DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 47260 l(3)05822 ucaGCGUCCGAGGUGAAUUUAUAAAu ||:: :||:|:| |||:||| guaCGUGAUUUCUAUU--AAUGUUUa 2 24 427 450 [dm3:3R:14114851-14114874:-] 0.5379 140 0 -13.86 -0.1050 MIMAT0000364 dme-miR-289 47260 l(3)05822 ucaGCGUCCGAG-GUGAAU-UUAUAAau | || | | :|: || |||||| auaCACACACACAUAUAUAUAAUAUUau 3 24 91 118 [dm3:3R:14115183-14115210:-] 0.5379 129 0 -3.84 -0.2472 MIMAT0005464 dme-miR-iab-4as-3p 47260 l(3)05822 auuuGCAUAUGACUUACAUAGg :|| || || ||||||: cguuUGUUUA-UGUAUGUAUUa 2 19 520 540 [dm3:3R:14114761-14114781:-] 0.5379 140 0 -8.63 -0.1485 MIMAT0005464 dme-miR-iab-4as-3p 47260 l(3)05822 auuugcAUAUGACUUACAUAGg |||| | ||||||: uaauucUAUA-UAUAUGUAUUa 2 17 315 335 [dm3:3R:14114966-14114986:-] 0.5379 134 0 -6.83 -0.1513 MIMAT0005475 dme-miR-961 47260 l(3)05822 uagagucaaugaCCACUAGUuu | |||||| gaaauaaaugaaGAUGAUCAca 3 11 693 714 [dm3:3R:14114587-14114608:-] 0.5495 122 0 -5.33 -0.1196 MIMAT0005488 dme-miR-972 47260 l(3)05822 cggauuuauaagcAUAACAUGu |||||||: agcaggcaaaaaaUAUUGUAUa 2 10 394 415 [dm3:3R:14114886-14114907:-] 0.5379 129 0 -8.33 -0.1431 MIMAT0005499 dme-miR-983 47260 l(3)05822 aguAAUCAAGCUUUGCAUAAUa ||: || : |:|||||| cguUUGUUUAUGUAUGUAUUAa 2 20 520 541 [dm3:3R:14114760-14114781:-] 0.5379 139 6 -10.40 -0.1940 MIMAT0005499 dme-miR-983 47260 l(3)05822 agUAAUCAAGCUUUGCAUAAUa ||| | | |:|||||| uaAUUCUAUAUAUAUGUAUUAg 2 21 315 336 [dm3:3R:14114965-14114986:-] 0.5379 136 6 -6.02 -0.1836 MIMAT0011784 dme-miR-2279* 47260 l(3)05822 uuAAAGUGUGUGUCUAUAAAUu |||| :|: :| ||:|||| gaUUUC-UAU-UA-AUGUUUAa 2 21 433 451 [dm3:3R:14114850-14114868:-] 0.5379 130 0 -7.82 -0.1235 MIMAT0011785 dme-miR-2279 47260 l(3)05822 uuuaUUUAUAGAAGCG-CACUUu ::||||| | || ||||| aucaGGAUAUCCUAGCAGUGAAg 2 19 660 682 [dm3:3R:14114619-14114641:-] 0.5495 130 0 -14.83 -0.7806 MIMAT0011789 dme-miR-2281 47260 l(3)05822 cgUUAUGACGUCU--AUGUCUAu |:| ||| | ||||||| uuAGUUAGGCACAUUUACAGAUu 2 20 479 501 [dm3:3R:14114800-14114822:-] 0.5379 146 7 -12.26 -0.7839 MIMAT0012196 dme-miR-2489 47260 l(3)05822 ugacGUUUAUGU-UGUAUGUUAu || | ||| |:|||:||| uacaCACACACAUAUAUAUAAUa 2 19 92 114 [dm3:3R:14115187-14115209:-] 0.5379 145 0 -10.28 -0.1177 MIMAT0012201 dme-miR-2493 47260 l(3)05822 ugcggAGCGUGUUUAUGUGUGcc || :|:| | |||||| cugaaUCAUAUACACACACACau 3 19 82 104 [dm3:3R:14115197-14115219:-] 0.5379 138 0 -12.29 -0.1296 MIMAT0012208 dme-miR-2497* 47260 l(3)05822 uuGUUGAUGUAAAACGUUACGAAUg :||: |: ||| |||||||| auUAAUAAUUCUUUCAAAUGCUUAg 2 24 537 561 [dm3:3R:14114740-14114764:-] 0.5111 163 7 -11.86 -0.6434 MIMAT0012208 dme-miR-2497* 47260 l(3)05822 uuguUGAUGUAAA-A-CGUUACGAAUg || |||| | :||||:||| auguACGUGAUUUCUAUUAAUGUUUAa 2 22 425 451 [dm3:3R:14114850-14114876:-] 0.5379 135 0 -9.90 -0.1159 MIMAT0012209 dme-miR-2497 47260 l(3)05822 gaCGUUUGUAACAUUUACAAca |::| : | | |||||| acGUGAUUUCUAUUAAUGUUua 3 21 429 450 [dm3:3R:14114851-14114872:-] 0.5379 128 0 -4.37 -0.3445 MIMAT0012215 dme-miR-2500 47260 l(3)05822 gacuccaggugugugUUUUAGg |||||| augaagaugaucacaAAAAUCa 2 8 700 721 [dm3:3R:14114580-14114601:-] 0.5495 120 6 -11.21 -0.1693 MIMAT0000332 dme-miR-274 47260 l(3)05822 uaaugggcaaucaCAGCCAGUGUUUu | :| ||||||| cgaaauaaaugaaGAUGAUCACAAAa 2 14 692 717 [dm3:3R:14114584-14114609:-] 0.5495 145 7 -11.69 -1.2213 MIMAT0000396 dme-let-7 47260 l(3)05822 ugauAUGUUGGAUGAUG-GAGu |:||: |:|||| ||| cccuUGCAGAGUGCUACUCUCa 2 18 606 627 [dm3:3R:14114674-14114695:-] 0.5022 121 0 -18.55 -0.5030 MIMAT0000413 dme-miR-iab-4-3p 47260 l(3)05822 caaUGC-AUAUGACUUCCAUAUGGc ||| | ||: | ||||||| uuaACGAUCUAUAAAUUGUAUACCc 2 22 21 45 [dm3:3R:14115256-14115280:-] 0.5912 152 7 -11.03 -1.0076 MIMAT0005467 dme-miR-190 47260 l(3)05822 guUGGU-UCU-UAUAGUUUGUAUAga |:|| | | | | || |||||| gaAUCAUAUACACA-CACACAUAUau 3 23 84 108 [dm3:3R:14115193-14115217:-] 0.5379 130 0 -8.67 -0.1015 MIMAT0005478 dme-miR-964 47260 l(3)05822 uucAAUUCGAG-GGGAUAAGAuu ||| :|: |: |||||| auaUUAUUUUUACUAUAUUCUuu 3 20 112 134 [dm3:3R:14115167-14115189:-] 0.5379 130 0 -5.95 -0.1006 MIMAT0005478 dme-miR-964 47260 l(3)05822 uuCAAUUCGAGGGGAUAAGAUu ||||| || : |||||| uaGUUAA-CUAAAUAAUUCUAu 2 21 303 323 [dm3:3R:14114978-14114998:-] 0.5379 126 6 -10.42 -0.1556 MIMAT0005486 dme-miR-970 47260 l(3)05822 uaucggcgcacacAGAAUACu ||||||| ucuuuucgaaaaaUCUUAUGa 2 9 130 150 [dm3:3R:14115151-14115171:-] 0.5379 140 7 -12.08 -1.2302 MIMAT0005501 dme-miR-927 47260 l(3)05822 ccAUUUCGCAUCCUUAAGAUuu | || | | ||||||| agUUAA-CUAAAUAAUUCUAua 3 21 304 324 [dm3:3R:14114977-14114997:-] 0.5379 126 0 -4.17 -0.2284 MIMAT0005519 dme-miR-999 47260 l(3)05822 ucugUGUCAGAAUGUCAAUUGu | | | || :||||||| aaugAAACUGUU-UAGUUAACu 2 19 291 311 [dm3:3R:14114990-14115010:-] 0.5379 148 7 -10.59 -1.2026 MIMAT0005519 dme-miR-999 47260 l(3)05822 ucUGUGUCAGA-AUGUCAAUUgu |:|: || | || |||||| aaAUAUUGUAUAUA-AGUUAAaa 3 21 404 425 [dm3:3R:14114876-14114897:-] 0.5379 133 0 -7.20 -0.1441 MIMAT0005016 dme-miR-1003 47260 l(3)05822 gacACUUAUACAUUUACA-CUCu | |: : |||:|||| ||| cgaUAAGCGAGUAGAUGUCGAGc 2 20 56 78 [dm3:3R:14115223-14115245:-] 0.5379 123 0 -13.07 -0.6025 MIMAT0005017 dme-miR-1004 47260 l(3)05822 gacACUCCCUUCACUACA-CUCu | || ||: ||||| ||| cgaUAAGCGAGUAGAUGUCGAGc 2 20 56 78 [dm3:3R:14115223-14115245:-] 0.5379 123 0 -11.96 -0.5951

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score l(3)05822 RAID00286065 dme-miR-927-5p miRNA MIMAT0005501 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID00454215 dme-miR-985-3p miRNA MIMAT0005502 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID00475282 dme-miR-999-3p miRNA MIMAT0005519 l(3)05822 mRNA 47260 Prediction 0.2202 l(3)05822 RAID00914141 dme-miR-994-5p miRNA MIMAT0005513 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID01266355 dme-miR-284-3p miRNA MIMAT0000348 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID01295264 dme-miR-iab-4-3p miRNA MIMAT0000413 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID01401320 dme-miR-274-5p miRNA MIMAT0000332 l(3)05822 mRNA 47260 Prediction 0.2202 l(3)05822 RAID01444429 dme-miR-1003-3p miRNA MIMAT0005016 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID01759670 dme-miR-970-3p miRNA MIMAT0005486 l(3)05822 mRNA 47260 Prediction 0.2202 l(3)05822 RAID02552110 dme-miR-964-5p miRNA MIMAT0005478 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID02931379 dme-miR-263a-5p miRNA MIMAT0000319 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID03159535 dme-miR-190-5p miRNA MIMAT0005467 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID03280596 dme-let-7-5p miRNA MIMAT0000396 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID03540575 dme-mir-iab-4 miRNA MI0000432 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID03659422 dme-miR-965-3p miRNA MIMAT0005480 l(3)05822 mRNA 47260 Prediction 0.1828 l(3)05822 RAID04024239 dme-miR-1004-3p miRNA MIMAT0005017 l(3)05822 mRNA 47260 Prediction 0.1828