DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 44160 sw auaguaaagUAUACGU-UGCAUUUAUGu ||| || | |:||||| agaauagagAUAAACAUAAAUGAAUACa 2 19 255 282 [dm3:X:20099511-20099538:-] 0.5300 133 0 -8.29 -0.1268 MIMAT0000343 dme-miR-280 44160 sw auaguaaaGUAUACGUUGC----AUUUAUgu | ||| :|||| |||||| uagcgaagCCUAUUUAACGAGAUUAAAUAaa 3 20 706 736 [dm3:X:20099057-20099087:-] 0.6488 134 0 -9.17 -0.2561 MIMAT0000343 dme-miR-280 44160 sw auaguaaagUAUACGU-UGCAUUUAUGu ||| || | |:||||| agaauagagAUAAACAUAAAUGAAUACa 2 19 255 282 [dm3:X:20099511-20099538:-] 0.5300 133 0 -8.29 -0.1157 MIMAT0000360 dme-miR-287 44160 sw cacguuugcuaaaaGUUGUGu |||||| gggcaggcugaaagCAACACa 2 8 551 571 [dm3:X:20099222-20099242:-] 0.5370 120 6 -18.95 -0.1913 MIMAT0000360 dme-miR-287 44160 sw cacguuugcuaaaaGUUGUGu |||||| gggcaggcugaaagCAACACa 2 8 551 571 [dm3:X:20099222-20099242:-] 0.5370 120 6 -18.95 -0.1797 MIMAT0005464 dme-miR-iab-4as-3p 44160 sw auUUGCAUAUGACUUACAUAGg ||: |:||:| |||||| uuAAUUUGUAUU-UUUGUAUCu 2 21 75 95 [dm3:X:20099698-20099718:-] 0.5355 126 6 -10.66 -0.1117 MIMAT0005464 dme-miR-iab-4as-3p 44160 sw auUUGCAUAUG-ACUUACAUAGg |:| | |: | |||||||: agAGCCCAAAUGUAAAUGUAUUa 2 21 683 705 [dm3:X:20099088-20099110:-] 0.6896 135 0 -10.09 -0.1980 MIMAT0005464 dme-miR-iab-4as-3p 44160 sw auUUGCAUAUGACUUACAUAGg ||: |:||:| |||||| uuAAUUUGUAUU-UUUGUAUCu 2 21 75 95 [dm3:X:20099698-20099718:-] 0.5355 126 6 -10.66 -0.1018 MIMAT0005495 dme-miR-979 44160 sw aaUCGGACUCAAGCCCUU-CUu ||: |:| |:||||| || gaAGUGGGGGCUUGGGAAUGAa 2 20 620 641 [dm3:X:20099152-20099173:-] 0.5500 123 0 -19.66 -0.2981 MIMAT0005499 dme-miR-983 44160 sw agUAAU-CAAGCU-UUGCAUAAUa |||| | | | ||||||||| auAUUAUAUACAACAACGUAUUAa 2 21 591 614 [dm3:X:20099179-20099202:-] 0.5435 158 7 -9.48 -0.9164 MIMAT0005499 dme-miR-983 44160 sw aguaaucaagcUUUGCAUAAUa |||:|||||| agcccaaauguAAAUGUAUUAu 2 12 685 706 [dm3:X:20099087-20099108:-] 0.6896 139 6 -11.14 -0.1065 MIMAT0011784 dme-miR-2279* 44160 sw uuAAAGUGU-GUGUC-UAUAAAUu | |:|:| |: || |||||| ugUAUUAUAGCGAAGCCUAUUUAa 2 21 699 722 [dm3:X:20099071-20099094:-] 0.6896 122 6 -7.20 -0.1000 MIMAT0011788 dme-miR-2281* 44160 sw aacguagacgucgacgUCUAUUa |||||| aaacucgauagaauagAGAUAAa 2 8 246 268 [dm3:X:20099525-20099547:-] 0.5300 120 6 -11.44 -0.2901 MIMAT0011788 dme-miR-2281* 44160 sw aacguagacgucgacgUCUAUUa |||||| aaacucgauagaauagAGAUAAa 2 8 246 268 [dm3:X:20099525-20099547:-] 0.5300 120 6 -11.44 -0.2678 MIMAT0012196 dme-miR-2489 44160 sw ugACG-UUUAUGUUGUAUGUUau ||| | |||: |:|||||| aaUGCUACAUAUUAUAUACAAca 3 21 583 605 [dm3:X:20099188-20099210:-] 0.5370 147 0 -10.90 -0.7706 MIMAT0012196 dme-miR-2489 44160 sw ugACG-UUUAUGUUGUAUGUUau ||| | |||: |:|||||| aaUGCUACAUAUUAUAUACAAca 3 21 583 605 [dm3:X:20099188-20099210:-] 0.5370 147 0 -10.90 -0.1017 MIMAT0012216 dme-miR-2501 44160 sw aaUCGGGUCCGUGAGGUUUGAAUg |||||| | |||| ||||||| auAGCCCA-GAACUCAAAACUUAa 2 23 117 139 [dm3:X:20099654-20099676:-] 0.5355 180 7 -27.59 -0.6663 MIMAT0012216 dme-miR-2501 44160 sw aaUCGGGUCCGUGAGGUUUGAAUg |||||| | |||| ||||||| auAGCCCA-GAACUCAAAACUUAa 2 23 117 139 [dm3:X:20099654-20099676:-] 0.5355 180 7 -27.59 -0.6321 MIMAT0000105 dme-miR-1 44160 sw gaGGUAUGAAGAAAUGUAAGGu | ||| || || |||||| cuCAAUA-UUGGUUUCAUUCCa 2 21 356 376 [dm3:X:20099417-20099437:-] 0.5246 130 6 -17.51 -0.1477 MIMAT0000105 dme-miR-1 44160 sw gaGGUAUGAAGAAAUGUAAGGu | ||| || || |||||| cuCAAUA-UUGGUUUCAUUCCa 2 21 356 376 [dm3:X:20099417-20099437:-] 0.5246 130 6 -17.51 -0.1337 MIMAT0000111 dme-miR-6 44160 sw uuuuucuuGUCGGUGACAC-UAu | ||:|||||| || uugugaucCCGCUACUGUGUAUa 2 15 97 119 [dm3:X:20099674-20099696:-] 0.5355 122 0 -14.99 -0.3565 MIMAT0000111 dme-miR-6 44160 sw uuuuucuuGUCGGUGACAC-UAu | ||:|||||| || uugugaucCCGCUACUGUGUAUa 2 15 97 119 [dm3:X:20099674-20099696:-] 0.5355 122 0 -14.99 -0.3307 MIMAT0000334 dme-miR-92a 44160 sw uauccggcccUGUUCACGUUac |: ||||||| uugauuuuaaAUUAGUGCAAcu 3 13 487 508 [dm3:X:20099285-20099306:-] 0.5370 128 0 -7.62 -0.1142 MIMAT0000334 dme-miR-92a 44160 sw uauccggcccUGUUCACGUUac |: ||||||| uugauuuuaaAUUAGUGCAAcu 3 13 487 508 [dm3:X:20099285-20099306:-] 0.5370 128 0 -7.62 -0.1030 MIMAT0000342 dme-miR-33 44160 sw guuacgcuGAUGU-UACGUGGa |||:| || |||| cauaauauCUAUAUAUACACCu 2 14 737 758 [dm3:X:20099035-20099056:-] 0.5325 120 0 -11.41 -0.1792 MIMAT0000358 dme-miR-92b 44160 sw cguccggcccUGAUCACGUUaa |:|||||||| uugauuuuaaAUUAGUGCAAcu 3 13 487 508 [dm3:X:20099285-20099306:-] 0.5370 136 0 -11.64 -0.1142 MIMAT0000358 dme-miR-92b 44160 sw cguccggcccUGAUCACGUUaa |:|||||||| uugauuuuaaAUUAGUGCAAcu 3 13 487 508 [dm3:X:20099285-20099306:-] 0.5370 136 0 -11.64 -0.1030 MIMAT0000390 dme-miR-304 44160 sw gaguguaaauguuuaaCUCUAAu |||||| gcgaagccuauuuaacGAGAUUa 2 8 708 730 [dm3:X:20099063-20099085:-] 0.6488 120 6 -10.05 -0.6056 MIMAT0000402 dme-miR-310 44160 sw uuuccggcccUUCA-CACGUUau || | |||||| cuugauuuuaAAUUAGUGCAAcu 3 13 486 508 [dm3:X:20099285-20099307:-] 0.5370 123 0 -6.45 -0.1142 MIMAT0000402 dme-miR-310 44160 sw uuuccggcccUUCA-CACGUUau || | |||||| cuugauuuuaAAUUAGUGCAAcu 3 13 486 508 [dm3:X:20099285-20099307:-] 0.5370 123 0 -6.45 -0.1030 MIMAT0000403 dme-miR-311 44160 sw aguccggccACUUA--CACGUUau | ||| |||||| acuugauuuUAAAUUAGUGCAAcu 3 14 485 508 [dm3:X:20099285-20099308:-] 0.5370 124 0 -6.45 -0.1131 MIMAT0000403 dme-miR-311 44160 sw aguccggccACUUA--CACGUUau | ||| |||||| acuugauuuUAAAUUAGUGCAAcu 3 14 485 508 [dm3:X:20099285-20099308:-] 0.5370 124 0 -6.45 -0.1020 MIMAT0000404 dme-miR-312 44160 sw aguccggcagaguUCACGUUau ||||||| uugauuuuaaauuAGUGCAAcu 3 10 487 508 [dm3:X:20099285-20099306:-] 0.5370 125 0 -9.01 -0.1131 MIMAT0000404 dme-miR-312 44160 sw aguccggcagaguUCACGUUau ||||||| uugauuuuaaauuAGUGCAAcu 3 10 487 508 [dm3:X:20099285-20099306:-] 0.5370 125 0 -9.01 -0.1020 MIMAT0000405 dme-miR-313 44160 sw agccCGACACUUU--UCACGUUau | | | ||| ||||||| acuuGAUUUUAAAUUAGUGCAAcu 3 19 485 508 [dm3:X:20099285-20099308:-] 0.5370 133 0 -8.60 -0.1098 MIMAT0000412 dme-miR-iab-4-5p 44160 sw aguCCUAUGUAAGU-CAUAUGCa | |||||| :| |||||| aauGAAUACAUAUAUAUAUACGa 2 20 273 295 [dm3:X:20099498-20099520:-] 0.5246 134 6 -11.07 -0.3067 MIMAT0000412 dme-miR-iab-4-5p 44160 sw aguCCUAUGUAAGU-CAUAUGCa | |||||| :| |||||| aauGAAUACAUAUAUAUAUACGa 2 20 273 295 [dm3:X:20099498-20099520:-] 0.5246 134 6 -11.07 -0.2835 MIMAT0005467 dme-miR-190 44160 sw guUGGUUCU-UAUAGUU-UGUAUAga |: || | | || || |||||| agAUAAACAUAAAUGAAUACAUAUau 3 23 262 287 [dm3:X:20099506-20099531:-] 0.5300 136 0 -7.26 -0.1686 MIMAT0005467 dme-miR-190 44160 sw guUGGUUCUUAUAGUUUGUAUAGa |: || | || ||||||: aaAUAAAUUAAAUGCUACAUAUUa 2 23 573 596 [dm3:X:20099197-20099220:-] 0.5370 134 0 -5.21 -0.5012 MIMAT0005467 dme-miR-190 44160 sw guUGGUUCU-UAUAGUU-UGUAUAga |: || | | || || |||||| agAUAAACAUAAAUGAAUACAUAUau 3 23 262 287 [dm3:X:20099506-20099531:-] 0.5300 136 0 -7.26 -0.1544 MIMAT0005467 dme-miR-190 44160 sw guUGGUUCUUAUAGUUUGUAUAGa |: || | || ||||||: aaAUAAAUUAAAUGCUACAUAUUa 2 23 573 596 [dm3:X:20099197-20099220:-] 0.5370 134 0 -5.21 -0.2123 MIMAT0005470 dme-miR-957 44160 sw cgGAGUCAAAACCUGCCAAAGu |||| | | :|||||| uaCUCAAUAU----UGGUUUCa 2 21 354 371 [dm3:X:20099422-20099439:-] 0.5246 127 6 -14.59 -0.1553 MIMAT0005470 dme-miR-957 44160 sw cgGAGUCAAAACCUGCCAAAGu |||| | | :|||||| uaCUCAAUAU----UGGUUUCa 2 21 354 371 [dm3:X:20099422-20099439:-] 0.5246 127 6 -14.59 -0.1407 MIMAT0005485 dme-miR-969 44160 sw uuUUGAACGA---AUCACC-UUGAg ||:||| | |:|||| |||| gaAAUUUGAUUGGUGGUGGUAACUg 2 20 441 465 [dm3:X:20099328-20099352:-] 0.4979 126 0 -16.94 -0.5752 MIMAT0005485 dme-miR-969 44160 sw uuUUGAACGA---AUCACC-UUGAg ||:||| | |:|||| |||| gaAAUUUGAUUGGUGGUGGUAACUg 2 20 441 465 [dm3:X:20099328-20099352:-] 0.4979 126 0 -16.94 -0.5382 MIMAT0005492 dme-miR-976 44160 sw cgUAACUACUAUUGAU-UAGGUu ||| |||| : || ||||| auAUU--UGAUUGGUAUAUCCAu 2 21 325 345 [dm3:X:20099448-20099468:-] 0.5246 121 0 -11.56 -1.0329 MIMAT0005492 dme-miR-976 44160 sw cgUAACUACUAUUGAU-UAGGUu ||| |||| : || ||||| auAUU--UGAUUGGUAUAUCCAu 2 21 325 345 [dm3:X:20099448-20099468:-] 0.5246 121 0 -11.56 -1.0053 MIMAT0005493 dme-miR-977 44160 sw aaucugUUGCACUUAUAGAgu ||| | ||||||| uaaauaAACAU-AAUAUCUau 3 16 729 748 [dm3:X:20099045-20099064:-] 0.6080 133 0 -6.53 -0.3913 MIMAT0005497 dme-miR-981 44160 sw acGUCCAAAGCA-GCUGUUGCuu || || : | | |||||| uaCAUAUUAUAUACAACAACGua 3 21 588 610 [dm3:X:20099183-20099205:-] 0.5435 127 0 -8.35 -0.1170 MIMAT0005512 dme-miR-993 44160 sw ucUAUGGACAUCUCUGCUCGAAg | :||| | | ||||| || cgAAGCCUAUUUA-ACGAGAUUa 2 22 709 730 [dm3:X:20099063-20099084:-] 0.6488 123 0 -11.05 -0.1233 MIMAT0005519 dme-miR-999 44160 sw ucugugucagaAUGUCAAUUGu ||:||||||| ------gacgaUAUAGUUAACu 2 12 1 16 [dm3:X:20099777-20099792:-] 0.6803 151 7 -12.62 -1.2136 MIMAT0005519 dme-miR-999 44160 sw ucugugucagaAUGUCAAUUGu ||:||||||| ------gacgaUAUAGUUAACu 2 12 1 16 [dm3:X:20099777-20099792:-] 0.6803 151 7 -12.62 -1.1694

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sw RAID00193756 dme-miR-33-5p miRNA MIMAT0000342 sw mRNA 44160 Prediction 0.1828 sw RAID00544845 dme-miR-iab-4-5p miRNA MIMAT0000412 sw mRNA 44160 Prediction 0.1828 sw RAID00546583 dme-miR-304-5p miRNA MIMAT0000390 sw mRNA 44160 Prediction 0.2381 sw RAID00651985 dme-miR-6-3p miRNA MIMAT0000111 sw mRNA 44160 Prediction 0.1828 sw RAID00696531 dme-miR-312-3p miRNA MIMAT0000404 sw mRNA 44160 Prediction 0.1828 sw RAID00918660 dme-miR-277-3p miRNA MIMAT0000338 sw mRNA 44160 Prediction 0.1828 sw RAID01050782 dme-miR-957-3p miRNA MIMAT0005470 sw mRNA 44160 Prediction 0.2202 sw RAID01314136 dme-miR-999-3p miRNA MIMAT0005519 sw mRNA 44160 Prediction 0.2202 sw RAID01379658 dme-miR-977-3p miRNA MIMAT0005493 sw mRNA 44160 Prediction 0.1828 sw RAID01550212 dme-miR-993-3p miRNA MIMAT0005512 sw mRNA 44160 Prediction 0.1828 sw RAID01636890 dme-miR-969-5p miRNA MIMAT0005485 sw mRNA 44160 Prediction 0.1828 sw RAID01674334 dme-miR-963-5p miRNA MIMAT0005477 sw mRNA 44160 Prediction 0.1828 sw RAID01756010 dme-miR-981-3p miRNA MIMAT0005497 sw mRNA 44160 Prediction 0.1828 sw RAID01931452 dme-miR-190-5p miRNA MIMAT0005467 sw mRNA 44160 Prediction 0.1828 sw RAID02149626 dme-miR-311-3p miRNA MIMAT0000403 sw mRNA 44160 Prediction 0.1828 sw RAID02168941 dme-miR-92b-3p miRNA MIMAT0000358 sw mRNA 44160 Prediction 0.1828 sw RAID02838954 dme-miR-976-3p miRNA MIMAT0005492 sw mRNA 44160 Prediction 0.1828 sw RAID03303801 dme-miR-313-3p miRNA MIMAT0000405 sw mRNA 44160 Prediction 0.1828 sw RAID03460977 dme-miR-92a-3p miRNA MIMAT0000334 sw mRNA 44160 Prediction 0.1828 sw RAID03565072 dme-miR-310-3p miRNA MIMAT0000402 sw mRNA 44160 Prediction 0.1828 sw RAID03679117 dme-miR-1-3p miRNA MIMAT0000105 sw mRNA 44160 Prediction 0.2202 sw RAID03854173 dme-mir-iab-4 miRNA MI0000432 sw mRNA 44160 Prediction 0.1828