DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 33379 Su(dx) auaGUAAAGUAUACGUUGCAUUUAUGu ::| |:|||| || |||||:| uacUGUAUUAUAU--AAAAUAAAUGCa 2 25 1150 1174 [dm3:2L:2044333-2044357:+] 0.7753 145 0 -8.69 -0.4464 MIMAT0000343 dme-miR-280 33379 Su(dx) auagUA-AAGUAUACGUUGCAUUUAUgu || | :|||| :| |||||| uuaaAUAUAUAUAUAUAUAUUAAAUAga 3 24 1098 1125 [dm3:2L:2044281-2044308:+] 0.7753 138 0 -7.23 -0.8732 MIMAT0000343 dme-miR-280 33379 Su(dx) auAGUA-AAGUAUACGUUGCAUUUAUGu |::| | |: :| || ||||||: gaUUGUGUACGAGUACAUAUUAAAUAUa 2 26 1079 1106 [dm3:2L:2044262-2044289:+] 0.6410 136 0 -9.37 -0.4552 MIMAT0000343 dme-miR-280 33379 Su(dx) auaguaaaGUAUACG--UUG-CAUUUAUgu |||| | ||| |||||| uuaucgagCAUACACAGAACUUUAAAUAga 3 20 793 822 [dm3:2L:2043976-2044005:+] 0.5068 129 0 -10.84 -0.1255 MIMAT0000364 dme-miR-289 33379 Su(dx) ucAGCGUCCGAGGUGAA---UUUAUAAAu |:| : || |:|:|| |:|||||| uaUUGAGAGC-CUAUUUUAGAGAUAUUUa 2 25 268 295 [dm3:2L:2043451-2043478:+] 0.4986 141 6 -14.93 -0.1028 MIMAT0000364 dme-miR-289 33379 Su(dx) ucaGCGU-CCGAGGUG-AAUUUAUAAAu :|:| | | ||: |||||||| | uugUGUACGAGUACAUAUUAAAUAUAUa 2 24 1081 1108 [dm3:2L:2044264-2044291:+] 0.6410 129 0 -10.11 -0.1668 MIMAT0005488 dme-miR-972 33379 Su(dx) cggauuuAUAAGCAUAACAUGu || |: ||||||| uugcuucUAGUUCAAUUGUACa 2 16 628 649 [dm3:2L:2043811-2043832:+] 0.6295 147 7 -13.17 -0.9265 MIMAT0005488 dme-miR-972 33379 Su(dx) cggauuuaUAAGCAUAAC-AUGu |||: ||||| ||| auuggugaAUUUAUAUUGAUACg 2 15 681 703 [dm3:2L:2043864-2043886:+] 0.5385 122 0 -9.13 -0.7573 MIMAT0005499 dme-miR-983 33379 Su(dx) aguaaUCAAGCUUUGCAUAAUa | | :| | :|||||| aaugcAAUGUGUACUGUAUUAu 2 18 1139 1160 [dm3:2L:2044322-2044343:+] 0.7753 133 6 -7.77 -0.2484 MIMAT0005509 dme-miR-991 33379 Su(dx) ugAAAGGUUUG-AUG----UUGAAAUu || :|:|:| ||| ||||||| guUUAUCGAGCAUACACAGAACUUUAa 2 21 791 817 [dm3:2L:2043974-2044000:+] 0.5068 150 7 -14.86 -0.8525 MIMAT0005510 dme-miR-992 33379 Su(dx) gaAUCAUGGU-CUUUGCACAUGa |||| : | | ||:|||||| uuUAGUUUAAUGCAAUGUGUACu 2 21 1131 1153 [dm3:2L:2044314-2044336:+] 0.7753 147 6 -17.86 -0.3265 MIMAT0005517 dme-miR-997 33379 Su(dx) acuuugaggaaGCUCAAACCc :|||||||| uguugacgagcUGAGUUUGGu 2 11 740 760 [dm3:2L:2043923-2043943:+] 0.5235 146 7 -13.60 -0.2063 MIMAT0005018 dme-miR-1005 33379 Su(dx) gaCGCUUAAUUUC----UAAGGUCu |: :||||| | ||||||| uuGUUGAUUAAUGUUUAAUUCCAGu 2 20 24 48 [dm3:2L:2043207-2043231:+] 0.6183 150 7 -13.22 -0.8511 MIMAT0005028 dme-miR-1015 33379 Su(dx) gacguucucucUACAGGGUCcu || |||||| uaagcaccgccAU-UCCCAGaa 3 12 494 514 [dm3:2L:2043677-2043697:+] 0.5337 121 0 -10.54 -0.1021 MIMAT0011784 dme-miR-2279* 33379 Su(dx) uuaaaguguGUGUCUAUAAAUu :| ||||||||| agccuauuuUAGAGAUAUUUAu 2 14 275 296 [dm3:2L:2043458-2043479:+] 0.4986 153 7 -9.02 -0.6315 MIMAT0011784 dme-miR-2279* 33379 Su(dx) uuAAAGUGUGUGUCUAUAAAUu | |:| |:|:| |||| || caUAUUAAAUAUAUAUAUAUAu 2 21 1094 1115 [dm3:2L:2044277-2044298:+] 0.7753 132 0 -6.70 -0.1231 MIMAT0011784 dme-miR-2279* 33379 Su(dx) uuAAAGUGUGUGU-CUAUAAAuu || |:| | | |||||| cuUUAAAUAGAAACUAUAUUUua 3 21 812 834 [dm3:2L:2043995-2044017:+] 0.5068 127 0 -3.63 -0.1149 MIMAT0011784 dme-miR-2279* 33379 Su(dx) uuaaagUGUGUGUCUAUAAAUu |::|| | |||||| aaauaaAUGCAAAAUUAUUUAg 2 17 1164 1185 [dm3:2L:2044347-2044368:+] 0.7753 124 6 -5.28 -0.3430 MIMAT0011784 dme-miR-2279* 33379 Su(dx) uuaaagugugugucuAUAAAUu |||||| auauuaaauagauuuUAUUUAg 2 8 1114 1135 [dm3:2L:2044297-2044318:+] 0.7753 120 6 -7.63 -0.6231 MIMAT0011786 dme-miR-2280 33379 Su(dx) uauaAAAUAACGGUUCGAUUCu |||| :| ||||||| accgUUUAGCUUC-AGCUAAGc 2 19 462 482 [dm3:2L:2043645-2043665:+] 0.5337 148 7 -11.44 -0.1101 MIMAT0011790 dme-miR-2282 33379 Su(dx) uaagauaaAAAUCGAG-UGGCUa |||| ||| ||||| guaaauagUUUA-CUCGACCGAa 2 15 711 732 [dm3:2L:2043894-2043915:+] 0.5235 120 0 -12.11 -0.9138 MIMAT0011791 dme-miR-2283 33379 Su(dx) uaacagcauaaguacUAUAAAAg ||||||| cuuuaaauagaaacuAUAUUUUa 2 9 812 834 [dm3:2L:2043995-2044017:+] 0.5068 140 7 -2.28 -1.1477 MIMAT0011791 dme-miR-2283 33379 Su(dx) uaacagcAUAAGUACUAUAAAAg |||| | | ||||| auauauaUAUUAAAUAGAUUUUa 2 17 1108 1130 [dm3:2L:2044291-2044313:+] 0.7753 124 0 -2.02 -0.2999 MIMAT0011791 dme-miR-2283 33379 Su(dx) uaacagcAUAAGUACUAUAAAAg ||| :|| |||| || uuaaauaUAUAUAU-AUAUAUUa 2 17 1098 1119 [dm3:2L:2044281-2044302:+] 0.7753 122 0 -3.49 -0.1842 MIMAT0012194 dme-miR-307-as* 33379 Su(dx) ggUAGUGUUGGAGGAACUCACu | ::||| |: || |||| uaAAUGCAAAAUUAUUUAGUGa 2 21 1167 1188 [dm3:2L:2044350-2044371:+] 0.7753 124 0 -8.38 -0.2565 MIMAT0012196 dme-miR-2489 33379 Su(dx) ugACGU-UUAUGUUGUAUGUUAu ||:| :||: |:||| ||| ugUGUACUGUAUUAUAUAAAAUa 2 21 1146 1168 [dm3:2L:2044329-2044351:+] 0.7753 127 0 -9.79 -0.1588 MIMAT0012196 dme-miR-2489 33379 Su(dx) ugacGUUUAUGUUGUAU-GUUAu ::||| ||| ||| |||| auaaUGAAUUCAA-AUAGCAAUa 2 19 956 977 [dm3:2L:2044139-2044160:+] 0.5068 124 0 -7.59 -1.1742 MIMAT0012197 dme-miR-2490 33379 Su(dx) aacgUUGGACGAAAU-AGCGAAGu |:::|| || | ||||||| acaaAGUUUGAUUGAUUCGCUUCu 2 20 349 372 [dm3:2L:2043532-2043555:+] 0.4986 158 7 -15.63 -0.8492 MIMAT0012201 dme-miR-2493 33379 Su(dx) ugcgGAGCG-UGUUUAU-GUGUGCc :|||| || :||| |||||| uaugUUCGCAACCGAUAUCACACGa 2 20 194 218 [dm3:2L:2043377-2043401:+] 0.4800 134 6 -21.71 -0.8571 MIMAT0012202 dme-miR-2494* 33379 Su(dx) aaggguuagaccacGUGAAUg |||||| caaacacgagaauaCACUUAa 2 8 931 951 [dm3:2L:2044114-2044134:+] 0.5068 120 6 -9.78 -0.1122 MIMAT0012210 dme-miR-2498* 33379 Su(dx) guuuuuAUUCGUA-UUG--UCGGAAAu | ||| | |:| ||||||| uaccguUUAGCUUCAGCUAAGCCUUUa 2 19 461 487 [dm3:2L:2043644-2043670:+] 0.5337 148 7 -13.33 -0.8531 MIMAT0012215 dme-miR-2500 33379 Su(dx) gacuccagGUGUGUGUUUUAGg :| |::||||||: auauaaaaUAAAUGCAAAAUUa 2 15 1159 1180 [dm3:2L:2044342-2044363:+] 0.7753 134 0 -4.58 -0.7518 MIMAT0000334 dme-miR-92a 33379 Su(dx) uauccggcccuguucACGUUAc |||||| uuuuauuuaguuuaaUGCAAUg 2 8 1126 1147 [dm3:2L:2044309-2044330:+] 0.7753 120 6 -9.09 -0.3006 MIMAT0000347 dme-miR-283 33379 Su(dx) ucuuaauGGUCGACUAUAAAu :| |:|||||||| auucgcuUCUGUUGAUAUUUc 2 15 363 383 [dm3:2L:2043546-2043566:+] 0.4986 154 7 -10.87 -0.5982 MIMAT0000347 dme-miR-283 33379 Su(dx) ucuUAAUGGUCGACUAUAAAu ||| ::|| ||||||| ccuAUU-UUAG-AGAUAUUUa 2 19 277 295 [dm3:2L:2043460-2043478:+] 0.4986 146 7 -8.85 -1.0756 MIMAT0000347 dme-miR-283 33379 Su(dx) ucuUAAUGGUCGACUAUAAAu || | || ||||||| gauAUCA-CACGAGAUAUUUg 2 19 207 226 [dm3:2L:2043390-2043409:+] 0.4986 144 7 -8.84 -0.3428 MIMAT0000358 dme-miR-92b 33379 Su(dx) cguccggccCUGAUCACGUUAa | :|| |||||| uuuuauuuaGUUUAAUGCAAUg 2 14 1126 1147 [dm3:2L:2044309-2044330:+] 0.7753 121 6 -5.57 -0.3006 MIMAT0000402 dme-miR-310 33379 Su(dx) uuuccggcccuucacACGUUAu |||||| uuuuauuuaguuuaaUGCAAUg 2 8 1126 1147 [dm3:2L:2044309-2044330:+] 0.7753 120 6 -7.02 -0.3006 MIMAT0000403 dme-miR-311 33379 Su(dx) aguccggccacuuacACGUUAu |||||| uuuuauuuaguuuaaUGCAAUg 2 8 1126 1147 [dm3:2L:2044309-2044330:+] 0.7753 120 6 -6.70 -0.2955 MIMAT0000404 dme-miR-312 33379 Su(dx) aguccggcagaguucACGUUAu |||||| uuuuauuuaguuuaaUGCAAUg 2 8 1126 1147 [dm3:2L:2044309-2044330:+] 0.7753 120 6 -9.26 -0.2930 MIMAT0000405 dme-miR-313 33379 Su(dx) agcccgacacuuuucACGUUAu |||||| uuuuauuuaguuuaaUGCAAUg 2 8 1126 1147 [dm3:2L:2044309-2044330:+] 0.7753 120 6 -6.70 -0.2955 MIMAT0005463 dme-miR-iab-4as-5p 33379 Su(dx) gccAU-AUGGAAGUCA--UAUGCAUu || ||:: |:| | ||||||| uguUAUUAUUAUUAUUACAUACGUAu 2 21 114 139 [dm3:2L:2043297-2043322:+] 0.6183 150 7 -8.52 -1.0312 MIMAT0005463 dme-miR-iab-4as-5p 33379 Su(dx) gcCAUAUGGAAGUCAUAUG-CAUu |||| || | |||||| ||| auGUAUUACUACUGUAUACUGUAa 2 22 138 161 [dm3:2L:2043321-2043344:+] 0.5398 137 0 -14.86 -0.8722 MIMAT0005483 dme-miR-1002 33379 Su(dx) agcgGGAAACAUAGGUGAUGA-AUu | | ||||| :|||||| || cauaCGUAUGUAU-UACUACUGUAu 2 21 131 154 [dm3:2L:2043314-2043337:+] 0.6183 130 0 -14.61 -0.8367 MIMAT0005484 dme-miR-968 33379 Su(dx) guugggaaauUACCU-AUGAUGAau ||| | ||||||| uuacauacguAUGUAUUACUACUgu 3 15 128 152 [dm3:2L:2043311-2043335:+] 0.6183 133 0 -9.90 -0.1005 MIMAT0005487 dme-miR-971 33379 Su(dx) agUGACA-UUCUUCAUUGUG-GUu ||||| || | | ||||| || auACUGUAAACACGAAACACACAc 2 21 153 176 [dm3:2L:2043336-2043359:+] 0.5398 131 0 -14.16 -0.7309 MIMAT0005497 dme-miR-981 33379 Su(dx) acgucCAAAGCAGC-UGUUGCUu ||| |:| ||||||| uucuaGUUCAAUUGUACAACGAg 2 18 632 654 [dm3:2L:2043815-2043837:+] 0.6295 148 7 -14.17 -0.2499 MIMAT0005504 dme-miR-987 33379 Su(dx) guAGUUAGGUCUGAUAAAUGAAAu | ||| | :|||||| ||| auUAAAUAGAUUUUAUUUAGUUUa 2 23 1116 1139 [dm3:2L:2044299-2044322:+] 0.7753 134 0 -10.85 -0.2335 MIMAT0005507 dme-miR-137 33379 Su(dx) gaugcACAUAAGAGU-UCGUUAu || |||| | |||||| aauaaUGAAUUCAAAUAGCAAUa 2 18 955 977 [dm3:2L:2044138-2044160:+] 0.5068 125 6 -10.65 -1.1861 MIMAT0005519 dme-miR-999 33379 Su(dx) ucugugucagaauguCAAUUGu |||||| caaauagcaauaauuGUUAACa 2 8 966 987 [dm3:2L:2044149-2044170:+] 0.5068 120 6 -9.32 -0.1558 MIMAT0005024 dme-miR-1011 33379 Su(dx) gacgcucgcUAAACUUGGUUAUu | || |||||||| cgagaauacACUUAAACCAAUAa 2 15 937 959 [dm3:2L:2044120-2044142:+] 0.5068 154 7 -14.25 -1.2280 MIMAT0005027 dme-miR-1014 33379 Su(dx) gacGUUUACUUUUACUUAAAa ||| || :||||||| ccaCAAUUG---GUGAAUUUa 2 19 676 693 [dm3:2L:2043859-2043876:+] 0.5385 146 7 -7.76 -0.6735 MIMAT0005027 dme-miR-1014 33379 Su(dx) gacGUUUACUU-UUACUUAAaa :||| || |||||||| acuUAAACCAAUAAUGAAUUca 3 19 946 967 [dm3:2L:2044129-2044150:+] 0.5068 141 0 -6.57 -0.1563

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Su(dx) RAID00023405 dme-miR-iab-8-5p miRNA MIMAT0005463 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID00186962 dme-miR-999-3p miRNA MIMAT0005519 Su(dx) mRNA 33379 Prediction 0.2202 Su(dx) RAID00412608 dme-miR-1002-5p miRNA MIMAT0005483 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID00468006 dme-miR-283-5p miRNA MIMAT0000347 Su(dx) mRNA 33379 Prediction 0.2202 Su(dx) RAID00653659 dme-miR-1011-3p miRNA MIMAT0005024 Su(dx) mRNA 33379 Prediction 0.2202 Su(dx) RAID01094775 dme-miR-92b-3p miRNA MIMAT0000358 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID01291811 dme-miR-1005-3p miRNA MIMAT0005018 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID01342124 dme-miR-33-5p miRNA MIMAT0000342 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID01404620 dme-miR-92a-3p miRNA MIMAT0000334 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID01484109 dme-miR-1014-3p miRNA MIMAT0005027 Su(dx) mRNA 33379 Prediction 0.2202 Su(dx) RAID01588668 dme-miR-1006-3p miRNA MIMAT0005019 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID01608837 dme-miR-991-3p miRNA MIMAT0005509 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID01999600 dme-miR-310-3p miRNA MIMAT0000402 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID02280848 dme-miR-311-3p miRNA MIMAT0000403 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID02400340 dme-miR-137-3p miRNA MIMAT0005507 Su(dx) mRNA 33379 Prediction 0.2202 Su(dx) RAID02549735 dme-miR-312-3p miRNA MIMAT0000404 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID02809106 dme-miR-313-3p miRNA MIMAT0000405 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID02977903 dme-miR-971-3p miRNA MIMAT0005487 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID03143702 dme-miR-997-5p miRNA MIMAT0005517 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID03242925 dme-miR-972-3p miRNA MIMAT0005488 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID03312214 dme-miR-987-5p miRNA MIMAT0005504 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID03408360 dme-miR-968-5p miRNA MIMAT0005484 Su(dx) mRNA 33379 Prediction 0.1828 Su(dx) RAID03426134 dme-miR-981-3p miRNA MIMAT0005497 Su(dx) mRNA 33379 Prediction 0.2202