.2154 MIMAT0012215 dme-miR-2500 41988 ss gaCUCCAGGUGUGUGUUUUAGg || | : :| |:|||||| acGAAAUAUUUA-AUAAAAUCu 2 21 1680 1700 [dm3:3R:12200248-12200268:-] 0.5814 130 6 -8.07 -0.1459 MIMAT0012216 dme-miR-2501 41988 ss aaucggGUCCGUGAG-GUUUGAAUg || :|||: :||||| | uaaaaaCAUUUACUUAUAAACUAAa 2 19 762 786 [dm3:3R:12200469-12200493:-] 0.6112 121 0 -8.82 -0.1563 MIMAT0012216 dme-miR-2501 41988 ss aaucggGUCCGUGAG-GUUUGAAUg || :|||: :||||| | uaaaaaCAUUUACUUAUAAACUAAa 2 19 1455 1479 [dm3:3R:12200469-12200493:-] 0.6112 121 0 -8.82 -0.1041 MIMAT0012217 dme-miR-2501* 41988 ss uuucUUUCAAACUAACGUUCUca || | | ||||||||| acguAACGAGU-AUUGCAAGAua 3 20 619 640 [dm3:3R:12200615-12200636:-] 0.6112 137 0 -10.97 -0.1767 MIMAT0012217 dme-miR-2501* 41988 ss uuucuuucaaacuaacGUUCUCa |||||| auaaacuaaaaaaauaCAAGAGa 2 8 777 799 [dm3:3R:12200456-12200478:-] 0.6112 120 6 -8.52 -0.4495 MIMAT0012217 dme-miR-2501* 41988 ss uuucUUUCAAACUAACGUUCUca || | | ||||||||| acguAACGAGU-AUUGCAAGAua 3 20 1312 1333 [dm3:3R:12200615-12200636:-] 0.6112 137 0 -10.97 -0.1184 MIMAT0012217 dme-miR-2501* 41988 ss uuucuuucaaacuaacGUUCUCa |||||| auaaacuaaaaaaauaCAAGAGa 2 8 1470 1492 [dm3:3R:12200456-12200478:-] 0.6112 120 6 -8.52 -0.3257 MIMAT0000106 dme-miR-2a 41988 ss cgaguaguuUCGACCGACACUAu | :| ||||||| uuucuauuuAUUUUACUGUGAUa 2 15 179 201 [dm3:3R:12201054-12201076:-] 0.5893 142 7 -14.71 -1.2854 MIMAT0000106 dme-miR-2a 41988 ss cgaguaguuUCGACCGACACUAu | :| ||||||| uuucuauuuAUUUUACUGUGAUa 2 15 872 894 [dm3:3R:12201054-12201076:-] 0.5893 142 7 -14.71 -1.2366 MIMAT0000107 dme-miR-2b 41988 ss cgAGGAGUUUCGACCGACACUAu ||: : | :| ||||||| uuUCUAUUUAUUUUACUGUGAUa 2 22 179 201 [dm3:3R:12201054-12201076:-] 0.5893 145 7 -13.78 -1.2854 MIMAT0000107 dme-miR-2b 41988 ss cgAGGAGUUUCGACCGACACUAu ||: : | :| ||||||| uuUCUAUUUAUUUUACUGUGAUa 2 22 872 894 [dm3:3R:12201054-12201076:-] 0.5893 145 7 -13.78 -1.2366 MIMAT0000109 dme-miR-4 41988 ss agUUACCAACAGAUCG-AAAUa |:|| || |||| |||| agAGUGCUUAAGUAGCAUUUAa 2 20 555 576 [dm3:3R:12200679-12200700:-] 0.6112 123 0 -7.31 -0.9503 MIMAT0000109 dme-miR-4 41988 ss agUUACCAACAGAUCG-AAAUa |:|| || |||| |||| agAGUGCUUAAGUAGCAUUUAa 2 20 1248 1269 [dm3:3R:12200679-12200700:-] 0.6112 123 0 -7.31 -0.8103 MIMAT0000111 dme-miR-6 41988 ss uuuuucuugucGGUGACACUAu ::|||||||| uucuauuuauuUUACUGUGAUa 2 12 180 201 [dm3:3R:12201054-12201075:-] 0.5893 147 7 -14.39 -1.2854 MIMAT0000111 dme-miR-6 41988 ss uuuuucuugucGGUGACACUAu ::|||||||| uucuauuuauuUUACUGUGAUa 2 12 873 894 [dm3:3R:12201054-12201075:-] 0.5893 147 7 -14.39 -1.2366 MIMAT0000112 dme-miR-7 41988 ss uguuguuuuagugaucAGAAGGu |||||| gacuaugacuaucguaUCUUCCa 2 8 55 77 [dm3:3R:12201178-12201200:-] 0.6164 120 6 -13.63 -0.1110 MIMAT0000113 dme-miR-8 41988 ss cugUAGAAA--UGGACUG-UCAUAAu | |||| || | || |||||| uugAACUUUAGACGUAACGAGUAUUg 2 21 608 633 [dm3:3R:12200622-12200647:-] 0.6112 127 6 -11.27 -0.7943 MIMAT0000113 dme-miR-8 41988 ss cuGUAGAAAUGGACU-GU-CAUAAu |||: |: :||| || ||||| agCAUUGAUGAUUGAUCAUGUAUUc 2 22 920 944 [dm3:3R:12200311-12200335:-] 0.5814 124 0 -11.30 -1.0856 MIMAT0000113 dme-miR-8 41988 ss cugUAGAAA--UGGACUG-UCAUAAu | |||| || | || |||||| uugAACUUUAGACGUAACGAGUAUUg 2 21 1301 1326 [dm3:3R:12200622-12200647:-] 0.6112 127 6 -11.27 -0.6420 MIMAT0000113 dme-miR-8 41988 ss cuGUAGAAAUGGACU-GU-CAUAAu |||: |: :||| || ||||| agCAUUGAUGAUUGAUCAUGUAUUc 2 22 1613 1637 [dm3:3R:12200311-12200335:-] 0.5814 124 0 -11.30 -0.9720 MIMAT0000114 dme-miR-9a 41988 ss aguAUGUCG--AUCUA--UUGGUUUCu | |||: ||||| |||||||| aauUUCAGUUGUAGAUACAACCAAAGa 2 21 391 417 [dm3:3R:12200838-12200864:-] 0.5893 162 7 -19.84 -1.2011 MIMAT0000114 dme-miR-9a 41988 ss aguAUGUCG--AUCUA--UUGGUUUCu | |||: ||||| |||||||| aauUUCAGUUGUAGAUACAACCAAAGa 2 21 1084 1110 [dm3:3R:12200838-12200864:-] 0.5893 162 7 -19.84 -1.1191 MIMAT0012531 dme-miR-10-3p 41988 ss uuuggagaGAUCUUGGCU-UAAAc :||| |:||| |||| gauggcggUUAGCAUCGACAUUUa 2 16 368 391 [dm3:3R:12200864-12200887:-] 0.5893 123 0 -9.93 -1.0084 MIMAT0012531 dme-miR-10-3p 41988 ss uuuggagaGAUCUUGGCU-UAAAc :||| |:||| |||| gauggcggUUAGCAUCGACAUUUa 2 16 1061 1084 [dm3:3R:12200864-12200887:-] 0.5893 123 0 -9.93 -0.8697 MIMAT0000116 dme-miR-11 41988 ss cguucuugagucUGACACUAc |||||||| ucuauuuauuuuACUGUGAUa 2 10 181 201 [dm3:3R:12201054-12201074:-] 0.5893 145 7 -10.39 -1.2837 MIMAT0000116 dme-miR-11 41988 ss cguucuugagucUGACACUAc |||||||| ucuauuuauuuuACUGUGAUa 2 10 874 894 [dm3:3R:12201054-12201074:-] 0.5893 145 7 -10.39 -1.2339 MIMAT0000118 dme-miR-13a 41988 ss ugaGUAGUUUUACCGACACUAu :||: | | ||||||| uucUAUUUAUUUUACUGUGAUa 2 20 180 201 [dm3:3R:12201054-12201075:-] 0.5893 147 7 -12.85 -1.2846 MIMAT0000118 dme-miR-13a 41988 ss ugaGUAGUUUUACCGACACUAu :||: | | ||||||| uucUAUUUAUUUUACUGUGAUa 2 20 873 894 [dm3:3R:12201054-12201075:-] 0.5893 147 7 -12.85 -1.2353 MIMAT0000119 dme-miR-13b 41988 ss ugagcAGUUUUACCGACACUAu |: | | ||||||| uucuaUUUAUUUUACUGUGAUa 2 18 180 201 [dm3:3R:12201054-12201075:-] 0.5893 141 7 -11.95 -1.2846 MIMAT0000119 dme-miR-13b 41988 ss ugagcAGUUUUACCGACACUAu |: | | ||||||| uucuaUUUAUUUUACUGUGAUa 2 18 873 894 [dm3:3R:12201054-12201075:-] 0.5893 141 7 -11.95 -1.2353 MIMAT0000332 dme-miR-274 41988 ss uaaUGGGCAAUCACAGCCAG-UGUUUu ||: | | || | ||| ||||| gaaACUAGGU-UUGCCCGUCAACAAAa 2 24 228 253 [dm3:3R:12201002-12201027:-] 0.5893 121 0 -13.97 -0.8916 MIMAT0000332 dme-miR-274 41988 ss uaaUGGGCAAUCACAGCCAG-UGUUUu ||: | | || | ||| ||||| gaaACUAGGU-UUGCCCGUCAACAAAa 2 24 921 946 [dm3:3R:12201002-12201027:-] 0.5893 121 0 -13.97 -0.7288 MIMAT0000341 dme-miR-279 41988 ss aauuacucacACCU---AGAUCAGu |||| ||||||| aaaguuuucuUGGAAUUUCUAGUCg 2 13 731 755 [dm3:3R:12200500-12200524:-] 0.6112 143 7 -15.04 -0.7673 MIMAT0000341 dme-miR-279 41988 ss aauuacucacACCU---AGAUCAGu |||| ||||||| aaaguuuucuUGGAAUUUCUAGUCg 2 13 1424 1448 [dm3:3R:12200500-12200524:-] 0.6112 143 7 -15.04 -0.6146 MIMAT0000347 dme-miR-283 41988 ss ucuuaauggucgacUAUAAAu |||||| guauucaaaaacauAUAUUUa 2 8 939 959 [dm3:3R:12200296-12200316:-] 0.5814 120 6 -2.75 -0.2430 MIMAT0000347 dme-miR-283 41988 ss ucuuaauggucgacUAUAAAu |||||| agcuaauaaacgaaAUAUUUa 2 8 978 998 [dm3:3R:12200257-12200277:-] 0.5814 120 6 -3.44 -0.3222 MIMAT0000347 dme-miR-283 41988 ss ucuuaauggucgacUAUAAAu |||||| guauucaaaaacauAUAUUUa 2 8 1632 1652 [dm3:3R:12200296-12200316:-] 0.5814 120 6 -2.75 -0.1659 MIMAT0000347 dme-miR-283 41988 ss ucuuaauggucgacUAUAAAu |||||| agcuaauaaacgaaAUAUUUa 2 8 1671 1691 [dm3:3R:12200257-12200277:-] 0.5814 120 6 -3.44 -0.2250 MIMAT0000349 dme-miR-281-2* 41988 ss ugacaGCUGCCUAUCGAGAGAa | | | :| ||||||| ugcacCCAAGUGU-GCUCUCUc 2 18 98 118 [dm3:3R:12201830-12201850:-] 0.5824 143 7 -12.87 -0.2160 MIMAT0000359 dme-miR-286 41988 ss ucgugcUCACAAG--CC----AGAUCAGu ||| ||| || ||||||| guuuaaAGUUUUCUUGGAAUUUCUAGUCg 2 18 727 755 [dm3:3R:12200500-12200528:-] 0.6112 143 7 -14.87 -0.7636 MIMAT0000359 dme-miR-286 41988 ss ucgugcUCACAAG--CC----AGAUCAGu ||| ||| || ||||||| guuuaaAGUUUUCUUGGAAUUUCUAGUCg 2 18 1420 1448 [dm3:3R:12200500-12200528:-] 0.6112 143 7 -14.87 -0.6109 MIMAT0000362 dme-miR-263b 41988 ss cacuuAAGAGGGU-CAC-GGUUc |||||| | ||| |||| ucuccUUCUCCGAGGUGACCAAc 2 17 653 675 [dm3:3R:12201273-12201295:-] 0.6911 127 0 -16.29 -0.1789 MIMAT0000390 dme-miR-304 41988 ss gaGUGU-AAAUGUUUAACU-CUAAu :||| ||| : ||||| |||| auUACAGCUUAAGCAUUGAUGAUUg 2 22 909 933 [dm3:3R:12200322-12200346:-] 0.5814 128 0 -12.15 -1.0193 MIMAT0000390 dme-miR-304 41988 ss gaGUGUAAAUGUUUAAC-UCUAau ||:|| | :|||||| |||| aaCAUAUAUUUAAAUUGUAGAUaa 3 22 948 971 [dm3:3R:12200284-12200307:-] 0.5814 125 0 -13.51 -0.1876 MIMAT0000390 dme-miR-304 41988 ss gaGUGU-AAAUGUUUAACU-CUAAu :||| ||| : ||||| |||| auUACAGCUUAAGCAUUGAUGAUUg 2 22 1602 1626 [dm3:3R:12200322-12200346:-] 0.5814 128 0 -12.15 -0.8908 MIMAT0000390 dme-miR-304 41988 ss gaGUGUAAAUGUUUAAC-UCUAau ||:|| | :|||||| |||| aaCAUAUAUUUAAAUUGUAGAUaa 3 22 1641 1664 [dm3:3R:12200284-12200307:-] 0.5814 125 0 -13.51 -0.1261 MIMAT0000392 dme-miR-9c 41988 ss agAUGUCGAUCUUAUGGUUUCu |::|| || | ||||||| guUGUAGAUACA--ACCAAAGa 2 21 398 417 [dm3:3R:12200838-12200857:-] 0.5893 153 7 -15.19 -1.1884 MIMAT0000392 dme-miR-9c 41988 ss agAUGUCGAUCUUAUGGUUUCu |::|| || | ||||||| guUGUAGAUACA--ACCAAAGa 2 21 1091 1110 [dm3:3R:12200838-12200857:-] 0.5893 153 7 -15.19 -1.1015 MIMAT0000395 dme-miR-9b 41988 ss guAUGUCGAU-UUUA-G-UGGUUUCu | |||:|: |:|| | ||||||| auUUCAGUUGUAGAUACAACCAAAGa 2 22 392 417 [dm3:3R:12200838-12200863:-] 0.5893 158 7 -20.18 -1.2043 MIMAT0000395 dme-miR-9b 41988 ss guAUGUCGAU-UUUA-G-UGGUUUCu | |||:|: |:|| | ||||||| auUUCAGUUGUAGAUACAACCAAAGa 2 22 1085 1110 [dm3:3R:12200838-12200863:-] 0.5893 158 7 -20.18 -1.1235 MIMAT0000399 dme-miR-308 41988 ss gagugucAUAUUAGGACACUAa ||| | ||||||| uucuauuUAUUUUACUGUGAUa 2 16 180 201 [dm3:3R:12201054-12201075:-] 0.5893 151 7 -10.66 -1.2820 MIMAT0000399 dme-miR-308 41988 ss gagugucAUAUUAGGACACUAa ||| | ||||||| uucuauuUAUUUUACUGUGAUa 2 16 873 894 [dm3:3R:12201054-12201075:-] 0.5893 151 7 -10.66 -1.2313 MIMAT0000406 dme-miR-314 41988 ss ggcuugaauaaccgAGCUUAu |||||| aaucuagaaaauaaUCGAAUc 2 8 1772 1792 [dm3:3R:12200156-12200176:-] 0.5467 120 6 -7.38 -0.1902 MIMAT0000410 dme-miR-318 41988 ss acucUAUUUGUUUCGGG-UCACu ||||| :|| ||| |||| auuuAUAAAAGAAUCCCGAGUGc 2 19 1017 1039 [dm3:3R:12200216-12200238:-] 0.5814 134 0 -12.17 -0.6804 MIMAT0000410 dme-miR-318 41988 ss acucUAUUUGUUUCGGG-UCACu ||||| :|| ||| |||| auuuAUAAAAGAAUCCCGAGUGc 2 19 1710 1732 [dm3:3R:12200216-12200238:-] 0.5814 134 0 -12.17 -0.5353 MIMAT0000411 dme-miR-2c 41988 ss cgGGUAGUUUCGACCGACACUAu |:||: | :| ||||||| uuCUAUU-UAUUUUACUGUGAUa 2 22 180 201 [dm3:3R:12201054-12201075:-] 0.5893 147 7 -14.31 -1.2854 MIMAT0000411 dme-miR-2c 41988 ss cgGGUAGUUUCGACCGACACUAu |:||: | :| ||||||| uuCUAUU-UAUUUUACUGUGAUa 2 22 873 894 [dm3:3R:12201054-12201075:-] 0.5893 147 7 -14.31 -1.2366 MIMAT0005467 dme-miR-190 41988 ss guUGGUUCUUAUAG--UUUGUAUAga |:|| | || || |||||||| ugAUCAUGUAU-UCAAAAACAUAUau 3 23 932 956 [dm3:3R:12200299-12200323:-] 0.5814 143 0 -10.56 -0.1789 MIMAT0005467 dme-miR-190 41988 ss guUGGUUCUUAUAG--UUUGUAUAga |:|| | || || |||||||| ugAUCAUGUAU-UCAAAAACAUAUau 3 23 1625 1649 [dm3:3R:12200299-12200323:-] 0.5814 143 0 -10.56 -0.1200 MIMAT0005471 dme-miR-958 41988 ss uuucaucuuaucuucUUAGAGu |||||| cgaaauauuuaauaaAAUCUCa 2 8 988 1009 [dm3:3R:12200246-12200267:-] 0.5814 120 6 -7.56 -0.5437 MIMAT0005471 dme-miR-958 41988 ss uuucaucuuaucuucUUAGAGu |||||| cgaaauauuuaauaaAAUCUCa 2 8 1681 1702 [dm3:3R:12200246-12200267:-] 0.5814 120 6 -7.56 -0.4055 MIMAT0005483 dme-miR-1002 41988 ss agCGGG-AAACAUAGGU-GAUGAAUu |||| | | || :|||||| ucGCCCGCAUAAAAACAUUUACUUAu 2 23 753 778 [dm3:3R:12200477-12200502:-] 0.6112 128 6 -18.49 -0.1770 MIMAT0005483 dme-miR-1002 41988 ss agCGGG-AAACAUAGGU-GAUGAAUu |||| | | || :|||||| ucGCCCGCAUAAAAACAUUUACUUAu 2 23 1446 1471 [dm3:3R:12200477-12200502:-] 0.6112 128 6 -18.49 -0.1186 MIMAT0005504 dme-miR-987 41988 ss guaguUAGGUCUGAUAAAUGAAau || | || |||||||| cccgcAUAAAAAC-AUUUACUUau 3 20 756 778 [dm3:3R:12200477-12200499:-] 0.6112 137 0 -6.73 -0.1446 MIMAT0005506 dme-miR-989 41988 ss caAGGU-GAUG-CAGUGUAGUGu |::| | :| | ||||||| aaUUUAUCAGCAGCAACAUCACc 2 20 513 535 [dm3:3R:12201413-12201435:-] 0.6842 141 7 -10.61 -0.4960 MIMAT0005507 dme-miR-137 41988 ss gauGCACAUAAGAGUUCGUUAu ||| |: || |||||||| cccCGU-UGAUCCCAAGCAAUc 2 20 337 357 [dm3:3R:12200898-12200918:-] 0.5893 161 7 -13.62 -0.1163 MIMAT0005515 dme-miR-996 41988 ss ucugcucGUACUUU--AGAUCAGu | ||:|| ||||||| aaguuuuCUUGGAAUUUCUAGUCg 2 16 732 755 [dm3:3R:12200500-12200523:-] 0.6112 150 7 -14.22 -0.7599 MIMAT0005515 dme-miR-996 41988 ss ucugcucGUACUUU--AGAUCAGu | ||:|| ||||||| aaguuuuCUUGGAAUUUCUAGUCg 2 16 1425 1448 [dm3:3R:12200500-12200523:-] 0.6112 150 7 -14.22 -0.6072 MIMAT0005516 dme-miR-252 41988 ss gaggacgccgugaucAUGAAUc |||||| ccgcauaaaaacauuUACUUAu 2 8 757 778 [dm3:3R:12200477-12200498:-] 0.6112 120 6 -5.76 -0.1787 MIMAT0005516 dme-miR-252 41988 ss gaggacgccgugaucAUGAAUc |||||| ccgcauaaaaacauuUACUUAu 2 8 1450 1471 [dm3:3R:12200477-12200498:-] 0.6112 120 6 -5.76 -0.1198 MIMAT0005016 dme-miR-1003 41988 ss gacACUUAUACAUUUACAC-UCu |||| ||:|||||| || uacUGAACCAGUGAAUGUGCAGg 2 20 680 702 [dm3:3R:12201246-12201268:-] 0.6537 131 0 -15.92 -0.1411 MIMAT0005024 dme-miR-1011 41988 ss gacgcucgcuAAAC-UUGGUUAUu | || |||||||| cucaccuucuUCUGAAACCAAUAg 2 14 61 84 [dm3:3R:12201864-12201887:-] 0.4883 148 7 -10.74 -0.3190

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ss RAID00002827 dme-miR-137-3p miRNA MIMAT0005507 ss mRNA 41988 Prediction 0.2202 ss RAID00007664 dme-miR-9b-5p miRNA MIMAT0000395 ss mRNA 41988 Prediction 0.2202 ss RAID00070772 dme-miR-219-5p miRNA MIMAT0000335 ss mRNA 41988 Prediction 0.2202 ss RAID00079471 dme-mir-6-3 miRNA MI0000126 ss mRNA 41988 Prediction 0.1828 ss RAID00278861 dme-miR-281-2-5p miRNA MIMAT0000349 ss mRNA 41988 Prediction 0.1828 ss RAID00286618 dme-miR-1002-5p miRNA MIMAT0005483 ss mRNA 41988 Prediction 0.1828 ss RAID00311886 dme-miR-274-5p miRNA MIMAT0000332 ss mRNA 41988 Prediction 0.1828 ss RAID00318944 dme-miR-976-3p miRNA MIMAT0005492 ss mRNA 41988 Prediction 0.1828 ss RAID00405768 dme-miR-309-3p miRNA MIMAT0000401 ss mRNA 41988 Prediction 0.1828 ss RAID00425434 dme-miR-2a-3p miRNA MIMAT0000106 ss mRNA 41988 Prediction 0.2202 ss RAID00632957 dme-miR-962-5p miRNA MIMAT0005476 ss mRNA 41988 Prediction 0.1828 ss RAID00746861 dme-miR-252-5p miRNA MIMAT0005516 ss mRNA 41988 Prediction 0.1828 ss RAID00818027 dme-mir-2b-1 miRNA MI0000119 ss mRNA 41988 Prediction 0.1828 ss RAID00888458 dme-miR-1011-3p miRNA MIMAT0005024 ss mRNA 41988 Prediction 0.2202 ss RAID01100558 dme-miR-9c-5p miRNA MIMAT0000392 ss mRNA 41988 Prediction 0.2381 ss RAID01193691 dme-miR-958-3p miRNA MIMAT0005471 ss mRNA 41988 Prediction 0.2202 ss RAID01204703 dme-miR-263b-5p miRNA MIMAT0000362 ss mRNA 41988 Prediction 0.2381 ss RAID01212343 dme-miR-4-3p miRNA MIMAT0000109 ss mRNA 41988 Prediction 0.1828 ss RAID01242225 dme-mir-2b-2 miRNA MI0000120 ss mRNA 41988 Prediction 0.1828 ss RAID01310564 dme-miR-13b-3p miRNA MIMAT0000119 ss mRNA 41988 Prediction 0.2202 ss RAID01444310 dme-miR-318-3p miRNA MIMAT0000410 ss mRNA 41988 Prediction 0.2202 ss RAID01716363 dme-miR-1016-3p miRNA MIMAT0005029 ss mRNA 41988 Prediction 0.1828 ss RAID01735999 dme-mir-13b-1 miRNA MI0000134 ss mRNA 41988 Prediction 0.1828 ss RAID01775252 dme-miR-991-3p miRNA MIMAT0005509 ss mRNA 41988 Prediction 0.1828 ss RAID01922524 dme-miR-974-5p miRNA MIMAT0005490 ss mRNA 41988 Prediction 0.1828 ss RAID02128113 dme-miR-304-5p miRNA MIMAT0000390 ss mRNA 41988 Prediction 0.1828 ss RAID02138212 dme-miR-989-3p miRNA MIMAT0005506 ss mRNA 41988 Prediction 0.2202 ss RAID02198394 dme-miR-6-3p miRNA MIMAT0000111 ss mRNA 41988 Prediction 0.2381 ss RAID02361196 dme-miR-9a-5p miRNA MIMAT0000114 ss mRNA 41988 Prediction 0.2202 ss RAID02371939 dme-mir-13b-2 miRNA MI0000135 ss mRNA 41988 Prediction 0.1828 ss RAID02464906 dme-miR-1003-3p miRNA MIMAT0005016 ss mRNA 41988 Prediction 0.1828 ss RAID02475480 dme-miR-277-3p miRNA MIMAT0000338 ss mRNA 41988 Prediction 0.1828 ss RAID02563332 dme-miR-11-3p miRNA MIMAT0000116 ss mRNA 41988 Prediction 0.2381 ss RAID02689207 dme-miR-3-3p miRNA MIMAT0000108 ss mRNA 41988 Prediction 0.1828 ss RAID02771160 dme-miR-996-3p miRNA MIMAT0005515 ss mRNA 41988 Prediction 0.2455 ss RAID02775829 dme-mir-2a-1 miRNA MI0000117 ss mRNA 41988 Prediction 0.1828 ss RAID02782719 dme-miR-13a-3p miRNA MIMAT0000118 ss mRNA 41988 Prediction 0.2381 ss RAID02884792 dme-miR-2c-3p miRNA MIMAT0000411 ss mRNA 41988 Prediction 0.2381 ss RAID02890799 dme-mir-6-1 miRNA MI0000124 ss mRNA 41988 Prediction 0.1828 ss RAID03031500 dme-miR-2b-3p miRNA MIMAT0000107 ss mRNA 41988 Prediction 0.2202 ss RAID03113482 dme-miR-966-5p miRNA MIMAT0005481 ss mRNA 41988 Prediction 0.1828 ss RAID03254358 dme-miR-10-3p miRNA MIMAT0012531 ss mRNA 41988 Prediction 0.1828 ss RAID03305491 dme-miR-981-3p miRNA MIMAT0005497 ss mRNA 41988 Prediction 0.1828 ss RAID03351054 dme-miR-8-3p miRNA MIMAT0000113 ss mRNA 41988 Prediction 0.1828 ss RAID03393555 dme-miR-314-3p miRNA MIMAT0000406 ss mRNA 41988 Prediction 0.1828 ss RAID03428974 dme-mir-2a-2 miRNA MI0000118 ss mRNA 41988 Prediction 0.1828 ss RAID03463110 dme-miR-190-5p miRNA MIMAT0005467 ss mRNA 41988 Prediction 0.1828 ss RAID03464623 dme-miR-7-5p miRNA MIMAT0000112 ss mRNA 41988 Prediction 0.2381 ss RAID03475257 dme-miR-284-3p miRNA MIMAT0000348 ss mRNA 41988 Prediction 0.1828 ss RAID03513538 dme-mir-6-2 miRNA MI0000125 ss mRNA 41988 Prediction 0.1828 ss RAID03565212 dme-miR-308-3p miRNA MIMAT0000399 ss mRNA 41988 Prediction 0.2381 ss RAID03593954 dme-miR-283-5p miRNA MIMAT0000347 ss mRNA 41988 Prediction 0.1828 ss RAID03772477 dme-miR-987-5p miRNA MIMAT0005504 ss mRNA 41988 Prediction 0.1828 ss RAID03779241 dme-miR-286-3p miRNA MIMAT0000359 ss mRNA 41988 Prediction 0.2381 ss RAID03808363 dme-miR-279-3p miRNA MIMAT0000341 ss mRNA 41988 Prediction 0.2381 ss RAID03909628 dme-miR-985-3p miRNA MIMAT0005502 ss mRNA 41988 Prediction 0.1828