DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 33226 lwr auaGUAAA--GUAUACGUUGCAUUUAUGu ||| | ||| || || ||||||| cagCAUGUACCAUCUG-AA--UAAAUACa 2 25 179 204 [dm3:2L:541564-541589:-] 0.5307 154 7 -11.23 -1.1684 MIMAT0005489 dme-miR-973 33226 lwr uuuuAGCUUCAAGUUGGUGGUUGGu ||| :| || |::|||||| ----UCG-GGCUC--CUGCCAACCa 2 22 1 18 [dm3:2L:541750-541767:-] 0.5960 136 6 -19.09 -0.1298 MIMAT0005500 dme-miR-984 33226 lwr uuuAAGGUUGGCAUAAAUGGAGu | |||||| |||||| | uccUGCCAACCACCUUUACCACa 2 21 7 29 [dm3:2L:541739-541761:-] 0.5960 136 0 -18.67 -0.1135 MIMAT0005521 dme-miR-1001 33226 lwr acuaggaacccucAAAUGGgu |||||| ccugccaaccaccUUUACCac 3 9 8 28 [dm3:2L:541740-541760:-] 0.5960 120 0 -8.39 -0.1748 MIMAT0005018 dme-miR-1005 33226 lwr gaCGCUUAAUUUCUAAGGUcu |:| | || |||||| uaGUGCUUGAAUUAUUCCAua 3 20 465 485 [dm3:2L:541283-541303:-] 0.5278 131 0 -9.66 -0.1536 MIMAT0005025 dme-miR-1012 33226 lwr gauaccccuuuuagaaACUGAUu |||||| uauuauuuaaguaacaUGACUAu 2 8 505 527 [dm3:2L:541241-541263:-] 0.5154 120 6 -6.84 -0.1284 MIMAT0005026 dme-miR-1013 33226 lwr gcucaAGCCGUAUGAAAAUa || | |||||||| ccacgUCUACUUACUUUUAa 2 16 84 103 [dm3:2L:541665-541684:-] 0.5557 151 7 -7.87 -1.0991 MIMAT0011784 dme-miR-2279* 33226 lwr uuaaagugugugucuAUAAAUu |||||| cuuccuuuugcuuauUAUUUAa 2 8 493 514 [dm3:2L:541254-541275:-] 0.5172 120 6 -2.70 -0.1511 MIMAT0011791 dme-miR-2283 33226 lwr uaacagCAUAAGUACU-AUAAAAg ||| ||||| |||||| auuuaaGUA-ACAUGACUAUUUUu 2 18 509 531 [dm3:2L:541237-541259:-] 0.5154 127 6 -9.56 -0.8212 MIMAT0012197 dme-miR-2490 33226 lwr aacGUUG-GACGAAAUAG-CGAAGu |:|| || |||| || ||||| auuCGACGCU-CUUU-UCAGCUUCc 2 21 258 280 [dm3:2L:541488-541510:-] 0.5385 123 0 -15.83 -0.5332 MIMAT0012205 dme-miR-2495* 33226 lwr ccgcccGUAAAGUUAA--UCCACGGc |||| ::: | ||||||| agcuucCAUUCUGGGUGCAGGUGCCg 2 19 274 299 [dm3:2L:541469-541494:-] 0.5385 149 7 -21.58 -0.2089 MIMAT0012208 dme-miR-2497* 33226 lwr uuguugauguaaaacguuACGAAUg |||||| auauaaaguucuuccuuuUGCUUAu 2 8 483 507 [dm3:2L:541261-541285:-] 0.5172 120 6 -6.78 -0.1203 MIMAT0000110 dme-miR-5 33226 lwr guauaGUGUUGCUAGCAAGGAAa :|:|| | |: |||||| uuccaUAUAAAG-UUCUUCCUUu 2 19 479 500 [dm3:2L:541268-541289:-] 0.5172 124 6 -11.95 -0.1356 MIMAT0000112 dme-miR-7 33226 lwr uguuguuuuagugaucAGAAGGu |||||| uuauuccauauaaaguUCUUCCu 2 8 476 498 [dm3:2L:541270-541292:-] 0.5278 120 6 -9.79 -0.1101 MIMAT0000338 dme-miR-277 33226 lwr acAGCAUGGUCUAUCACGUAAAu |:||| || | ||||||| agUUGUAAAAGCUUAUGCAUUUu 2 22 370 392 [dm3:2L:541376-541398:-] 0.5385 161 7 -16.61 -1.0472 MIMAT0000347 dme-miR-283 33226 lwr ucUUAAUGGUCGACU-AUAAAu || || || ||| ||||| uuAAGUAACA--UGACUAUUUu 2 20 511 530 [dm3:2L:541238-541257:-] 0.5154 120 0 -4.40 -0.6288 MIMAT0000362 dme-miR-263b 33226 lwr cacuuaagagggucACGGUUc |||||| -----ucgggcuccUGCCAAc 2 8 1 16 [dm3:2L:541752-541767:-] 0.5960 120 6 -12.77 -0.1222 MIMAT0005463 dme-miR-iab-4as-5p 33226 lwr gccAUAUGGAAGUCAU-AUGCAUu |:||:| |||| |||||| uuuUGUAUCGCGAGUACUACGUAc 2 21 316 339 [dm3:2L:541429-541452:-] 0.5385 132 6 -14.58 -0.7824 MIMAT0005478 dme-miR-964 33226 lwr uuCAAUUCGAGGG--GAUAAGAUu || || | || :||||||| ggGUGCAGGUGCCGAUUAUUCUAc 2 21 286 309 [dm3:2L:541459-541482:-] 0.5385 151 7 -12.96 -0.1989 MIMAT0005483 dme-miR-1002 33226 lwr agcgggaaAC-AUAGGU---GAUGAAUu || | |||| ||||||| guuuggaaUGCUCUCCACGUCUACUUAc 2 17 70 97 [dm3:2L:541671-541698:-] 0.5557 146 7 -15.40 -0.8856 MIMAT0005486 dme-miR-970 33226 lwr uaucggcgcacacaGAAUACu |||||| auuaguuguaaaagCUUAUGc 2 8 367 387 [dm3:2L:541381-541401:-] 0.5385 120 6 -11.84 -0.1207 MIMAT0005504 dme-miR-987 33226 lwr guaguuAGGU-CUGAUAAAUGAAAu |||| | ||| ||||||| augcucUCCACGUCUACUUACUUUu 2 19 77 101 [dm3:2L:541667-541691:-] 0.5557 165 7 -14.59 -0.6689

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score lwr RAID00422295 dme-miR-iab-8-5p miRNA MIMAT0005463 lwr mRNA 33226 Prediction 0.1828 lwr RAID00692096 dme-miR-997-5p miRNA MIMAT0005517 lwr mRNA 33226 Prediction 0.1828 lwr RAID00855478 dme-miR-305-5p miRNA MIMAT0000391 lwr mRNA 33226 Prediction 0.1828 lwr RAID01077691 dme-miR-954-5p miRNA MIMAT0005465 lwr mRNA 33226 Prediction 0.1828 lwr RAID01153138 dme-miR-263b-5p miRNA MIMAT0000362 lwr mRNA 33226 Prediction 0.1828 lwr RAID01489214 dme-miR-973-5p miRNA MIMAT0005489 lwr mRNA 33226 Prediction 0.1828 lwr RAID02042127 dme-miR-1002-5p miRNA MIMAT0005483 lwr mRNA 33226 Prediction 0.2202 lwr RAID02394121 dme-miR-968-5p miRNA MIMAT0005484 lwr mRNA 33226 Prediction 0.1828 lwr RAID02719296 dme-miR-970-3p miRNA MIMAT0005486 lwr mRNA 33226 Prediction 0.1828 lwr RAID02853243 dme-miR-964-5p miRNA MIMAT0005478 lwr mRNA 33226 Prediction 0.2202 lwr RAID02890090 dme-miR-1013-3p miRNA MIMAT0005026 lwr mRNA 33226 Prediction 0.1828 lwr RAID02961718 dme-miR-987-5p miRNA MIMAT0005504 lwr mRNA 33226 Prediction 0.2202 lwr RAID03063048 dme-miR-283-5p miRNA MIMAT0000347 lwr mRNA 33226 Prediction 0.1828 lwr RAID03189228 dme-miR-7-5p miRNA MIMAT0000112 lwr mRNA 33226 Prediction 0.1828 lwr RAID03632718 dme-miR-277-3p miRNA MIMAT0000338 lwr mRNA 33226 Prediction 0.2202 lwr RAID04063631 dme-miR-5-5p miRNA MIMAT0000110 lwr mRNA 33226 Prediction 0.1828 lwr RAID04064489 dme-miR-303-5p miRNA MIMAT0000388 lwr mRNA 33226 Prediction 0.1828