DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 46194 Spn gccccgcucucuuACUAUUCc ||||||| -uugaauucuaguUGAUAAGc 2 9 1 20 [dm3:3L:2508287-2508306:-] 0.6580 140 7 -6.81 -1.1444 MIMAT0000330 dme-miR-184* 46194 Spn gcccCGCUCUCUUACUAUUcc || | : |||||||| auauGC-AUGUAAUGAUAAua 3 18 149 168 [dm3:3L:2508139-2508158:-] 0.5509 131 0 -5.86 -0.5390 MIMAT0000364 dme-miR-289 46194 Spn ucagcguccgAGGUGAAUUUAUAAAu |:|: ||| |||||| cauauaucuaUUCGGUUAUAUAUUUa 2 17 124 149 [dm3:3L:2508158-2508183:-] 0.5509 132 6 -10.23 -0.2672 MIMAT0005488 dme-miR-972 46194 Spn cggAUU-UAUAAGCAUAACAUGu ||| ||| |: |||||| ugaUAAUAUAAUUUAUUUGUACa 2 20 161 183 [dm3:3L:2508124-2508146:-] 0.5509 126 6 -8.17 -0.4333 MIMAT0010206 dme-miR-995* 46194 Spn gcgucgaggguguauUAAGCCc |||||| uauaaacauauaucuAUUCGGu 2 8 118 139 [dm3:3L:2508168-2508189:-] 0.5509 120 6 -12.25 -0.1968 MIMAT0011784 dme-miR-2279* 46194 Spn uuaAAGUGUGUGUCUAUAAAUu |||: :|: ||||||| cuaUUCGGUUAU--AUAUUUAu 2 20 131 150 [dm3:3L:2508157-2508176:-] 0.5509 144 7 -5.78 -1.1654 MIMAT0011784 dme-miR-2279* 46194 Spn uuaaaGUGUGUGUC---UAUAA-AUu ||:||:||| ||||| || aaaagCAUACGCAGUAUAUAUUGUAg 2 18 40 65 [dm3:3L:2508242-2508267:-] 0.5509 124 0 -15.73 -0.9569 MIMAT0011791 dme-miR-2283 46194 Spn uaACAGCAUAAGUACUAUAAAAg ||| |: | || ||| ||| caUGUAAUGAUAAU-AUAAUUUa 2 22 154 175 [dm3:3L:2508132-2508153:-] 0.5509 123 0 -4.99 -0.1113 MIMAT0012206 dme-miR-2496* 46194 Spn augcuaccggagagUGUGUGCGUg | ||||||: aacacacacaaggaAAACACGCGc 2 11 89 112 [dm3:3L:2508195-2508218:-] 0.5509 126 0 -16.73 -0.1326 MIMAT0000347 dme-miR-283 46194 Spn ucuuaauggucgacUAUAAAu |||||| aucuauucgguuauAUAUUUa 2 8 129 149 [dm3:3L:2508158-2508178:-] 0.5509 120 6 -8.40 -0.2672 MIMAT0000391 dme-miR-305 46194 Spn gucucguggacuacuuCAUGUUa |||||| auaauauaauuuauuuGUACAAc 2 8 163 185 [dm3:3L:2508122-2508144:-] 0.5509 120 6 -7.06 -0.3058 MIMAT0005478 dme-miR-964 46194 Spn uucaauucgaggggaUAAGAUu |||||| -----------uugaAUUCUAg 2 8 1 11 [dm3:3L:2508296-2508306:-] 0.6580 120 6 -5.63 -0.1201 MIMAT0005501 dme-miR-927 46194 Spn ccauuucgcaucCUUAAGAUUu ||||||||: ----------uuGAAUUCUAGu 2 11 1 12 [dm3:3L:2508295-2508306:-] 0.6580 134 0 -8.99 -0.1137 MIMAT0005520 dme-miR-1000 46194 Spn ugACG-ACACUGUCCUGUUAUa ||| ||| |: ||:|||| uaUGCAUGUAAU--GAUAAUAu 2 20 150 169 [dm3:3L:2508138-2508157:-] 0.5509 135 0 -10.29 -0.1345

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Spn RAID00104225 dme-miR-996-3p miRNA MIMAT0005515 Spn mRNA 46194 Prediction 0.1828 Spn RAID00420980 dme-miR-972-3p miRNA MIMAT0005488 Spn mRNA 46194 Prediction 0.1828 Spn RAID00554273 dme-miR-927-5p miRNA MIMAT0005501 Spn mRNA 46194 Prediction 0.1828 Spn RAID01393364 dme-miR-964-5p miRNA MIMAT0005478 Spn mRNA 46194 Prediction 0.1828 Spn RAID01581982 dme-bantam-3p miRNA MIMAT0000365 Spn mRNA 46194 Prediction 0.1828 Spn RAID01590093 dme-miR-283-5p miRNA MIMAT0000347 Spn mRNA 46194 Prediction 0.1828 Spn RAID01977294 dme-miR-1000-5p miRNA MIMAT0005520 Spn mRNA 46194 Prediction 0.1828 Spn RAID02278778 dme-miR-286-3p miRNA MIMAT0000359 Spn mRNA 46194 Prediction 0.1828 Spn RAID02544548 dme-miR-1-3p miRNA MIMAT0000105 Spn mRNA 46194 Prediction 0.1828 Spn RAID03035790 dme-miR-279-3p miRNA MIMAT0000341 Spn mRNA 46194 Prediction 0.1828 Spn RAID03461652 dme-miR-305-5p miRNA MIMAT0000391 Spn mRNA 46194 Prediction 0.1828