DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 38006 gol gccccgcucucuUACUAUUcc ||||||| uaauuauaaguuAUGAUAAaa 3 10 374 394 [dm3:2R:20962047-20962067:-] 0.4687 125 0 -5.43 -0.1790 MIMAT0000343 dme-miR-280 38006 gol auaGUAAAGUAUACGUUG-CAUUUAUgu | ||| :| | : |: |||||| uugCUUUUAGUUUUUUAUAUUAAAUAaa 3 25 894 921 [dm3:2R:20961520-20961547:-] 0.5312 131 0 -4.90 -0.2092 MIMAT0000343 dme-miR-280 38006 gol auaGUAAAGUAUACGUUGCA-UUUAUGu :|||| | |||: | |||||| augUAUUUAAGCAACAAUAUAAAAUACc 2 25 528 555 [dm3:2R:20961886-20961913:-] 0.4914 128 6 -8.49 -0.6118 MIMAT0000363 dme-miR-288 38006 gol guACUUUACUUUAGCUGU-ACUUu | |||| ||| ||| |||| ccUUAAAUUCAAU--ACACUGAAa 2 22 688 709 [dm3:2R:20961732-20961753:-] 0.4742 122 0 -5.10 -1.1607 MIMAT0000364 dme-miR-289 38006 gol ucagcgucCGAG-GUGAAUUU-AUAAAu |||| :|| |||| ||||| uuuuuauaGCUCAUACAUAAAUUAUUUa 2 19 991 1018 [dm3:2R:20961423-20961450:-] 0.4509 133 0 -11.89 -1.2012 MIMAT0000388 dme-miR-303 38006 gol uggucaaaggacacuuUGGAUUu |||||| ugaauuuugagaauuuACCUAA- 2 8 1230 1251 [dm3:2R:20961190-20961211:-] 0.5119 120 6 -9.24 -0.1560 MIMAT0005473 dme-miR-959 38006 gol aaguauuauggGGGCUACUGUu || ||||||| gggagagagagCCAGAUGACAg 2 12 401 422 [dm3:2R:20960367-20960388:-] 0.6196 147 7 -14.90 -0.1675 MIMAT0005489 dme-miR-973 38006 gol uuUUAGC-UUCAAGUUGGUGGU-UGGu ||| | || | ||||||| ||| ucAAUAGUCAGCUAUACCACCAGACCa 2 24 74 100 [dm3:2R:20962341-20962367:-] 0.5110 130 0 -19.76 -1.0871 MIMAT0005499 dme-miR-983 38006 gol agUAAUCAA---GCUUUGCAUAAUa ||| | | | || :|||||| uuAUUUGAUGAACCAAUUGUAUUAa 2 21 499 523 [dm3:2R:20960266-20960290:-] 0.4749 135 6 -7.04 -0.1195 MIMAT0005499 dme-miR-983 38006 gol agUAAUCAA---GCUUUGCAUAAUa ||| | | | || :|||||| uuAUUUGAUGAACCAAUUGUAUUAa 2 21 16 40 [dm3:2R:20960266-20960290:-] 0.4749 135 6 -7.04 -0.1624 MIMAT0005499 dme-miR-983 38006 gol aguaaucaagcUUUGCAUAAUa || :|||||| aacuuuuaaaaAAUUGUAUUAg 2 12 62 83 [dm3:2R:20960223-20960244:-] 0.4683 131 6 -4.43 -0.1023 MIMAT0005500 dme-miR-984 38006 gol uuUAAGGUUGGCAUAAAUGGAgu |||:::| | |||||||| gaAUUUUGA--GAAUUUACCUaa 3 22 1231 1251 [dm3:2R:20961190-20961210:-] 0.5119 142 0 -10.25 -0.2489 MIMAT0005502 dme-miR-985 38006 gol acgggcuggUAACCUUGUAAAc |||| ||||||| uaaauaaaaAUUGAAACAUUUu 2 14 914 935 [dm3:2R:20961506-20961527:-] 0.4688 157 7 -7.59 -1.0576 MIMAT0005509 dme-miR-991 38006 gol ugaaAGGUUUGAU-GUUGAAAuu ||:| :|| |||||| cgcaUCUAUCUUAGAAACUUUua 3 19 530 552 [dm3:2R:20960237-20960259:-] 0.4683 129 0 -8.23 -0.1793 MIMAT0005509 dme-miR-991 38006 gol ugaaAGGUUUGAU-GUUGAAAuu ||:| :|| |||||| cgcaUCUAUCUUAGAAACUUUua 3 19 47 69 [dm3:2R:20960237-20960259:-] 0.4683 129 0 -8.23 -0.2317 MIMAT0005521 dme-miR-1001 38006 gol acUAGGAACCCUCAAAUGGGu | ::||| || ||||||: ugAAUUUUGAGAAUUUACCUa 2 20 1230 1250 [dm3:2R:20961191-20961211:-] 0.5119 147 0 -16.20 -0.2925 MIMAT0005018 dme-miR-1005 38006 gol gacgcUUAAU--UUCUAAGGUcu ||||| | |||||| acauaAAUUAUUUAUAUUCCAuu 3 17 1005 1027 [dm3:2R:20961414-20961436:-] 0.4509 131 0 -6.07 -0.1140 MIMAT0005022 dme-miR-1009 38006 gol gacUUUACAUUGUUAAAAACUCu ||| || ::| ||||||| aauAAACAUAUUGAAUUUUGAGa 2 21 1219 1241 [dm3:2R:20961200-20961222:-] 0.5119 160 7 -9.62 -1.2796 MIMAT0005022 dme-miR-1009 38006 gol gacUUUACAUUGUUAAAAACUCu | :| | |:| ||||||| auaACGUUUUAUACGUUUUGAGu 2 21 1087 1109 [dm3:2R:20961332-20961354:-] 0.4338 152 7 -10.24 -0.4393 MIMAT0005026 dme-miR-1013 38006 gol gcucaagccgUAUGAAAAUa | ||||||| ucuaucuuagAAACUUUUAa 2 11 534 553 [dm3:2R:20960236-20960255:-] 0.4683 142 7 -5.17 -1.2306 MIMAT0005026 dme-miR-1013 38006 gol gcucaagccguAUGAAAAUa |:|||||| gccaaaguauuUGCUUUUAg 2 10 884 903 [dm3:2R:20961538-20961557:-] 0.5937 129 6 -5.53 -0.2384 MIMAT0005026 dme-miR-1013 38006 gol gcUCAAGCC--GUAUG-AAAAUa ||||: | ||||| ||||| uuAGUUUAGAUCAUACAUUUUAu 2 19 1034 1056 [dm3:2R:20961385-20961407:-] 0.4331 129 0 -10.28 -0.9753 MIMAT0005026 dme-miR-1013 38006 gol gcucaagccgUAUGAAAAUa | ||||||| ucuaucuuagAAACUUUUAa 2 11 51 70 [dm3:2R:20960236-20960255:-] 0.4683 142 7 -5.17 -1.2646 MIMAT0005028 dme-miR-1015 38006 gol gacguucucucuacAGGGUCCu ||||||| uccuugcgcucacuUCCCAGGa 2 9 343 364 [dm3:2R:20960425-20960446:-] 0.6196 140 7 -18.62 -0.9765 MIMAT0011784 dme-miR-2279* 38006 gol uuaaAGUGUGUGUCU-AUAAAUu |||:|||:| | |||||| uagcUCAUACAUAAAUUAUUUAu 2 19 997 1019 [dm3:2R:20961422-20961444:-] 0.4509 138 6 -12.44 -1.0282 MIMAT0011785 dme-miR-2279 38006 gol uuuauuuauagaagCGCACUUu ||||||| ucacggcaacggcaGCGUGAAa 2 9 265 286 [dm3:2R:20960503-20960524:-] 0.6196 140 7 -14.03 -0.7329 MIMAT0011789 dme-miR-2281 38006 gol cgUUAUGACGU----CUAUGUCUAu |||| |||| |:||||||| ucAAUA-UGCAUUUUGGUACAGAUu 2 20 237 260 [dm3:2R:20962181-20962204:-] 0.4719 156 7 -19.51 -0.2282 MIMAT0011790 dme-miR-2282 38006 gol uaagAUAAAAAUCGAGUGGCUa ||| || ||||||| uaaaUAUAGCAAGAUCACCGAc 2 19 779 800 [dm3:2R:20961641-20961662:-] 0.4535 150 7 -13.62 -0.3434 MIMAT0011791 dme-miR-2283 38006 gol uaacagcauaaguacUAUAAAAg ||||||| gcgaaugugcagccuAUAUUUUu 2 9 276 298 [dm3:2R:20962143-20962165:-] 0.4719 140 7 -7.34 -0.2244 MIMAT0012196 dme-miR-2489 38006 gol ugACGUUUAUGUUGUAUGU-UAu |||||||| || ||||| || ggUGCAAAUA-AA-AUACAUAUc 2 21 583 603 [dm3:2R:20960186-20960206:-] 0.4616 136 0 -12.82 -0.5971 MIMAT0012196 dme-miR-2489 38006 gol ugacguUUAUGUUGUAUGUUAu ||||| | ||||||| aaauuuAAUACCA-AUACAAUu 2 17 707 727 [dm3:2R:20961714-20961734:-] 0.4742 158 7 -9.52 -0.8874 MIMAT0012196 dme-miR-2489 38006 gol ugACGUUUAUGUUGUAUGU-UAu |||||||| || ||||| || ggUGCAAAUA-AA-AUACAUAUc 2 21 100 120 [dm3:2R:20960186-20960206:-] 0.4616 136 0 -12.82 -0.4089 MIMAT0012204 dme-miR-2495 38006 gol ucaGUCGGGUUA--ACUUCA-CGGu ||||:| || ||||| ||| ccgCAGCUCCAUAGCGAAGUCGCCc 2 20 178 202 [dm3:2R:20960587-20960611:-] 0.6196 126 0 -20.81 -0.3262 MIMAT0012205 dme-miR-2495* 38006 gol ccGCCCGUAAAGUUAAUCCACGGc | | || ||| ||||||| ugCUGUAAUAUCA--CAGGUGCCa 2 23 866 887 [dm3:2R:20961554-20961575:-] 0.5937 147 7 -14.30 -1.0787 MIMAT0012208 dme-miR-2497* 38006 gol uuGUUGAUGUAAAACGUUACGAAUg :| :|||||| | :| |||||| ugUACUUACAUUAU-UAUUGCUUAa 2 24 938 961 [dm3:2R:20961480-20961503:-] 0.4688 141 6 -11.88 -0.1671 MIMAT0012208 dme-miR-2497* 38006 gol uuGUU-GAUGUAAAACGUUAC--GAAUg ||: |||:||||| ||||| |||| ugCAGCCUAUAUUUUUCAAUGCCCUUAc 2 24 283 310 [dm3:2R:20962131-20962158:-] 0.4719 138 0 -21.12 -0.7880 MIMAT0012216 dme-miR-2501 38006 gol aaucggguccGUGAGGUUUGAAUg ||:|: |||||| auuuauauucCAUUUAUAACUUAg 2 15 1014 1037 [dm3:2R:20961404-20961427:-] 0.4509 122 6 -11.00 -0.1132 MIMAT0012216 dme-miR-2501 38006 gol aaUCGGGUCCGU-GAG-GUUUGAAug | | || :| ||: |||||| guAACGCAUCUAUCUUAGAAACUUuu 3 23 43 68 [dm3:2R:20960238-20960263:-] 0.4749 124 0 -9.49 -0.1113 MIMAT0000108 dme-miR-3 38006 gol acUCUGUG--UGAAACGGGUCACu ||:::: || || |||||| aaAGGUGUGGACCUUAACCAGUGa 2 21 460 483 [dm3:2R:20960306-20960329:-] 0.5473 123 6 -17.73 -0.1066 MIMAT0000319 dme-miR-263a 38006 gol cacUUAAGAAGGUCACGGUAAUUg ||| || :| | ||||||| ucaAAUGCUGUC--U-CCAUUAAg 2 22 31 51 [dm3:2R:20960738-20960758:-] 0.6196 148 7 -8.47 -0.5993 MIMAT0000338 dme-miR-277 38006 gol acagCAU-GGUCUAUCACGUAAAu ||| :|| ||| ||||||| guaaGUAGUCA-AUA-UGCAUUUu 2 20 229 250 [dm3:2R:20962191-20962212:-] 0.4719 154 7 -10.65 -0.5442 MIMAT0000338 dme-miR-277 38006 gol acAGCAUGGUCUAUCACGUAAAu |||| : ||| ||||||| auUCGU--UUGAU--UGCAUUUa 2 22 961 979 [dm3:2R:20961462-20961480:-] 0.4688 147 7 -13.33 -1.1725 MIMAT0000348 dme-miR-284 38006 gol guuaaCGACCUUAGUUCAACGACUGAAGu || | : ||||| :||||||| caacgGCAGCGUGAAAGUU-UUGACUUCg 2 25 271 298 [dm3:2R:20960491-20960518:-] 0.6196 158 7 -20.49 -0.3318 MIMAT0000356 dme-miR-285 38006 gol cgugacuaaAGCUUACC-ACGAu |||| ||| |||| gggcgcuacUCGACUGGAUGCUu 2 14 106 128 [dm3:2R:20960661-20960683:-] 0.6196 121 0 -20.24 -0.2554 MIMAT0000362 dme-miR-263b 38006 gol caCUUAAGAGGGU-CACGGUUc | | | || || ||||||| cuGUAAUAUCACAGGUGCCAAa 2 20 868 889 [dm3:2R:20961552-20961573:-] 0.5937 154 7 -13.40 -0.8958 MIMAT0000401 dme-miR-309 38006 gol auCCUGUUUGAAAUGGGUCACg | ::::|| ||| |||||| agGUGUGGACCUUAACCAGUGa 2 21 462 483 [dm3:2R:20960306-20960327:-] 0.5473 136 6 -17.55 -0.1066 MIMAT0000410 dme-miR-318 38006 gol acucuauuuguuucgGGUCACu |||||| agguguggaccuuaaCCAGUGa 2 8 462 483 [dm3:2R:20960306-20960327:-] 0.5473 120 6 -18.44 -0.1066 MIMAT0005467 dme-miR-190 38006 gol guugguucUUAUAGUUUGUAUAGa |||| | ||||||| agggugcaAAUAAAAUACAUAUCu 2 17 581 604 [dm3:2R:20960185-20960208:-] 0.4616 156 7 -12.18 -0.7496 MIMAT0005467 dme-miR-190 38006 gol guugguucUUAUAGUUUGUAUAGa |||| | ||||||| agggugcaAAUAAAAUACAUAUCu 2 17 98 121 [dm3:2R:20960185-20960208:-] 0.4616 156 7 -12.18 -1.0216 MIMAT0005472 dme-miR-375 38006 gol auuGAAUUCGGU--UUGCUUGUUu | | | |:| |||||||| uauCGUCAACUACCCACGAACAAg 2 20 3 26 [dm3:2R:20962415-20962438:-] 0.4889 146 7 -14.67 -0.2048 MIMAT0005480 dme-miR-965 38006 gol uuccccuUUUCG-AUAUGCGAAu ||||: | |||||| -----uuAAAGUGCAAACGCUUa 2 16 1 18 [dm3:2R:20960288-20960305:-] 0.4749 122 6 -12.37 -0.1047 MIMAT0005483 dme-miR-1002 38006 gol agcgggaaacauaggugAUGAAUu |||||| auugaaacauuuuuaugUACUUAc 2 8 923 946 [dm3:2R:20961495-20961518:-] 0.4688 120 6 -8.69 -0.1700 MIMAT0005486 dme-miR-970 38006 gol uaucggcgcacacAGAAUACu ||||||| gaguaacgaaaaaUCUUAUGg 2 9 403 423 [dm3:2R:20962018-20962038:-] 0.4963 140 7 -12.66 -0.8216 MIMAT0005493 dme-miR-977 38006 gol aaUCUGUUGCACUUAUAGAGu | |:|| | ||||||| gcAAAUAAAAUACAUAUCUCg 2 20 586 606 [dm3:2R:20960183-20960203:-] 0.4616 151 7 -10.31 -0.6110 MIMAT0005493 dme-miR-977 38006 gol aaUCUGUUGCACUUAUAGAGu | |:|| | ||||||| gcAAAUAAAAUACAUAUCUCg 2 20 103 123 [dm3:2R:20960183-20960203:-] 0.4616 151 7 -10.31 -0.4724 MIMAT0005507 dme-miR-137 38006 gol gaUGCACAUAAGAGUUCGUUau || ||||| |:|||||| uuACAUGUAU--UUAAGCAAca 3 21 524 543 [dm3:2R:20961898-20961917:-] 0.4914 145 0 -13.44 -0.1888 MIMAT0005516 dme-miR-252 38006 gol gaggacgcCGUGAUCAUGAAUc ||| | ||||||| auuuaagaGCAGU-GUACUUAa 2 15 452 472 [dm3:2R:20961969-20961989:-] 0.4963 148 7 -11.32 -0.9634 MIMAT0005516 dme-miR-252 38006 gol gaggacgccguGAU-CAUGAAUc :|| ||||||| uugaaacauuuUUAUGUACUUAc 2 12 924 946 [dm3:2R:20961495-20961517:-] 0.4688 142 7 -10.18 -1.0989 MIMAT0005016 dme-miR-1003 38006 gol gacaCUUAUACAUUUACAC-UCu |: |||| :|||||| || cacaGGUUAUGCGAAUGUGCAGc 2 19 266 288 [dm3:2R:20962153-20962175:-] 0.4719 130 0 -13.16 -0.5642 MIMAT0005023 dme-miR-1010 38006 gol gaCGUUUACCUUGCUAUC-CACUUu |: | | ||||: || ||||| caGUCACGGCAACGGCAGCGUGAAa 2 23 262 286 [dm3:2R:20960503-20960527:-] 0.6196 126 0 -18.29 -0.6479 MIMAT0005024 dme-miR-1011 38006 gol gacgcucgcUAAACU-UGGUUAUu |||| | ||||||| uacacugaaAUUUAAUACCAAUAc 2 15 700 723 [dm3:2R:20961718-20961741:-] 0.4742 153 7 -10.00 -1.0405 MIMAT0005024 dme-miR-1011 38006 gol gacgcucgcuaaacUUGGUUAUu :||||||| cagcuauaccaccaGACCAAUAu 2 10 82 104 [dm3:2R:20962337-20962359:-] 0.5110 141 7 -7.89 -0.4931 MIMAT0005024 dme-miR-1011 38006 gol gacgcucgcuaaacuuGGUUAUu |||||| auauuaaagaacaaccCCAAUAa 2 8 1201 1223 [dm3:2R:20961218-20961240:-] 0.5119 120 6 -6.69 -0.1005 MIMAT0005027 dme-miR-1014 38006 gol gacGUUUACUU---UUACUUAAAa | ||| || | ||||||| accCCAAUAAACAUAUUGAAUUUu 2 19 1214 1237 [dm3:2R:20961204-20961227:-] 0.5119 149 7 -5.56 -1.0883 MIMAT0005027 dme-miR-1014 38006 gol gacguuuacuuuuACUUAAAa ||||||| ccgaguaguuucuUGAAUUUg 2 9 1123 1143 [dm3:2R:20961298-20961318:-] 0.4470 140 7 -7.34 -0.5395

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score gol RAID00103057 dme-miR-310-3p miRNA MIMAT0000402 gol mRNA 38006 Prediction 0.1828 gol RAID00115588 dme-miR-92a-3p miRNA MIMAT0000334 gol mRNA 38006 Prediction 0.1828 gol RAID00138902 dme-miR-996-3p miRNA MIMAT0005515 gol mRNA 38006 Prediction 0.2202 gol RAID00201745 dme-mir-iab-4 miRNA MI0000432 gol mRNA 38006 Prediction 0.1828 gol RAID00519232 dme-miR-977-3p miRNA MIMAT0005493 gol mRNA 38006 Prediction 0.1828 gol RAID00614743 dme-miR-1002-5p miRNA MIMAT0005483 gol mRNA 38006 Prediction 0.2202 gol RAID00703388 dme-miR-33-5p miRNA MIMAT0000342 gol mRNA 38006 Prediction 0.2202 gol RAID00990155 dme-miR-1014-3p miRNA MIMAT0005027 gol mRNA 38006 Prediction 0.2202 gol RAID01004044 dme-miR-1006-3p miRNA MIMAT0005019 gol mRNA 38006 Prediction 0.1828 gol RAID01141893 dme-miR-375-3p miRNA MIMAT0005472 gol mRNA 38006 Prediction 0.2202 gol RAID01192157 dme-miR-263a-5p miRNA MIMAT0000319 gol mRNA 38006 Prediction 0.1828 gol RAID01196217 dme-miR-284-3p miRNA MIMAT0000348 gol mRNA 38006 Prediction 0.1828 gol RAID01206797 dme-miR-92b-3p miRNA MIMAT0000358 gol mRNA 38006 Prediction 0.1828 gol RAID01242831 dme-miR-3-3p miRNA MIMAT0000108 gol mRNA 38006 Prediction 0.1828 gol RAID01299261 dme-miR-970-3p miRNA MIMAT0005486 gol mRNA 38006 Prediction 0.2202 gol RAID01566434 dme-miR-190-5p miRNA MIMAT0005467 gol mRNA 38006 Prediction 0.1828 gol RAID01907657 dme-miR-1009-3p miRNA MIMAT0005022 gol mRNA 38006 Prediction 0.1828 gol RAID02204235 dme-miR-277-3p miRNA MIMAT0000338 gol mRNA 38006 Prediction 0.2202 gol RAID02260556 dme-miR-1003-3p miRNA MIMAT0005016 gol mRNA 38006 Prediction 0.1828 gol RAID02272072 dme-miR-1011-3p miRNA MIMAT0005024 gol mRNA 38006 Prediction 0.2202 gol RAID02281757 dme-miR-252-5p miRNA MIMAT0005516 gol mRNA 38006 Prediction 0.2202 gol RAID02313465 dme-miR-286-3p miRNA MIMAT0000359 gol mRNA 38006 Prediction 0.1828 gol RAID02371320 dme-miR-985-3p miRNA MIMAT0005502 gol mRNA 38006 Prediction 0.1828 gol RAID02675670 dme-miR-1010-3p miRNA MIMAT0005023 gol mRNA 38006 Prediction 0.1828 gol RAID02687734 dme-miR-965-3p miRNA MIMAT0005480 gol mRNA 38006 Prediction 0.1828 gol RAID02941274 dme-miR-313-3p miRNA MIMAT0000405 gol mRNA 38006 Prediction 0.1828 gol RAID03013333 dme-miR-318-3p miRNA MIMAT0000410 gol mRNA 38006 Prediction 0.1828 gol RAID03064229 dme-miR-279-3p miRNA MIMAT0000341 gol mRNA 38006 Prediction 0.1828 gol RAID03361854 dme-miR-312-3p miRNA MIMAT0000404 gol mRNA 38006 Prediction 0.1828 gol RAID03414634 dme-miR-309-3p miRNA MIMAT0000401 gol mRNA 38006 Prediction 0.1828 gol RAID03480360 dme-miR-305-5p miRNA MIMAT0000391 gol mRNA 38006 Prediction 0.1828 gol RAID03677125 dme-miR-285-3p miRNA MIMAT0000356 gol mRNA 38006 Prediction 0.1828 gol RAID03710498 dme-miR-137-3p miRNA MIMAT0005507 gol mRNA 38006 Prediction 0.1828 gol RAID03750956 dme-miR-311-3p miRNA MIMAT0000403 gol mRNA 38006 Prediction 0.1828 gol RAID03793928 dme-miR-263b-5p miRNA MIMAT0000362 gol mRNA 38006 Prediction 0.2381