DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43749 faf auaguaaaguauacguugCAUUUAUGu |||||||| gaaaacgagacuuaauggGUAAAUACg 2 10 123 149 [dm3:3R:27615566-27615592:+] 0.4793 145 7 -10.50 -0.3408 MIMAT0000343 dme-miR-280 43749 faf auaGUAAAGUAUACGUUGCAUUUAUGu | ||| ||| || |||||| uuaCCUUUAAUAAUAAA--CAAAUACa 2 25 281 305 [dm3:3R:27615724-27615748:+] 0.5744 125 6 -6.97 -0.3567 MIMAT0005491 dme-miR-975 43749 faf uauguccuacauccUUCACAAAu |:|||||| aucaaaaccagcaaAGGUGUUUa 2 10 238 260 [dm3:3R:27615681-27615703:+] 0.5115 129 6 -9.13 -0.1206 MIMAT0005491 dme-miR-975 43749 faf uaUGUCCUA--CAU-CCU-UCACAAau | | ||| ||| | |||||| gaAGAUGAUGAGUAUCCAUAGUGUUaa 3 22 27 53 [dm3:3R:27615470-27615496:+] 0.5282 122 0 -8.35 -0.1094 MIMAT0005500 dme-miR-984 43749 faf uuuaAGGUUGGCAUA--AAUGGAGu || |||: ||| ||||||: gcuaUCGAACUUUAUAAUUACCUUu 2 20 264 288 [dm3:3R:27615707-27615731:+] 0.5925 146 0 -12.37 -0.2980 MIMAT0005509 dme-miR-991 43749 faf ugAAAGGUUUGAUG--UUGAAAUu ||| : |:|||: ||||||| ugUUUAUUAGCUAUCGAACUUUAu 2 21 255 278 [dm3:3R:27615698-27615721:+] 0.5925 159 7 -9.49 -1.0023 MIMAT0000114 dme-miR-9a 43749 faf agUAUGUCGAUCU--AUUGGUUUCu ||| |:|| | ||||||||| ccAUAGUGUUAAAUGUAACCAAAGc 2 22 42 66 [dm3:3R:27615485-27615509:+] 0.5282 164 7 -17.21 -0.6928 MIMAT0000339 dme-miR-278 43749 faf uuUGCCUGCUUUCA-GGGUGGCu || ::|::: | ||||||| uuACUAGUGGGGAUCCCCACCGu 2 21 99 121 [dm3:3R:27615542-27615564:+] 0.5282 147 7 -22.59 -0.1568 MIMAT0000352 dme-miR-79 43749 faf uacGAAACCAUUAGAUCGAAAu |||| |||| || |||| gaaCUUU-AUAAU-UACCUUUa 2 20 270 289 [dm3:3R:27615713-27615732:+] 0.5925 127 0 -6.66 -0.1751 MIMAT0000392 dme-miR-9c 43749 faf agAUGUCGAUCU-UA-UGGUUUCu || |:|| | :| ||||||| caUAGUGUUAAAUGUAACCAAAGc 2 21 43 66 [dm3:3R:27615486-27615509:+] 0.5282 150 7 -10.96 -0.6928 MIMAT0000395 dme-miR-9b 43749 faf guAUGUCGAUUU-UAGUGGUUUCu || |:|||| :| ||||||| caUAGUGUUAAAUGUAACCAAAGc 2 22 43 66 [dm3:3R:27615486-27615509:+] 0.5282 164 7 -16.45 -0.6742 MIMAT0000409 dme-miR-317 43749 faf ugaccUAUGGUGGUCGACACA-AGu || |:|: || ||||| || uguccAU-CUAUAAGGUGUGUGUCc 2 20 7 30 [dm3:3R:27613950-27613973:+] 0.5752 121 0 -15.34 -0.6880 MIMAT0005476 dme-miR-962 43749 faf cuGUCG-UAGUU--AAAGA--GAUGGAAua :||| |||:| ||| | :|||||| auUAGCUAUCGAACUUUAUAAUUACCUUua 3 24 260 289 [dm3:3R:27615703-27615732:+] 0.5925 140 0 -14.96 -0.4751 MIMAT0005477 dme-miR-963 43749 faf cuuugUUGGACUAUAAAUGGAAca |||:| ||| ||||||| uaucgAACUUUAUAAUUACCUUua 3 20 266 289 [dm3:3R:27615709-27615732:+] 0.5925 155 0 -12.06 -0.4684 MIMAT0005487 dme-miR-971 43749 faf agugacauucuucauUGUGGUu |||||| uaauaauaaacaaauACACCAa 2 8 288 309 [dm3:3R:27615731-27615752:+] 0.5744 120 6 -10.34 -0.9272 MIMAT0005512 dme-miR-993 43749 faf ucuaUGGACAUC-UCUGCUC-GAAg ||| || | | ||||| ||| ccccACC-GUCGAAAACGAGACUUa 2 20 113 136 [dm3:3R:27615556-27615579:+] 0.4793 120 0 -14.30 -0.6755 MIMAT0005016 dme-miR-1003 43749 faf gacACUUAUACAUUUAC-ACUCu ||:| : | |:||| |||| agcUGGAGGAGAAGAUGAUGAGu 2 20 17 39 [dm3:3R:27615460-27615482:+] 0.5282 123 0 -15.72 -0.7903 MIMAT0005017 dme-miR-1004 43749 faf gacACUCCCUUCACUAC-ACUCu ||: |||: |||| |||| agcUGGAGGAGAAGAUGAUGAGu 2 20 17 39 [dm3:3R:27615460-27615482:+] 0.5282 127 0 -23.55 -0.7831 MIMAT0005024 dme-miR-1011 43749 faf gacgcucgcuaaacuUGGUUAuu |||||| auaauaaacaaauacACCAAU-- 3 9 290 310 [dm3:3R:27615733-27615753:+] 0.5563 120 0 -4.43 -0.5212

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score faf RAID00113530 dme-miR-975-5p miRNA MIMAT0005491 faf mRNA 43749 Prediction 0.1828 faf RAID00129421 dme-miR-79-3p miRNA MIMAT0000352 faf mRNA 43749 Prediction 0.1828 faf RAID00161632 dme-miR-993-3p miRNA MIMAT0005512 faf mRNA 43749 Prediction 0.1828 faf RAID00350703 dme-miR-283-5p miRNA MIMAT0000347 faf mRNA 43749 Prediction 0.1828 faf RAID00540045 dme-miR-278-3p miRNA MIMAT0000339 faf mRNA 43749 Prediction 0.2202 faf RAID00575734 dme-miR-963-5p miRNA MIMAT0005477 faf mRNA 43749 Prediction 0.1828 faf RAID00629679 dme-miR-1004-3p miRNA MIMAT0005017 faf mRNA 43749 Prediction 0.1828 faf RAID00852392 dme-miR-315-5p miRNA MIMAT0000407 faf mRNA 43749 Prediction 0.1828 faf RAID00962305 dme-miR-277-3p miRNA MIMAT0000338 faf mRNA 43749 Prediction 0.1828 faf RAID00989961 dme-miR-962-5p miRNA MIMAT0005476 faf mRNA 43749 Prediction 0.1828 faf RAID01021715 dme-miR-1011-3p miRNA MIMAT0005024 faf mRNA 43749 Prediction 0.1828 faf RAID01034263 dme-miR-1003-3p miRNA MIMAT0005016 faf mRNA 43749 Prediction 0.1828 faf RAID01409825 dme-miR-961-5p miRNA MIMAT0005475 faf mRNA 43749 Prediction 0.1828 faf RAID01690327 dme-miR-9a-5p miRNA MIMAT0000114 faf mRNA 43749 Prediction 0.1828 faf RAID02277773 dme-miR-9b-5p miRNA MIMAT0000395 faf mRNA 43749 Prediction 0.1828 faf RAID03392593 dme-miR-991-3p miRNA MIMAT0005509 faf mRNA 43749 Prediction 0.1828 faf RAID03667315 dme-miR-971-3p miRNA MIMAT0005487 faf mRNA 43749 Prediction 0.2202 faf RAID03769771 dme-miR-9c-5p miRNA MIMAT0000392 faf mRNA 43749 Prediction 0.1828 faf RAID04036218 dme-miR-317-3p miRNA MIMAT0000409 faf mRNA 43749 Prediction 0.1828