DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 39102 Uch-L3 ucagcguccgaGGUGAAUUUAUAAAu :::|| :|||||| acaauuuaaaaUUGCUGCGAUAUUUg 2 16 35 60 [dm3:3L:9468834-9468859:-] 0.6077 131 6 -9.05 -0.2032 MIMAT0011784 dme-miR-2279* 39102 Uch-L3 uuaAAGUGUGUGUCUAUAAAUu ||:||| ::| ||||||| gcaUUUACA-GUAUAUAUUUAa 2 20 1 21 [dm3:3L:9468873-9468893:-] 0.7121 161 7 -12.84 -1.3318 MIMAT0011784 dme-miR-2279* 39102 Uch-L3 uuAAAGUGU-GUG--UCUAUAAAUu ||| | | ::| |||||||: aaUUUAAAAUUGCUGCGAUAUUUGa 2 21 37 61 [dm3:3L:9468833-9468857:-] 0.6077 130 0 -8.12 -0.2733 MIMAT0011791 dme-miR-2283 39102 Uch-L3 uaacagcaUAA--GUACUAUAAAag ||| :: ||||||| aauuuaaaAUUGCUGCGAUAUUUga 3 16 37 61 [dm3:3L:9468833-9468857:-] 0.6077 126 0 -5.13 -0.2686 MIMAT0011791 dme-miR-2283 39102 Uch-L3 uaacagcauaaGUACUAUAAAag :|| |||||| -gcauuuacagUAU-AUAUUUaa 3 13 1 21 [dm3:3L:9468873-9468893:-] 0.7121 122 0 -2.29 -0.4381 MIMAT0000113 dme-miR-8 39102 Uch-L3 cuguagaaaugGACUGUCAUAau :| ||||||| --------gcaUUUACAGUAUau 3 13 1 15 [dm3:3L:9468879-9468893:-] 0.7121 128 0 -8.65 -0.1620 MIMAT0000335 dme-miR-219 39102 Uch-L3 guUCUUAACGCAAACCUGUUAGu | | || | |||||||||: uaAAAUUUCCCGUUGGACAAUUu 2 22 19 41 [dm3:3L:9468853-9468875:-] 0.7121 149 0 -15.28 -0.1184 MIMAT0000338 dme-miR-277 39102 Uch-L3 acagcauggucuaucaCGUAAAu |||||| ----------------GCAUUUa 2 8 1 7 [dm3:3L:9468887-9468893:-] 0.7121 120 6 -5.42 -0.5919 MIMAT0000347 dme-miR-283 39102 Uch-L3 ucUUAAUGGUCGACUAUAAAu ||||:|: || ||||||| aaAAUUGCU-GC-GAUAUUUg 2 20 42 60 [dm3:3L:9468834-9468852:-] 0.5033 159 7 -14.92 -0.7082 MIMAT0000347 dme-miR-283 39102 Uch-L3 ucuUAAUGGUCGACUAUAAAu ||| |||: |||||| -gcAUUUACAGUAUAUAUUUa 2 19 1 20 [dm3:3L:9468874-9468893:-] 0.7121 130 6 -8.24 -0.6352 MIMAT0000408 dme-miR-316 39102 Uch-L3 gcgGUCAUUCGCCU--UUUUCUgu |: || :| | |||||| cugCGAUAUUUGAAAUAAAAGAaa 3 20 49 72 [dm3:3L:9468822-9468845:-] 0.5033 122 0 -7.78 -0.2282 MIMAT0005520 dme-miR-1000 39102 Uch-L3 ugacgacacuguCCUGUUAua ||||||| aaauuucccguuGGACAAUuu 3 10 21 41 [dm3:3L:9468853-9468873:-] 0.7121 125 0 -8.42 -0.1195

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG31639 RAID01090072 dme-miR-1003-3p miRNA MIMAT0005016 CG31639 mRNA 318866 Prediction 0.1828 CG31639 RAID01274583 dme-miR-316-5p miRNA MIMAT0000408 CG31639 mRNA 318866 Prediction 0.1828 CG31639 RAID01355361 dme-miR-282-5p miRNA MIMAT0000346 CG31639 mRNA 318866 Prediction 0.1828 Uch-L5 RAID01390802 dme-miR-277-3p miRNA MIMAT0000338 Uch-L5 mRNA 39102 Prediction 0.2202 Uch-L5 RAID01507624 dme-miR-1000-5p miRNA MIMAT0005520 Uch-L5 mRNA 39102 Prediction 0.1828 Uch-L5 RAID02156448 dme-miR-316-5p miRNA MIMAT0000408 Uch-L5 mRNA 39102 Prediction 0.1828 Uch-L5 RAID02459195 dme-miR-8-3p miRNA MIMAT0000113 Uch-L5 mRNA 39102 Prediction 0.1828 CG31639 RAID02459599 dme-miR-1-3p miRNA MIMAT0000105 CG31639 mRNA 318866 Prediction 0.1828 Uch-L5 RAID02742818 dme-miR-219-5p miRNA MIMAT0000335 Uch-L5 mRNA 39102 Prediction 0.1828 CG31639 RAID02756195 dme-miR-1004-3p miRNA MIMAT0005017 CG31639 mRNA 318866 Prediction 0.1828 Uch-L5 RAID03586632 dme-miR-283-5p miRNA MIMAT0000347 Uch-L5 mRNA 39102 Prediction 0.1828 CG31639 RAID03773924 dme-miR-263a-5p miRNA MIMAT0000319 CG31639 mRNA 318866 Prediction 0.1828