DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 33262 dock auaGUAAAGUAUACGUUGCAUUUAUgu |:| |||| ||| |||||| cuaCGUAACAUA--AAACUUAAAUAau 3 25 1188 1212 [dm3:2L:833111-833135:+] 0.6014 141 0 -10.05 -0.1114 MIMAT0000343 dme-miR-280 33262 dock auaguaaagUAUACGUUGCAUUUAUGu | ||| ||: |||||| ccgaaacggAAAUG-AAUAAAAAUACa 2 19 1281 1306 [dm3:2L:833204-833229:+] 0.6406 124 6 -9.39 -0.4397 MIMAT0000360 dme-miR-287 33262 dock cacGUUUGCUAAAAGUUGUGu || || || | |||||| caaCACAC-AUAUGCAACACa 2 19 55 74 [dm3:2L:831978-831997:+] 0.5431 128 6 -11.94 -0.1431 MIMAT0005481 dme-miR-966 33262 dock ggUGUGUCGGGU--GUUGGGUGu |: ||| ||| |||||||| ggAUCCAGGCCACUCAACCCACa 2 20 651 673 [dm3:2L:832574-832596:+] 0.5018 162 7 -25.94 -0.1585 MIMAT0005489 dme-miR-973 33262 dock uuUUAGCUUCAAG--UUGGUG-GUUGGu :||| :| || ::|||| ||||| cuGAUCCUGGAUCCAGGCCACUCAACCc 2 24 643 670 [dm3:2L:832566-832593:+] 0.5018 126 0 -19.49 -0.1822 MIMAT0005498 dme-miR-982 33262 dock uaaaugaaguauaaaCAGGUCCu ||||||| -----------gcagGUCCAGGa 2 9 1 12 [dm3:2L:831924-831935:+] 0.4503 140 7 -16.45 -0.2123 MIMAT0005509 dme-miR-991 33262 dock ugaAAGGUUUG-AUGUUGAAAUu | | ||| || ||||| | gacUACGUAACAUAAAACUUAAa 2 20 1186 1208 [dm3:2L:833109-833131:+] 0.6014 122 0 -6.60 -0.1155 MIMAT0005510 dme-miR-992 33262 dock gaaucauGGUCU-U-UGCACAUGa |:||| | |||||||| uucaucuCUAGAUAUACGUGUACu 2 16 907 930 [dm3:2L:832830-832853:+] 0.6112 153 7 -20.59 -1.0583 MIMAT0005517 dme-miR-997 33262 dock acUUUGAGGAAGCUCAAACCc || | ||| :|||||| ucAAUAUAGUUC-GGUUUGGa 2 20 127 146 [dm3:2L:832050-832069:+] 0.5431 133 6 -12.55 -0.1035 MIMAT0005018 dme-miR-1005 33262 dock gacgcuuaaUUUCUAAGGUCu |: |||||||| guagaacgcAGCGAUUCCAGc 2 13 959 979 [dm3:2L:832882-832902:+] 0.5252 148 7 -13.46 -0.3148 MIMAT0005026 dme-miR-1013 33262 dock gcucaagccGUAUGAAAAUa ::|||||||| ggaccuuuuUGUACUUUUAu 2 12 243 262 [dm3:2L:832166-832185:+] 0.5431 147 7 -8.92 -0.9894 MIMAT0011784 dme-miR-2279* 33262 dock uuaaagUGUGU-GUCUAUAAAUu |:||| :| ||||||| caugcaAUACAUUACAUAUUUAc 2 17 379 401 [dm3:2L:832302-832324:+] 0.5431 155 7 -7.85 -0.5011 MIMAT0011784 dme-miR-2279* 33262 dock uuaAAGUGUGUGUCUAUAAAUu |||: :: ::|||||||| uagUUCG-GUUUGGAUAUUUAa 2 20 133 153 [dm3:2L:832056-832076:+] 0.5431 153 7 -10.28 -0.5596 MIMAT0011784 dme-miR-2279* 33262 dock uuaAAGUGUGUGUCUAUAA-AUu | ||::::|| ||||| || ccgUACAUGUGCACAUAUUAUAc 2 20 405 427 [dm3:2L:832328-832350:+] 0.5431 127 0 -8.93 -0.8689 MIMAT0011791 dme-miR-2283 33262 dock uaacagcauaaguacuAUAAAAg |||||| uuacaauugcgauuauUAUUUUg 2 8 1038 1060 [dm3:2L:832961-832983:+] 0.5623 120 6 -5.63 -0.1301 MIMAT0012198 dme-miR-2491 33262 dock ucGUUGACGUUU-CCGUUGU-CGc ||| | :|:| | ||||| || agCAAAUCUAGAUGUCAACAUGCa 2 21 361 384 [dm3:2L:832284-832307:+] 0.5431 123 0 -12.94 -1.0399 MIMAT0012199 dme-miR-2492 33262 dock aaacuuucgagagcUGUUUUGUa |||||||| cauaaccacgcaaaACAAAACAa 2 10 741 763 [dm3:2L:832664-832686:+] 0.5585 145 7 -8.65 -1.1313 MIMAT0012206 dme-miR-2496* 33262 dock augcuaccggagaguguGUGCGUg |||||| aucgacuacgacauaacCACGCAa 2 8 730 753 [dm3:2L:832653-832676:+] 0.5585 120 6 -14.97 -0.1971 MIMAT0012211 dme-miR-2498 33262 dock uuCAUUCUGCCCUUACGGUCAAa | |||: | |: |||||||| uaGAAAGGAGUGGCUGCCAGUUa 2 22 1106 1128 [dm3:2L:833029-833051:+] 0.5623 165 7 -18.55 -0.6979 MIMAT0012216 dme-miR-2501 33262 dock aauCGGGUCCG-UGAGGUUUGAAUg | |:| |: || : ||||||| uacGACUACGUAACAUAAAACUUAa 2 22 1183 1207 [dm3:2L:833106-833130:+] 0.6014 152 7 -12.00 -1.2887 MIMAT0000105 dme-miR-1 33262 dock gagguaugaagaaAUGUAAGgu ||||||| aaaugaauaaaaaUACAUUCaa 3 10 1290 1311 [dm3:2L:833213-833234:+] 0.6406 125 0 -7.32 -0.4863 MIMAT0000109 dme-miR-4 33262 dock aguuaccaacAGAUCGAAAUa || ||||||| acgcagcgauUCCAGCUUUAa 2 12 964 984 [dm3:2L:832887-832907:+] 0.5252 147 7 -8.82 -0.4455 MIMAT0000114 dme-miR-9a 33262 dock agUAUGUCGAUCUA-UUGGUUUcu ||||| : | || ||||||| aaAUACAUUCAAAUAAACCAAAc- 3 22 1300 1322 [dm3:2L:833223-833245:+] 0.6406 148 0 -8.50 -0.3082 MIMAT0000114 dme-miR-9a 33262 dock agUAUGUCGAUCUAUUGGU-UUCu || || | | |||||| ||| uuAUCCA-CGCGUUAACCAUAAGc 2 22 549 571 [dm3:2L:832472-832494:+] 0.5159 123 0 -11.05 -0.6534 MIMAT0012531 dme-miR-10-3p 33262 dock uuuGGAGAGAUCUUG-GCUUAAAc ::|||:| |: ||||||| gacUUUCUUUCCCAUGCGAAUUUu 2 21 1139 1162 [dm3:2L:833062-833085:+] 0.5623 151 7 -12.26 -0.8806 MIMAT0000334 dme-miR-92a 33262 dock uauccgGCCCUGUUCACGU-UAc | | ||| ||||| || uacauaCCGUACAUGUGCACAUa 2 17 399 421 [dm3:2L:832322-832344:+] 0.5431 120 0 -13.29 -1.1100 MIMAT0000347 dme-miR-283 33262 dock ucUUA-AU--GGUCGA--CUAUAAAu ||| || :|:|:| ||||||| ucAAUAUAGUUCGGUUUGGAUAUUUa 2 20 127 152 [dm3:2L:832050-832075:+] 0.5431 148 7 -11.23 -0.7773 MIMAT0000390 dme-miR-304 33262 dock gaGUGUAAAUGUUUAACUCUAAu ||: |||| ||||| |||| uuCAUUAUUAC-AAUUGCGAUUa 2 22 1031 1052 [dm3:2L:832954-832975:+] 0.5623 139 0 -14.72 -0.1080 MIMAT0000392 dme-miR-9c 33262 dock agAUGUCGAUCU-UAUGGUUUcu |||| : | | | |||||| aaUACAUUCAAAUAAACCAAAc- 3 21 1301 1322 [dm3:2L:833224-833245:+] 0.6406 135 0 -6.34 -0.3082 MIMAT0000395 dme-miR-9b 33262 dock guAUGUCGAUUUUA-GUGGUUUcu |||| :| |||| |||||| aaUACA-UUCAAAUAAACCAAAc- 3 22 1301 1322 [dm3:2L:833224-833245:+] 0.6406 142 0 -9.91 -0.3030 MIMAT0000403 dme-miR-311 33262 dock aguccgGCCACUUACACGU-UAu | || ||||||| || uacauaCCGUACAUGUGCACAUa 2 17 399 421 [dm3:2L:832322-832344:+] 0.5431 120 0 -15.42 -1.1077 MIMAT0000412 dme-miR-iab-4-5p 33262 dock aguccUAUGUA-A-GUCAUAUGCa ||| || | || |||||| aaauuAUAAAUCUACAUUAUACGa 2 18 1164 1187 [dm3:2L:833087-833110:+] 0.5623 127 6 -8.20 -0.1117 MIMAT0005467 dme-miR-190 33262 dock guugGUUCUUAUAGUUUGUA-UAGa || | ||| |||||| ||| cccgCAUUAUUAU-AAACAUAAUCu 2 21 796 819 [dm3:2L:832719-832742:+] 0.5585 126 0 -11.25 -0.7333 MIMAT0005478 dme-miR-964 33262 dock uucaAUUCGAGGGGAUAAGAUu || | |: ||||||| cacaUAUUAUACUAUAUUCUAa 2 19 416 437 [dm3:2L:832339-832360:+] 0.5431 146 7 -8.69 -1.1336 MIMAT0005480 dme-miR-965 33262 dock uuccccuuuucgauaUGCGAAu |||||| gaauuaacuaaauuaACGCUUa 2 8 269 290 [dm3:2L:832192-832213:+] 0.5431 120 6 -9.55 -0.1956 MIMAT0005493 dme-miR-977 33262 dock aaUCUGU-UGCACUUAUAGAGu | |:| || || ||||||| acAAAUACACUUG-AUAUCUCc 2 20 760 780 [dm3:2L:832683-832703:+] 0.5585 152 7 -9.46 -0.1630 MIMAT0005496 dme-miR-980 33262 dock auUCGGGAAGUGU-UCCGUCGAu || |: | :: |||||||| caAGGCUAACUUGUAGGCAGCUc 2 21 84 106 [dm3:2L:832007-832029:+] 0.5431 147 7 -18.93 -0.3820 MIMAT0005501 dme-miR-927 33262 dock ccaUUUCGCAUCCU-UAAGAUUu | | : || | ||||||| cacAUAUUAUACUAUAUUCUAAa 2 20 416 438 [dm3:2L:832339-832361:+] 0.5431 142 7 -6.16 -1.0744 MIMAT0005501 dme-miR-927 33262 dock ccauuucgcauccuuAAGAUUu |||||| ugcuauuauuuguuuUUCUAAg 2 8 1002 1023 [dm3:2L:832925-832946:+] 0.5623 120 6 -5.98 -0.1307 MIMAT0005504 dme-miR-987 33262 dock guaguuaggucugauaaAUGAAAu |||||| gccaaaggaccuuuuugUACUUUu 2 8 237 260 [dm3:2L:832160-832183:+] 0.5431 120 6 -8.75 -0.1091 MIMAT0005019 dme-miR-1006 33262 dock gauacuuauucuuUA-GCUUAAAu || ||||||| gacuuucuuucccAUGCGAAUUUu 2 11 1139 1162 [dm3:2L:833062-833085:+] 0.5623 141 7 -7.43 -0.8874 MIMAT0005020 dme-miR-1007 33262 dock acgUUUGUCAAUUAAC-UCGAAu ||:|| |:||| ||||| cuaAAGCA--AAGUUGUAGCUUc 2 20 434 454 [dm3:2L:832357-832377:+] 0.5431 120 0 -10.92 -0.4735 MIMAT0005027 dme-miR-1014 33262 dock gacguuUACUUUUACUUAAaa || || |||||| acuuuuAUAUAAUUGAAUUaa 3 16 255 275 [dm3:2L:832178-832198:+] 0.5431 131 0 -2.90 -0.1586

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G041615 dock Drosophila melanogaster 33262 14709173 876 897 R19875; DROME$DOCK_01; Binding factors: dme-miR-33-5p

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dock RAID00355319 dme-miR-9c-5p miRNA MIMAT0000392 dock mRNA 33262 Prediction 0.1828 dock RAID00432323 dme-miR-313-3p miRNA MIMAT0000405 dock mRNA 33262 Prediction 0.1828 dock RAID00526878 dme-miR-iab-4-5p miRNA MIMAT0000412 dock mRNA 33262 Prediction 0.1828 dock RAID00537751 dme-miR-966-5p miRNA MIMAT0005481 dock mRNA 33262 Prediction 0.1828 dock RAID00594286 dme-miR-4-3p miRNA MIMAT0000109 dock mRNA 33262 Prediction 0.2381 dock RAID00653369 dme-miR-10-3p miRNA MIMAT0012531 dock mRNA 33262 Prediction 0.2202 dock RAID00671488 dme-miR-980-3p miRNA MIMAT0005496 dock mRNA 33262 Prediction 0.2202 dock RAID00686920 dme-miR-283-5p miRNA MIMAT0000347 dock mRNA 33262 Prediction 0.1828 dock RAID00703305 dme-miR-997-5p miRNA MIMAT0005517 dock mRNA 33262 Prediction 0.1828 dock RAID00968090 dme-miR-965-3p miRNA MIMAT0005480 dock mRNA 33262 Prediction 0.2202 dock RAID01012051 dme-miR-927-5p miRNA MIMAT0005501 dock mRNA 33262 Prediction 0.2202 dock RAID01097509 dme-miR-9a-5p miRNA MIMAT0000114 dock mRNA 33262 Prediction 0.1828 dock RAID01134531 dme-mir-iab-4 miRNA MI0000432 dock mRNA 33262 Prediction 0.1828 dock RAID01260575 dme-miR-312-3p miRNA MIMAT0000404 dock mRNA 33262 Prediction 0.1828 dock RAID01367524 dme-miR-958-3p miRNA MIMAT0005471 dock mRNA 33262 Prediction 0.1828 dock RAID01620516 dme-miR-992-3p miRNA MIMAT0005510 dock mRNA 33262 Prediction 0.1828 dock RAID01662442 dme-miR-1-3p miRNA MIMAT0000105 dock mRNA 33262 Prediction 0.1828 dock RAID01674390 dme-miR-79-3p miRNA MIMAT0000352 dock mRNA 33262 Prediction 0.2202 dock RAID01704426 dme-miR-375-3p miRNA MIMAT0005472 dock mRNA 33262 Prediction 0.2202 dock RAID01816033 dme-miR-1017-3p miRNA MIMAT0005030 dock mRNA 33262 Prediction 0.2202 dock RAID01916661 dme-miR-304-5p miRNA MIMAT0000390 dock mRNA 33262 Prediction 0.1828 dock RAID02039869 dme-miR-1014-3p miRNA MIMAT0005027 dock mRNA 33262 Prediction 0.1828 dock RAID02125034 dme-miR-311-3p miRNA MIMAT0000403 dock mRNA 33262 Prediction 0.2202 dock RAID02178250 dme-miR-1006-3p miRNA MIMAT0005019 dock mRNA 33262 Prediction 0.2202 dock RAID02214610 dme-miR-987-5p miRNA MIMAT0005504 dock mRNA 33262 Prediction 0.1828 dock RAID02459528 dme-miR-964-5p miRNA MIMAT0005478 dock mRNA 33262 Prediction 0.2202 dock RAID02471863 dme-miR-92a-3p miRNA MIMAT0000334 dock mRNA 33262 Prediction 0.2202 dock RAID02861754 dme-miR-1013-3p miRNA MIMAT0005026 dock mRNA 33262 Prediction 0.1828 dock RAID02944486 dme-miR-310-3p miRNA MIMAT0000402 dock mRNA 33262 Prediction 0.1828 dock RAID02981138 dme-miR-977-3p miRNA MIMAT0005493 dock mRNA 33262 Prediction 0.2202 dock RAID03003820 dme-miR-1005-3p miRNA MIMAT0005018 dock mRNA 33262 Prediction 0.1828 dock RAID03016462 dme-miR-9b-5p miRNA MIMAT0000395 dock mRNA 33262 Prediction 0.1828 dock RAID03280577 dme-miR-190-5p miRNA MIMAT0005467 dock mRNA 33262 Prediction 0.1828 dock RAID03440393 dme-miR-982-5p miRNA MIMAT0005498 dock mRNA 33262 Prediction 0.1828 dock RAID03447943 dme-miR-92b-3p miRNA MIMAT0000358 dock mRNA 33262 Prediction 0.1828 dock RAID03661899 dme-miR-1007-3p miRNA MIMAT0005020 dock mRNA 33262 Prediction 0.1828