DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 41785 eff auaguaaaGUAUACGUUGCAUUUAUGu |||| |:: ||||||| agcaucaaCAUAAUAAGUUUAAAUACa 2 20 664 690 [dm3:3R:10558527-10558553:-] 0.5571 155 7 -12.21 -1.2999 MIMAT0000360 dme-miR-287 41785 eff cacguUUGCUAAAAGUUGUGu |:| | |||||||: gaaucAGC-AAAUUCAACAUc 2 17 28 47 [dm3:3R:10559170-10559189:-] 0.7160 130 0 -10.80 -0.1752 MIMAT0000360 dme-miR-287 41785 eff cacguUUGCUAAAAGUUGUGu ||| | ||||||: ccaacAAC-AGCAUCAACAUa 2 17 656 675 [dm3:3R:10558542-10558561:-] 0.5571 126 0 -9.37 -0.1766 MIMAT0000364 dme-miR-289 41785 eff ucagcguccgaggugaauuUAUAAAu |||||| uuauuauuauuauuauauuAUAUUUa 2 8 733 758 [dm3:3R:10558459-10558484:-] 0.6307 120 6 -6.30 -0.6079 MIMAT0005502 dme-miR-985 41785 eff acgggcUGGUAACCUUGUAAac | |||| |||||| gauguaAGCAUU-AAACAUUaa 3 17 621 641 [dm3:3R:10558576-10558596:-] 0.5571 130 0 -6.53 -0.1088 MIMAT0005509 dme-miR-991 41785 eff ugaaAGGUUUGAUGUUGAAAUu || | |: |:|| |||| agcaUCAACAUAAUAAGUUUAa 2 19 664 685 [dm3:3R:10558532-10558553:-] 0.5571 126 0 -6.74 -0.1320 MIMAT0011784 dme-miR-2279* 41785 eff uuAAAGUGUGUGU-CUAUAAAUu | |:|: :|:| ||||||| auUAUUAU-UAUAUUAUAUUUAa 2 21 738 759 [dm3:3R:10558458-10558479:-] 0.6307 145 7 -6.52 -1.3364 MIMAT0011784 dme-miR-2279* 41785 eff uuaaaGUGUGUGUC--UA-UAAAUu ||:| ||:| || ||||| aacagCAUAAACGGAAAUAAUUUAa 2 18 577 601 [dm3:3R:10558616-10558640:-] 0.5571 120 0 -11.01 -1.2729 MIMAT0011791 dme-miR-2283 41785 eff uaacagcAUAA-GUACUAUAAAag |||| :|| |||||| uuauuauUAUUAUAUUAUAUUUaa 3 17 736 759 [dm3:3R:10558458-10558481:-] 0.6307 139 0 -2.10 -0.3980 MIMAT0012196 dme-miR-2489 41785 eff ugacGUUUAUGUUGUAUGUUau :||:| :|| |||||| auaaUAAGUUUAA-AUACAAag 3 19 673 693 [dm3:3R:10558524-10558544:-] 0.5571 136 0 -6.66 -0.2056 MIMAT0012196 dme-miR-2489 41785 eff ugaCGUUUAUGUUGUA--UGUUAu |||||| |||||| ||||| ucaGCAAAUUCAACAUCAACAAUa 2 20 31 54 [dm3:3R:10559163-10559186:-] 0.7160 135 0 -18.56 -1.2016 MIMAT0012196 dme-miR-2489 41785 eff ugacgUUUAUG-UUGUAUGUUAu || |:| || || |||| auaaaAAUUGCAAAAAUUCAAUu 2 18 772 794 [dm3:3R:10558423-10558445:-] 0.7043 124 0 -8.73 -0.1603 MIMAT0012198 dme-miR-2491 41785 eff ucGUUGACGUU-UC--CGUUGUCGc ||:|||||: || ||||||| agCAGCUGCAGCAGCAACAACAGCa 2 21 286 310 [dm3:3R:10558907-10558931:-] 0.5571 162 7 -27.23 -0.9770 MIMAT0012198 dme-miR-2491 41785 eff ucGUUGACGUUUCCGUUGUCGc ||:|| | || ||||||| gaCAGCUACCAA--CAACAGCa 2 21 648 667 [dm3:3R:10558550-10558569:-] 0.5571 157 7 -15.52 -1.1291 MIMAT0012198 dme-miR-2491 41785 eff ucGUUGACGUUUCCGUUGUCGc ||: ||||| ||||||: agCAGAUGCAACAACAACAGUa 2 21 66 87 [dm3:3R:10559130-10559151:-] 0.5769 148 0 -19.13 -0.1184 MIMAT0012198 dme-miR-2491 41785 eff ucgUUGACGUU-UC-CGUUGUCgc :|:||||: || |||||| ccaGAUUGCAGCAGUCCAACAGaa 3 20 7 30 [dm3:3R:10559187-10559210:-] 0.8354 137 0 -17.15 -0.2045 MIMAT0012198 dme-miR-2491 41785 eff ucgUUGACGUUUCCGUUGUCGc ||| | ||| |||||| ccgAACAG-AAACAGAACAGCa 2 20 563 583 [dm3:3R:10558634-10558654:-] 0.5571 125 6 -10.20 -0.2070 MIMAT0012199 dme-miR-2492 41785 eff aaacuuucgagagcUGUUUUGua ||||||| aaauacaaagaaaaACAAAACua 3 10 684 706 [dm3:3R:10558511-10558533:-] 0.5571 125 0 -7.21 -0.3471 MIMAT0012199 dme-miR-2492 41785 eff aaACUUUCG--AGAGCUGUU-UUGUa | ||||| : | |||| |||| agUAAAAGCAGAUGCAACAACAACAg 2 22 60 85 [dm3:3R:10559132-10559157:-] 0.5769 120 0 -8.05 -0.9423 MIMAT0012215 dme-miR-2500 41785 eff gacuccaGGUGUGU-GUUUUAGg |:||| | |||||| aacaaaaCUACAAAUAAAAAUCa 2 16 697 719 [dm3:3R:10558498-10558520:-] 0.5571 122 6 -11.79 -0.2150 MIMAT0000319 dme-miR-263a 41785 eff cacuuaagaaggucacgGUAAUUg |||||| ugaaaaaaugauguaagCAUUAAa 2 8 612 635 [dm3:3R:10558582-10558605:-] 0.5571 120 6 -4.86 -0.1357 MIMAT0000319 dme-miR-263a 41785 eff cacuuaagaaggucacgGUAAUUg |||||| augauguaagcauuaaaCAUUAAa 2 8 619 642 [dm3:3R:10558575-10558598:-] 0.5571 120 6 -7.08 -0.1198 MIMAT0000347 dme-miR-283 41785 eff ucuUAAUGGUCGACUAUAAAu ||||::| | |||||| auuAUUAUUAUAUUAUAUUUa 2 19 738 758 [dm3:3R:10558459-10558479:-] 0.6307 134 6 -6.70 -0.5932 MIMAT0000350 dme-miR-34 41785 eff guGUUGGUCGAU-UGG-UGUGA-CGGu ||| || | | ||| ||||| ||| aaCAAACA-CAACACCAACACUCGCCa 2 23 241 266 [dm3:3R:10558951-10558976:-] 0.5571 126 0 -23.83 -0.5408 MIMAT0005467 dme-miR-190 41785 eff guugGUUCUUAUAGUUUG-UAUAGa ||| |||| | || ||||| uccaCAACAAUAGC-CACAAUAUCa 2 21 188 211 [dm3:3R:10559006-10559029:-] 0.5571 126 0 -11.21 -0.3270 MIMAT0005487 dme-miR-971 41785 eff agUGACAUUCUU--CAUUGUGGUu :| | || || ||||||| uaGCAGCAACAAACACAACACCAa 2 21 234 257 [dm3:3R:10558960-10558983:-] 0.5571 143 7 -11.55 -0.6683 MIMAT0005506 dme-miR-989 41785 eff caAGGUGAUGCAG-UGUAGUgu || :| | || |||||| aaUCAGCAAAUUCAACAUCAac 3 20 29 50 [dm3:3R:10559167-10559188:-] 0.7160 130 0 -8.45 -0.1515 MIMAT0005506 dme-miR-989 41785 eff caAGGUGAUGCAGUGUAGUgu |:|| |: | |||||| aaUUCA--AUUUAACAUCAag 3 20 786 804 [dm3:3R:10558413-10558431:-] 0.7043 128 0 -9.13 -0.3593 MIMAT0005507 dme-miR-137 41785 eff gaugcacauaagagUUCGUUau |||||| aacaacaacaguaaAAGCAAca 3 9 75 96 [dm3:3R:10559121-10559142:-] 0.5571 120 0 -5.05 -0.1851

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score eff RAID00110810 dme-miR-190-5p miRNA MIMAT0005467 eff mRNA 41785 Prediction 0.1828 eff RAID00174342 dme-miR-283-5p miRNA MIMAT0000347 eff mRNA 41785 Prediction 0.1828 eff RAID00903495 dme-miR-1008-3p miRNA MIMAT0005021 eff mRNA 41785 Prediction 0.1828 eff RAID01732737 dme-miR-34-5p miRNA MIMAT0000350 eff mRNA 41785 Prediction 0.1828 eff RAID02254394 dme-miR-137-3p miRNA MIMAT0005507 eff mRNA 41785 Prediction 0.1828 eff RAID03279999 dme-miR-989-3p miRNA MIMAT0005506 eff mRNA 41785 Prediction 0.1828 eff RAID03472071 dme-miR-971-3p miRNA MIMAT0005487 eff mRNA 41785 Prediction 0.2202 eff RAID03793820 dme-miR-263a-5p miRNA MIMAT0000319 eff mRNA 41785 Prediction 0.1828 eff RAID04040951 dme-miR-1005-3p miRNA MIMAT0005018 eff mRNA 41785 Prediction 0.1828