DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 33565 msl-2 ucagcguccgaGGUGAAUUUAUAAau |:|:| ||||||| cgaacauauaaCUAUUAAAAUAUUca 3 16 997 1022 [dm3:2L:3462244-3462269:-] 0.4666 139 0 -7.74 -0.1657 MIMAT0005488 dme-miR-972 33565 msl-2 cggAUUUAUAAGCAUAAC-AUGu |||| || | |||| ||| aaaUAAAAAUGAGCAUUGCUACu 2 20 1022 1044 [dm3:2L:3462222-3462244:-] 0.4666 127 0 -5.82 -0.3922 MIMAT0005498 dme-miR-982 33565 msl-2 uaaAUGAAGUAUAAACAGGUCCu |:| ||| |||||||| augUGC-UCAGUGAUGUCCAGGu 2 21 35 56 [dm3:2L:3463210-3463231:-] 0.4892 150 7 -19.87 -0.9364 MIMAT0005499 dme-miR-983 33565 msl-2 aguAAUCAAGCUUUGCAUAAUa || ||: | |||||||| auuUUUUUUUAAUACGUAUUAa 2 20 677 698 [dm3:2L:3462568-3462589:-] 0.4886 159 7 -7.89 -1.1834 MIMAT0005509 dme-miR-991 33565 msl-2 ugAAAGGUUUG-AUGUUGA-AAUu | | |:||| ||:|||| ||| uaUAUGCGAACAUAUAACUAUUAa 2 21 991 1014 [dm3:2L:3462252-3462275:-] 0.4666 131 0 -13.22 -1.2716 MIMAT0005521 dme-miR-1001 33565 msl-2 acuagGAACCCUCAAAUGGGu ||||| |||||||| cagcgCUUGGUUGUUUACCCa 2 17 339 359 [dm3:2L:3462907-3462927:-] 0.3984 164 7 -24.06 -0.2375 MIMAT0005022 dme-miR-1009 33565 msl-2 gaCUU-UACAUUGUUAAAAACUCu ||: ||| ||: |||||||| uuGAGCAUG-AAU-UUUUUUGAGc 2 22 914 935 [dm3:2L:3462331-3462352:-] 0.4666 152 7 -12.96 -0.6425 MIMAT0005022 dme-miR-1009 33565 msl-2 gacuuuacaUUGUUAAAAACUCu :|| |||||||| auaggcuaaGACUUUUUUUGAGc 2 15 897 919 [dm3:2L:3462347-3462369:-] 0.4666 150 7 -10.21 -0.7031 MIMAT0011784 dme-miR-2279* 33565 msl-2 uuaaaGUGUGUGUCUAUAA-AUu :|:|:|| ||||| || agccaUAUAUACCCAUAUUAUAu 2 18 971 993 [dm3:2L:3462273-3462295:-] 0.4666 121 0 -8.29 -0.4519 MIMAT0011786 dme-miR-2280 33565 msl-2 uauAAAAUAACGGUUCGAUUCu |||| || :|:|||||| cuuUUUUUUUAAUAGGCUAAGa 2 20 864 885 [dm3:2L:3462381-3462402:-] 0.4666 151 6 -13.52 -0.1459 MIMAT0012199 dme-miR-2492 33565 msl-2 aaacUUUCGAGAGCUGUUUUGua ||||| :| | |||||| gaguAAAGCAUUAGUCAAAACua 3 20 764 786 [dm3:2L:3462480-3462502:-] 0.5213 147 0 -10.38 -0.1161 MIMAT0012208 dme-miR-2497* 33565 msl-2 uuGUUG-AUG-UAAAACGUUACGA-AUg :||| |:: :||| |: ||||| || uuUAACUUGUGGUUUCGUUAUGCUAUAu 2 24 543 570 [dm3:2L:3462696-3462723:-] 0.4830 125 0 -9.35 -0.7230 MIMAT0012215 dme-miR-2500 33565 msl-2 gacuccAGGUGUGUGUUU-UAGg || || | |||| ||| cucaaaUCAACUCCCAAAUAUCu 2 17 595 617 [dm3:2L:3462649-3462671:-] 0.4830 120 0 -5.78 -0.5263 MIMAT0000390 dme-miR-304 33565 msl-2 gagUGUAAAUGUU-UAACUCUAAu | | || || :|||||||| auaAAAGCUAGAAGGUUGAGAUUa 2 21 288 311 [dm3:2L:3462955-3462978:-] 0.4420 155 7 -13.54 -0.8432 MIMAT0000390 dme-miR-304 33565 msl-2 gaguGUAAAUGUUUAACUC-UAAu || || ||| |||| ||| uauuCAAAUA-AAAAUGAGCAUUg 2 20 1017 1039 [dm3:2L:3462227-3462249:-] 0.4666 121 0 -8.63 -1.0998 MIMAT0005463 dme-miR-iab-4as-5p 33565 msl-2 gccaUAUGGAAGUCAUAUGCAUu || ::||: ||||||| cucaAUUUUUUUUUAAUACGUAu 2 20 673 695 [dm3:2L:3462571-3462593:-] 0.4886 151 7 -9.19 -1.1007 MIMAT0005472 dme-miR-375 33565 msl-2 auUGAAUUCGGUUUGCUUGUuu |: | | :| :|||||| ccAUAUUAUAUAUGCGAACAua 3 21 983 1004 [dm3:2L:3462262-3462283:-] 0.4666 128 0 -8.78 -0.1204 MIMAT0005493 dme-miR-977 33565 msl-2 aaucuguugcacUUAUAGAGu |||||||| auuuuauuucccAAUAUCUCu 2 10 419 439 [dm3:2L:3462827-3462847:-] 0.3181 145 7 -7.71 -0.3676 MIMAT0005503 dme-miR-986 33565 msl-2 agucAGUGU-UGCGAUAAGC-UCu |||:| ||:|||||| || cuuaUCAUACCCGUUAUUCGUAGa 2 19 149 172 [dm3:2L:3463094-3463117:-] 0.4758 129 0 -20.14 -0.6709 MIMAT0005507 dme-miR-137 33565 msl-2 gaugcacAUAAGAGUUCGUUAu |||| | ||||||| acauaacUAUU-UAAAGCAAUu 2 16 713 733 [dm3:2L:3462533-3462553:-] 0.4566 153 7 -7.81 -0.7273 MIMAT0005514 dme-miR-995 33565 msl-2 uuCGGCUUAGUACACC-ACGAu ||| || |||||| |||| uuGCCCAA-AAUGUGGAUGCUg 2 20 828 848 [dm3:2L:3462418-3462438:-] 0.5213 129 0 -19.15 -0.5478 MIMAT0005520 dme-miR-1000 33565 msl-2 ugACGACACU-GUCCU-GUUAUa | || ||| ||||| ||||| uaUUCU-UGAUCAGGAUCAAUAg 2 20 218 239 [dm3:2L:3463027-3463048:-] 0.5288 128 0 -14.87 -0.2359 MIMAT0005027 dme-miR-1014 33565 msl-2 gacguuuACUUUUACUUAAAa |||: |||||||| cuuuuuuUGAGCAUGAAUUUu 2 15 908 928 [dm3:2L:3462338-3462358:-] 0.4666 158 7 -10.60 -0.6069

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score msl-2 RAID00662399 dme-miR-981-3p miRNA MIMAT0005497 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID00756687 dme-miR-304-5p miRNA MIMAT0000390 msl-2 mRNA 33565 Prediction 0.2202 msl-2 RAID00784653 dme-miR-977-3p miRNA MIMAT0005493 msl-2 mRNA 33565 Prediction 0.2202 msl-2 RAID01025666 dme-miR-969-5p miRNA MIMAT0005485 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID01275034 dme-miR-100-5p miRNA MIMAT0000357 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID01667311 dme-miR-1001-5p miRNA MIMAT0005521 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID01827990 dme-miR-375-3p miRNA MIMAT0005472 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID01891225 dme-miR-1009-3p miRNA MIMAT0005022 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID02347851 dme-bantam-3p miRNA MIMAT0000365 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID02637709 dme-miR-995-3p miRNA MIMAT0005514 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID02918799 dme-mir-2a-2 miRNA MI0000118 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID03004166 dme-miR-982-5p miRNA MIMAT0005498 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID03232352 dme-miR-137-3p miRNA MIMAT0005507 msl-2 mRNA 33565 Prediction 0.2202 msl-2 RAID03245378 dme-miR-986-5p miRNA MIMAT0005503 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID03413970 dme-miR-iab-8-5p miRNA MIMAT0005463 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID03490494 dme-miR-1000-5p miRNA MIMAT0005520 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID03529063 dme-miR-2c-3p miRNA MIMAT0000411 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID03718638 dme-miR-1008-3p miRNA MIMAT0005021 msl-2 mRNA 33565 Prediction 0.1828 msl-2 RAID03992016 dme-miR-1014-3p miRNA MIMAT0005027 msl-2 mRNA 33565 Prediction 0.2202