DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 42226 fru ucagcguccgaggugaauuUAUAAAu |||||| aauguccgaaaaguaaaauAUAUUUa 2 8 81 106 [dm3:3R:14257063-14257088:-] 0.5243 120 6 -7.42 -0.1352 MIMAT0000388 dme-miR-303 42226 fru uggUCAAAGGACACUUUGGAUUu | | | :| | ||||||| uaaAAUAUAUUUAGUAACCUAAg 2 21 94 116 [dm3:3R:14257053-14257075:-] 0.5243 148 7 -11.49 -1.0086 MIMAT0005502 dme-miR-985 42226 fru acgggcugguaaccuUGUAAAc |||||| uauaucuauaucuauACAUUUa 2 8 147 168 [dm3:3R:14251699-14251720:-] 0.4540 120 6 -4.37 -0.3029 MIMAT0005022 dme-miR-1009 42226 fru gacUUUACAUUGUUAAAAACUcu :||| |||: | |||||| aaaGAAUAUAAUUA-UUUUGAaa 3 21 196 217 [dm3:3R:14256952-14256973:-] 0.5155 142 0 -4.65 -0.3173 MIMAT0011784 dme-miR-2279* 42226 fru uuaaagugugUGUCUAUAAAUu | | ||||||| ccgaaaaguaAAAUAUAUUUAg 2 13 86 107 [dm3:3R:14257062-14257083:-] 0.5243 144 7 -4.30 -1.0463 MIMAT0011786 dme-miR-2280 42226 fru uauaaAAUAACGGU-UCGAUUCu | :|| :|| ||||||| ucgaaUGGUUUUCACAGCUAAGu 2 18 54 76 [dm3:3R:14251791-14251813:-] 0.4689 152 7 -11.90 -0.4177 MIMAT0011787 dme-miR-2280* 42226 fru agucaaucgaaccUUCAUUUaa ||||||| uuaaauguccgaaAAGUAAAau 3 10 78 99 [dm3:3R:14257070-14257091:-] 0.5243 125 0 -3.78 -0.1645 MIMAT0011791 dme-miR-2283 42226 fru uaacagcauaaguacuAUAAAAg |||||| aauaaaagaauauaauUAUUUUg 2 8 192 214 [dm3:3R:14256955-14256977:-] 0.5254 120 6 -1.88 -0.4652 MIMAT0012198 dme-miR-2491 42226 fru ucGUUGACGU-UUC--CGUUGUCGc ||:| ||| :|| |||||||| agCAGCAGCAGGAGCAGCAACAGCa 2 21 86 110 [dm3:3R:14242389-14242413:-] 0.5186 162 7 -23.98 -0.2871 MIMAT0012198 dme-miR-2491 42226 fru ucGUUGACGUUUCCGUUGUCGc :| | |||: |||||||| uuUACCAGCAGCAGCAACAGCc 2 21 41 62 [dm3:3R:14242437-14242458:-] 0.5164 160 7 -17.55 -0.1462 MIMAT0012198 dme-miR-2491 42226 fru ucGUUGACGU-UUC--CGUUGUCGc ||:| ||| || |||||||| auCAGCCGCAUCAGCAGCAACAGCa 2 21 119 143 [dm3:3R:14242356-14242380:-] 0.5208 158 7 -19.75 -0.5789 MIMAT0012198 dme-miR-2491 42226 fru ucgUUGACGUUUCCGUUGUCGc :| || ::|| ||||||| ccaGAGUGAGGAGCCAACAGCc 2 20 107 128 [dm3:3R:14251739-14251760:-] 0.4689 159 7 -16.01 -0.1450 MIMAT0012198 dme-miR-2491 42226 fru ucguugacGUUUCCG-UUGUCGc |||| || |||||| acuaugaaCAAAAGCAAACAGCa 2 15 129 151 [dm3:3R:14257018-14257040:-] 0.5193 126 6 -12.68 -0.9379 MIMAT0012199 dme-miR-2492 42226 fru aaacuUUCGAGAGCUGUUUUGUa |:|| | :||||||| ucucuAGGCAGGCAGCAAAACAa 2 19 6 28 [dm3:3R:14251839-14251861:-] 0.5415 150 7 -11.40 -1.2973 MIMAT0012199 dme-miR-2492 42226 fru aaACUUUCGAGAGCUGUUUUGUa | || || || | |||||| uaUAAACCCUAUC-AGAAAACAg 2 22 167 188 [dm3:3R:14251679-14251700:-] 0.4229 127 6 -5.76 -0.1767 MIMAT0012199 dme-miR-2492 42226 fru aaACUUUCGA-GA-GC-UGUUUU-GUa ||: |||| || :| |||||| || cuUGGCAGCUACUAUGAACAAAAGCAa 2 22 119 145 [dm3:3R:14257024-14257050:-] 0.5243 126 0 -15.09 -0.8859 MIMAT0012201 dme-miR-2493 42226 fru ugcGGAGCGUGUUU-AUGUGUGcc |: | ::||| |||||| cuaCUACAAGUAAACCACACACaa 3 21 72 95 [dm3:3R:14256451-14256474:-] 0.5538 127 0 -12.05 -0.1376 MIMAT0000319 dme-miR-263a 42226 fru cacuuaagaaggucacgGUAAUUg |||||| uuagccauaggcauuagCAUUAAg 2 8 41 64 [dm3:3R:14257105-14257128:-] 0.5569 120 6 -12.25 -0.1367 MIMAT0000319 dme-miR-263a 42226 fru cacuuaagaaggucacgGUAAUUg |||||| aacaauaaacugagaagCAUUAAu 2 8 171 194 [dm3:3R:14256975-14256998:-] 0.5254 120 6 -6.19 -0.3029 MIMAT0000347 dme-miR-283 42226 fru ucuuaauggucgacUAUAAAu |||||| ccgaaaaguaaaauAUAUUUa 2 8 86 106 [dm3:3R:14257063-14257083:-] 0.5243 120 6 -2.75 -0.1339 MIMAT0000351 dme-miR-124 42226 fru gaACCGUAAGU-GGCGCA-CGGAAu || ||||:| || :|| ||||| auUGCCAUUUAGCCAUGUAGCCUUa 2 22 14 38 [dm3:3R:14256508-14256532:-] 0.5072 136 0 -22.14 -0.3247 MIMAT0000390 dme-miR-304 42226 fru gaGUGUAAAUGUUUAACUCUAAu :|:| |||: |||| ||| aaUAUAAUUAU--UUUGAAAUUa 2 22 200 220 [dm3:3R:14256949-14256969:-] 0.5155 122 0 -7.03 -0.3363 MIMAT0000407 dme-miR-315 42226 fru cgaaagacUCG--UUG-UUAGUUUu ||| ||| ||||||| aggcaggcAGCAAAACAAAUCAAAu 2 15 11 35 [dm3:3R:14251832-14251856:-] 0.5415 148 7 -10.72 -1.2530 MIMAT0000408 dme-miR-316 42226 fru gcggucauucgccuUUUUCUgu |||||| ugagaagcauuaauAAAAGAau 3 9 181 202 [dm3:3R:14256967-14256988:-] 0.5254 120 0 -7.74 -0.3247 MIMAT0000410 dme-miR-318 42226 fru acucUAUUUGUUUCGGG-UCACu :|:: |:::|||| |||| gggcGUGGCCGGGGCCCAAGUGc 2 19 1 23 [dm3:3R:14242476-14242498:-] 0.6092 122 0 -23.12 -0.3686 MIMAT0000412 dme-miR-iab-4-5p 42226 fru agUCCUAUGUAAGU---CAUAUGCa || || || || ||||||| caAGAAU-CAAGCAAACGUAUACGu 2 21 80 103 [dm3:3R:14251764-14251787:-] 0.4689 145 7 -11.99 -0.6333 MIMAT0005463 dme-miR-iab-4as-5p 42226 fru gccauauggaaguCAUAUGCAUu ||||||||| gaaucaagcaaacGUAUACGUAa 2 11 83 105 [dm3:3R:14251762-14251784:-] 0.4689 150 7 -15.40 -0.8746 MIMAT0005467 dme-miR-190 42226 fru guugGUUCUUAUAGUUUGUAUAGa ||:| | : ||||| ||| uaggCAGGCA-GCAAAACAAAUCa 2 21 10 32 [dm3:3R:14251835-14251857:-] 0.5415 122 0 -10.58 -0.2532 MIMAT0005471 dme-miR-958 42226 fru uuucaucuUAUCUUCUUAGAGu | | ||||||||: aaccacacACAAAAGAAUCUUc 2 15 84 105 [dm3:3R:14256441-14256462:-] 0.5285 138 0 -9.05 -0.1401 MIMAT0005487 dme-miR-971 42226 fru agugaCAUUCUUC-AUUGU-GGUu ||:||:|| |||| ||| ccagaGUGAGGAGCCAACAGCCAu 2 18 107 130 [dm3:3R:14251737-14251760:-] 0.4689 124 0 -17.65 -0.3226 MIMAT0005492 dme-miR-976 42226 fru cguaacuacUAUUGAUUAGGUu ||| ||||||| agcaaacguAUACGUAAUCCAg 2 14 89 110 [dm3:3R:14251757-14251778:-] 0.4689 149 7 -12.43 -0.2011 MIMAT0005496 dme-miR-980 42226 fru auucGGGAAGUGUUCCGUCGau |:|| :| ||||||| acuuCUCUAGGC-AGGCAGCaa 3 19 3 23 [dm3:3R:14251844-14251864:-] 0.5415 132 0 -17.64 -0.3988 MIMAT0005496 dme-miR-980 42226 fru auucgggaagUGUUCCGUCGAu || ||||||| uaaccuaagaACUUGGCAGCUa 2 13 108 129 [dm3:3R:14257040-14257061:-] 0.5243 144 7 -20.87 -1.1943 MIMAT0005504 dme-miR-987 42226 fru guAGUUA-GGUCUGAUA--AAUGAAAu |:||| ||| ||| |||:||| caUUAAUAAAAGAAUAUAAUUAUUUUg 2 23 188 214 [dm3:3R:14256955-14256981:-] 0.5254 144 0 -13.58 -0.1411 MIMAT0005507 dme-miR-137 42226 fru gaugcacauaagaguUCGUUAu |||||| aacuauagcaacuacAGCAAUa 2 8 163 184 [dm3:3R:14242315-14242336:-] 0.5208 120 6 -9.99 -0.1983 MIMAT0005520 dme-miR-1000 42226 fru ugacgacacuguccUGUUAUa |||||| uuggcgaaaauugaACAAUAa 2 8 158 178 [dm3:3R:14256991-14257011:-] 0.5199 120 6 -5.69 -0.1231

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score fru RAID00125128 dme-miR-987-5p miRNA MIMAT0005504 fru mRNA 42226 Prediction 0.1828 fru RAID00133027 dme-miR-190-5p miRNA MIMAT0005467 fru mRNA 42226 Prediction 0.1828 fru RAID00197819 dme-miR-283-5p miRNA MIMAT0000347 fru mRNA 42226 Prediction 0.1828 fru RAID00235109 dme-miR-316-5p miRNA MIMAT0000408 fru mRNA 42226 Prediction 0.1828 fru RAID00483745 dme-miR-1017-3p miRNA MIMAT0005030 fru mRNA 42226 Prediction 0.1828 fru RAID00576268 dme-miR-1000-5p miRNA MIMAT0005520 fru mRNA 42226 Prediction 0.2202 fru RAID00679572 dme-miR-124-3p miRNA MIMAT0000351 fru mRNA 42226 Prediction 0.1828 fru RAID00688165 dme-miR-315-5p miRNA MIMAT0000407 fru mRNA 42226 Prediction 0.2381 fru RAID00789970 dme-miR-277-3p miRNA MIMAT0000338 fru mRNA 42226 Prediction 0.2202 fru RAID00834696 dme-miR-1011-3p miRNA MIMAT0005024 fru mRNA 42226 Prediction 0.1828 fru RAID00845621 dme-miR-966-5p miRNA MIMAT0005481 fru mRNA 42226 Prediction 0.1828 fru RAID01161875 dme-miR-306-5p miRNA MIMAT0000393 fru mRNA 42226 Prediction 0.1828 fru RAID01349337 dme-miR-1007-3p miRNA MIMAT0005020 fru mRNA 42226 Prediction 0.1828 fru RAID01497114 dme-miR-313-3p miRNA MIMAT0000405 fru mRNA 42226 Prediction 0.1828 fru RAID01567322 dme-miR-318-3p miRNA MIMAT0000410 fru mRNA 42226 Prediction 0.1828 fru RAID01634552 dme-miR-iab-8-5p miRNA MIMAT0005463 fru mRNA 42226 Prediction 0.1828 fru RAID01673511 dme-miR-960-5p miRNA MIMAT0005474 fru mRNA 42226 Prediction 0.2202 fru RAID01796809 dme-miR-958-3p miRNA MIMAT0005471 fru mRNA 42226 Prediction 0.1828 fru RAID01918788 dme-miR-312-3p miRNA MIMAT0000404 fru mRNA 42226 Prediction 0.1828 fru RAID02202255 dme-miR-957-3p miRNA MIMAT0005470 fru mRNA 42226 Prediction 0.2202 fru RAID02253202 dme-miR-982-5p miRNA MIMAT0005498 fru mRNA 42226 Prediction 0.1828 fru RAID02265869 dme-miR-137-3p miRNA MIMAT0005507 fru mRNA 42226 Prediction 0.1828 fru RAID02336131 dme-miR-311-3p miRNA MIMAT0000403 fru mRNA 42226 Prediction 0.1828 fru RAID02359163 dme-miR-263b-5p miRNA MIMAT0000362 fru mRNA 42226 Prediction 0.2202 fru RAID02372420 dme-mir-iab-8 miRNA MI0005805 fru mRNA 42226 Prediction 0.1828 fru RAID02417255 dme-miR-iab-4-5p miRNA MIMAT0000412 fru mRNA 42226 Prediction 0.1828 fru RAID02451485 dme-miR-304-5p miRNA MIMAT0000390 fru mRNA 42226 Prediction 0.1828 fru RAID02658463 dme-miR-981-3p miRNA MIMAT0005497 fru mRNA 42226 Prediction 0.1828 fru RAID02757208 dme-miR-310-3p miRNA MIMAT0000402 fru mRNA 42226 Prediction 0.1828 fru RAID02761669 dme-miR-92a-3p miRNA MIMAT0000334 fru mRNA 42226 Prediction 0.1828 fru RAID03064003 dme-miR-275-3p miRNA MIMAT0000333 fru mRNA 42226 Prediction 0.1828 fru RAID03094777 dme-miR-980-3p miRNA MIMAT0005496 fru mRNA 42226 Prediction 0.1828 fru RAID03164528 dme-miR-969-5p miRNA MIMAT0005485 fru mRNA 42226 Prediction 0.2202 fru RAID03506322 dme-miR-971-3p miRNA MIMAT0005487 fru mRNA 42226 Prediction 0.2202 fru RAID03573810 dme-miR-976-3p miRNA MIMAT0005492 fru mRNA 42226 Prediction 0.2202 fru RAID03815572 dme-miR-263a-5p miRNA MIMAT0000319 fru mRNA 42226 Prediction 0.1828 fru RAID03818944 dme-miR-92b-3p miRNA MIMAT0000358 fru mRNA 42226 Prediction 0.2202