DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000336 dme-miR-276* 35864 gcl gcauccuugagauaugGAGCGAc |||||| cccuaacacauuuuuaCUCGCUa 2 8 445 467 [dm3:2R:4616425-4616447:+] 0.5259 120 6 -11.19 -0.1588 MIMAT0005509 dme-miR-991 35864 gcl ugAAAGGUUUGAUGUUGA-AAUu | | |: || ::|||| ||| aaUGUACGCACAGUAACUAUUAc 2 21 468 490 [dm3:2R:4616448-4616470:+] 0.5259 120 0 -5.28 -0.7709 MIMAT0005517 dme-miR-997 35864 gcl acuuugaggaagcUCAAACcc |||||| aggcguugcaaauAGUUUGua 3 9 311 331 [dm3:2R:4616291-4616311:+] 0.5259 120 0 -6.72 -0.1454 MIMAT0005521 dme-miR-1001 35864 gcl acuAGGAACCCUCAAAUGGGu |::||| ||||||| auuUUUUUGUUCAUUUACCCg 2 19 51 71 [dm3:2R:4616031-4616051:+] 0.5679 150 7 -13.67 -0.6373 MIMAT0011791 dme-miR-2283 35864 gcl uaACAGCAUAAGUACUAUAAAAg || || | : | ||||||| aaUG-CGCAGAUCU-AUAUUUUu 2 22 195 215 [dm3:2R:4616175-4616195:+] 0.5679 141 7 -5.17 -0.8967 MIMAT0012194 dme-miR-307-as* 35864 gcl ggUAGUGUUGGAGGAACUCACu :| || |:: ||||||||| caGUAACUAUUACCUUGAGUGa 2 21 478 499 [dm3:2R:4616458-4616479:+] 0.5259 164 7 -20.47 -0.8265 MIMAT0012202 dme-miR-2494* 35864 gcl aaggguuagaccacGUGAAUg |||||| uuuauuaaagauuaCACUUAa 2 8 503 523 [dm3:2R:4616483-4616503:+] 0.5259 120 6 -9.78 -0.4010 MIMAT0012212 dme-miR-2499* 35864 gcl cguaacGCGACUGCAGAUGCGUGc |||| | | ||||||| uuuacuCGCU-AAAUGUACGCACa 2 19 457 479 [dm3:2R:4616437-4616459:+] 0.5259 152 7 -17.51 -0.9882 MIMAT0012213 dme-miR-2499 35864 gcl auGCCUGCACUUACAGUAGGCGUa || :: | || :||||||| auCGAGUAU-AAGCAUAUCCGCAa 2 23 163 185 [dm3:2R:4616143-4616165:+] 0.5679 144 7 -15.31 -0.9657 MIMAT0000114 dme-miR-9a 35864 gcl aguaugUCGAUCUAUUGGUUUcu ||| || |||||| gugcugAGC-AGUCCACCAAAcc 3 18 5 26 [dm3:2R:4615985-4616006:+] 0.6142 127 0 -9.46 -0.1710 MIMAT0012531 dme-miR-10-3p 35864 gcl uuuggagagaucuuggCUUAAAc |||||| auaguuuguaaauuugGAAUUUa 2 8 322 344 [dm3:2R:4616302-4616324:+] 0.5259 120 6 -5.19 -0.2964 MIMAT0000347 dme-miR-283 35864 gcl ucuUAAUGG---UCGACUA-UAAAu |||||| || |||| |||| acuAUUACCUUGAG-UGAUCAUUUa 2 19 483 506 [dm3:2R:4616463-4616486:+] 0.5259 123 0 -11.41 -1.0987 MIMAT0000355 dme-miR-210 35864 gcl aucGGCGA-CAGUGUGCGUGUu :|||| :::||||||| uacUCGCUAAAUGUACGCACAg 2 19 459 480 [dm3:2R:4616439-4616460:+] 0.5259 149 7 -21.77 -0.8219 MIMAT0000355 dme-miR-210 35864 gcl aucggcgacaGUGUGCGUGUu :| ||||||| uuaaauggagUAGACGCACAc 2 12 267 287 [dm3:2R:4616247-4616267:+] 0.5259 143 7 -13.70 -0.2016 MIMAT0000392 dme-miR-9c 35864 gcl agaugUCGAUCUUAUGGUUUcu ||| || |||||| ugcugAGC-AGUCCACCAAAcc 3 18 6 26 [dm3:2R:4615986-4616006:+] 0.6142 127 0 -12.03 -0.1710 MIMAT0000395 dme-miR-9b 35864 gcl guaUGU-CGAUU--UUA-GUGGUUUcu ||: |||:| |:| ||||||| -gcACGUGCUGAGCAGUCCACCAAAcc 3 21 1 26 [dm3:2R:4615981-4616006:+] 0.6142 137 0 -15.35 -0.1743 MIMAT0005469 dme-miR-956 35864 gcl uuACCUAAUCUCACCAG-AGCUUu ||| ||| || ||| ||||| uaUGGUUUA-AG-CGUCUUCGAAu 2 22 394 415 [dm3:2R:4616374-4616395:+] 0.5259 125 0 -14.28 -0.4038 MIMAT0005477 dme-miR-963 35864 gcl cuuUGUUGGACU-AUAAAUGGAACa |||: | | || |||||||| cgcACAG--UAACUA-UUACCUUGa 2 22 474 495 [dm3:2R:4616454-4616475:+] 0.5259 147 7 -12.23 -1.1700 MIMAT0005479 dme-miR-932 35864 gcl gacguuACG-UGAUGCCUUAAcu ||: | | :|||||| auaguuUGUAAAUUUGGAAUUua 3 17 322 344 [dm3:2R:4616302-4616324:+] 0.5259 127 0 -9.92 -0.2430 MIMAT0005480 dme-miR-965 35864 gcl uuccccuUUUCGAUAUGCGAAu |||| | ||| ||| auuuauuAAAGAU-UACACUUa 2 16 502 522 [dm3:2R:4616482-4616502:+] 0.5259 121 0 -8.09 -0.1094 MIMAT0005483 dme-miR-1002 35864 gcl agcGGGAAACAUAGGUGAUGAAUu | |||| :|| ||||||| ugaCGCUUUACGUCAUCUACUUAa 2 22 247 270 [dm3:2R:4616227-4616250:+] 0.5259 161 7 -19.03 -0.8588 MIMAT0005490 dme-miR-974 35864 gcl uuAUGAUGAAGAAACGAGCGAa || || |:||| |||||| ccUAACACAUUUUUACUCGCUa 2 21 446 467 [dm3:2R:4616426-4616447:+] 0.5259 140 6 -13.95 -0.1603 MIMAT0005506 dme-miR-989 35864 gcl caAGGUGAUGC-AGUGUAGUGu | :|: || |:||||||| uuUGUAUAUCGUUUACAUCACu 2 20 213 234 [dm3:2R:4616193-4616214:+] 0.5679 150 7 -14.99 -1.1625 MIMAT0005019 dme-miR-1006 35864 gcl gauacuuauucuuuagCUUAAAu |||||| auaguuuguaaauuugGAAUUUa 2 8 322 344 [dm3:2R:4616302-4616324:+] 0.5259 120 6 -5.71 -0.2964 MIMAT0005024 dme-miR-1011 35864 gcl gacgcucgcuaaacUUGGUUAUu |||||||| ugagcaguccaccaAACCAAUAc 2 10 9 31 [dm3:2R:4615989-4616011:+] 0.5910 145 7 -13.47 -1.1040 MIMAT0005027 dme-miR-1014 35864 gcl gacguuuacuuuuaCUUAAAa |||||| aguuuguaaauuugGAAUUUa 2 8 324 344 [dm3:2R:4616304-4616324:+] 0.5259 120 6 -7.97 -0.3014

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score gcl RAID00288874 dme-miR-1001-5p miRNA MIMAT0005521 gcl mRNA 35864 Prediction 0.1828 gcl RAID00346300 dme-miR-283-5p miRNA MIMAT0000347 gcl mRNA 35864 Prediction 0.1828 gcl RAID00508582 dme-miR-974-5p miRNA MIMAT0005490 gcl mRNA 35864 Prediction 0.2202 gcl RAID00565945 dme-miR-963-5p miRNA MIMAT0005477 gcl mRNA 35864 Prediction 0.2202 gcl RAID00606921 dme-miR-956-3p miRNA MIMAT0005469 gcl mRNA 35864 Prediction 0.1828 gcl RAID00958013 dme-miR-252-5p miRNA MIMAT0005516 gcl mRNA 35864 Prediction 0.1828 gcl RAID01011063 dme-miR-1011-3p miRNA MIMAT0005024 gcl mRNA 35864 Prediction 0.2202 gcl RAID01262703 dme-miR-10-3p miRNA MIMAT0012531 gcl mRNA 35864 Prediction 0.1828 gcl RAID01427930 dme-miR-965-3p miRNA MIMAT0005480 gcl mRNA 35864 Prediction 0.1828 gcl RAID01665775 dme-miR-9a-5p miRNA MIMAT0000114 gcl mRNA 35864 Prediction 0.1828 gcl RAID02255751 dme-miR-9b-5p miRNA MIMAT0000395 gcl mRNA 35864 Prediction 0.1828 gcl RAID02417881 dme-miR-932-5p miRNA MIMAT0005479 gcl mRNA 35864 Prediction 0.1828 gcl RAID02478809 dme-miR-210-3p miRNA MIMAT0000355 gcl mRNA 35864 Prediction 0.2202 gcl RAID03237403 dme-miR-972-3p miRNA MIMAT0005488 gcl mRNA 35864 Prediction 0.1828 gcl RAID03390571 dme-miR-1002-5p miRNA MIMAT0005483 gcl mRNA 35864 Prediction 0.2202 gcl RAID03469208 dme-miR-989-3p miRNA MIMAT0005506 gcl mRNA 35864 Prediction 0.2202 gcl RAID03717813 dme-miR-9c-5p miRNA MIMAT0000392 gcl mRNA 35864 Prediction 0.1828 gcl RAID03720236 dme-miR-968-5p miRNA MIMAT0005484 gcl mRNA 35864 Prediction 0.1828 gcl RAID03799963 dme-miR-1014-3p miRNA MIMAT0005027 gcl mRNA 35864 Prediction 0.2202 gcl RAID03809641 dme-miR-1006-3p miRNA MIMAT0005019 gcl mRNA 35864 Prediction 0.2202