DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 46243 poe cacgUUUGCUAAAAGUUGUGu || : || ||:||||| cauaAAUUUAUAUUUAACACa 2 18 73 93 [dm3:2L:8054418-8054438:-] 0.5461 141 0 -10.39 -0.1023 MIMAT0000364 dme-miR-289 46243 poe ucagcguccGAGGUGAAUUUAUAAAu | | | |||| |||| uauauuuaaCACAUCCUAAACAUUUa 2 18 81 106 [dm3:2L:8054405-8054430:-] 0.5461 121 0 -6.09 -0.1291 MIMAT0000364 dme-miR-289 46243 poe ucagcguccgaggugaauuUAUAAAu |||||| aaacauacagcauaaauuuAUAUUUa 2 8 63 88 [dm3:2L:8054423-8054448:-] 0.5461 120 6 -7.93 -0.3206 MIMAT0005502 dme-miR-985 46243 poe acgggcugguaaccUUGUAAAc ||||||| uuuaacacauccuaAACAUUUa 2 9 85 106 [dm3:2L:8054405-8054426:-] 0.5461 140 7 -5.72 -1.3042 MIMAT0005509 dme-miR-991 46243 poe ugaaagGUUUGAUG--UUGAAAUu :|||:|:| ||||||| accaaaUAAAUUGCAGAACUUUAa 2 17 20 43 [dm3:2L:8054468-8054491:-] 0.5461 155 7 -13.32 -0.7839 MIMAT0011784 dme-miR-2279* 46243 poe uuaaaGUGUGUGUCUAUAAAUu ||:| |: ||||||| uacagCAUAAAUUUAUAUUUAa 2 18 68 89 [dm3:2L:8054422-8054443:-] 0.5461 153 7 -9.08 -1.2968 MIMAT0011791 dme-miR-2283 46243 poe uaacagCAUAAGU-ACUAUAAAag | || | | |||||| cauacaGCAUAAAUUUAUAUUUaa 3 18 66 89 [dm3:2L:8054422-8054445:-] 0.5461 124 0 -1.01 -0.2204 MIMAT0012203 dme-miR-2494 46243 poe gaaCAUUCACCU--GUAA--UGACCCUu ||: || | :||| :|||||| gaaGUGCUUGUAUUUAUUGAGCUGGGAa 2 22 140 167 [dm3:2L:8054344-8054371:-] 0.4718 131 6 -20.26 -0.2425 MIMAT0000114 dme-miR-9a 46243 poe agUAUGU---CGAU--CUAUUGGUUUcu ||:|| |||: |||||||| -aAUGCAAUCGCUGUUUCUAACCAAAua 3 22 1 27 [dm3:2L:8054484-8054510:-] 0.5461 131 0 -12.66 -0.1374 MIMAT0000347 dme-miR-283 46243 poe ucuuaauggucgacUAUAAAu |||||| uacagcauaaauuuAUAUUUa 2 8 68 88 [dm3:2L:8054423-8054443:-] 0.5461 120 6 -6.37 -0.3233 MIMAT0000392 dme-miR-9c 46243 poe agaUGUCGAUCUUAUGGUUUcu :| |:| | |||||| aucGCUGUUUCUA-ACCAAAua 3 20 7 27 [dm3:2L:8054484-8054504:-] 0.5461 121 0 -8.69 -0.1274 MIMAT0000395 dme-miR-9b 46243 poe guaUGUCGAU-UUUAGUGGUUUcu |: |||: | |||||| gcaAUCGCUGUUUCUAACCAAAua 3 21 4 27 [dm3:2L:8054484-8054507:-] 0.5461 123 0 -10.52 -0.1361 MIMAT0000407 dme-miR-315 46243 poe cgaAAGACUCGU-UGUUAGUUuu | || | || :|||||| acaUCCUAAACAUUUAAUCAAua 3 20 91 113 [dm3:2L:8054398-8054420:-] 0.5461 130 0 -6.11 -0.4453 MIMAT0000408 dme-miR-316 46243 poe gcGGUCAUUCG--CCU--UUUUCUGu ::| |:||| ||| ||||||| auUUAUUGAGCUGGGAAUAAAAGACa 2 21 151 176 [dm3:2L:8054335-8054360:-] 0.4368 154 7 -17.49 -0.9853 MIMAT0005467 dme-miR-190 46243 poe guugguucuUAUAGUUUGUAUAGa ||||: |||| ||| cauaaauuuAUAUUUAACACAUCc 2 16 73 96 [dm3:2L:8054415-8054438:-] 0.5461 131 0 -6.82 -0.1516 MIMAT0005024 dme-miR-1011 46243 poe gacgcucgcUAAACUUGGUUAUu |||| ||:||||| auccuaaacAUUU-AAUCAAUAa 2 15 93 114 [dm3:2L:8054397-8054418:-] 0.5461 140 0 -8.67 -0.1350 MIMAT0005024 dme-miR-1011 46243 poe gacgcuCGCUAAA-CUUGG-UUAUu || :||| |||| |||| gcaaucGCUGUUUCUAACCAAAUAa 2 18 4 28 [dm3:2L:8054483-8054507:-] 0.5461 120 0 -8.97 -1.1699

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score poe RAID00066605 dme-miR-970-3p miRNA MIMAT0005486 poe mRNA 46243 Prediction 0.1828 poe RAID00365459 dme-miR-190-5p miRNA MIMAT0005467 poe mRNA 46243 Prediction 0.1828 poe RAID00411054 dme-miR-283-5p miRNA MIMAT0000347 poe mRNA 46243 Prediction 0.1828 poe RAID00467491 dme-miR-316-5p miRNA MIMAT0000408 poe mRNA 46243 Prediction 0.2202 poe RAID00872999 dme-miR-315-5p miRNA MIMAT0000407 poe mRNA 46243 Prediction 0.1828 poe RAID01018408 dme-miR-252-5p miRNA MIMAT0005516 poe mRNA 46243 Prediction 0.1828 poe RAID01080229 dme-miR-1011-3p miRNA MIMAT0005024 poe mRNA 46243 Prediction 0.1828 poe RAID01151456 dme-miR-985-3p miRNA MIMAT0005502 poe mRNA 46243 Prediction 0.1828 poe RAID01384767 dme-miR-5-5p miRNA MIMAT0000110 poe mRNA 46243 Prediction 0.1828 poe RAID01734228 dme-miR-9a-5p miRNA MIMAT0000114 poe mRNA 46243 Prediction 0.1828 poe RAID02313412 dme-miR-9b-5p miRNA MIMAT0000395 poe mRNA 46243 Prediction 0.1828 poe RAID03412051 dme-miR-991-3p miRNA MIMAT0005509 poe mRNA 46243 Prediction 0.1828 poe RAID03566007 dme-miR-33-5p miRNA MIMAT0000342 poe mRNA 46243 Prediction 0.1828 poe RAID03782191 dme-miR-9c-5p miRNA MIMAT0000392 poe mRNA 46243 Prediction 0.1828 poe RAID03855230 dme-miR-994-5p miRNA MIMAT0005513 poe mRNA 46243 Prediction 0.1828