DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005464 dme-miR-iab-4as-3p 32587 caz auUUGCAUAUGACUUACAUAgg ||| |||| | |||||| uaAACAUAUA-UAUAUGUAUac 3 21 256 276 [dm3:X:16187484-16187504:+] 0.4950 142 0 -9.98 -0.1581 MIMAT0005025 dme-miR-1012 32587 caz gauaccccuuuuaGAAACUGAUu :|||||||: cgguuaucgcucgUUUUGACUGa 2 11 171 193 [dm3:X:16187399-16187421:+] 0.5764 130 0 -11.50 -0.2131 MIMAT0005026 dme-miR-1013 32587 caz gcUCAAGC-CGUAUGAAAAUa ||| | ||| ||||||| acAGUCAGAGCA-ACUUUUAa 2 19 95 114 [dm3:X:16187323-16187342:+] 0.5385 151 7 -10.83 -1.0568 MIMAT0005026 dme-miR-1013 32587 caz gcucAAGCCGUAUGAAAAUa || ::|||||||| gcuuUUAAAUGUACUUUUAa 2 17 70 89 [dm3:X:16187298-16187317:+] 0.5385 148 7 -7.21 -1.2046 MIMAT0005026 dme-miR-1013 32587 caz gcucaagccguaUGAAAAUa ||||||| ccuauuuuuuucACUUUUAc 2 9 28 47 [dm3:X:16187256-16187275:+] 0.5385 140 7 -4.64 -0.9144 MIMAT0011791 dme-miR-2283 32587 caz uaACAGCAUAAGUACUAUAAAAg | |:| | || ||||| | cgUUUUGACUGAAUUAUAUUAUa 2 22 182 204 [dm3:X:16187410-16187432:+] 0.6143 121 0 -1.78 -0.2136 MIMAT0012201 dme-miR-2493 32587 caz ugcggAGCGUGUUUAUGUGUGCc || || | | ||||||| uuuuaUCCCA-ACACACACACGg 2 19 152 173 [dm3:X:16187380-16187401:+] 0.5385 152 7 -19.19 -0.4610 MIMAT0012201 dme-miR-2493 32587 caz ugcgGAGCGUGU-UUAUGUGUGCc || ||| ::||||:||| guaaCUGUAACAUGGUACAUACGa 2 20 231 254 [dm3:X:16187459-16187482:+] 0.6143 138 0 -16.49 -0.1320 MIMAT0012201 dme-miR-2493 32587 caz ugcggagcguguuuaUGUGUGCc :|||||| aaaugauaauugccaGCACACGa 2 9 113 135 [dm3:X:16187341-16187363:+] 0.5385 124 6 -17.14 -0.1124 MIMAT0012215 dme-miR-2500 32587 caz gacuccAGGUGUGUGUUUUAGg | :|:| | |||||| uauauaUAUAUAGAGAAAAUC- 2 17 305 325 [dm3:X:16187533-16187553:+] 0.5152 124 6 -7.84 -0.2235 MIMAT0000412 dme-miR-iab-4-5p 32587 caz aguccUAUGUAAGU-CAUAUGca |||:|| :| |||||| uaaacAUAUAUAUAUGUAUACau 3 18 256 278 [dm3:X:16187484-16187506:+] 0.4950 140 0 -9.18 -0.1232 MIMAT0000413 dme-miR-iab-4-3p 32587 caz caaUGCAUAUGACUUCCAUAUGgc || |||| | | |||||| uaaACAUAUA-UAUAUGUAUACau 3 22 256 278 [dm3:X:16187484-16187506:+] 0.4950 139 0 -9.78 -0.1269 MIMAT0005467 dme-miR-190 32587 caz guUG-GUUCUUAUAGUUUGUAUAga || :| |||| |||||||| guACAUACGAAU---AAACAUAUau 3 23 245 266 [dm3:X:16187473-16187494:+] 0.6143 137 0 -8.33 -0.2730 MIMAT0005480 dme-miR-965 32587 caz uuccCCUUUUCGAUAUGCGAAu | :|:|| ||||||| uguaGCGAGAG---UACGCUUu 2 19 56 74 [dm3:X:16187284-16187302:+] 0.5385 142 7 -12.42 -0.7773 MIMAT0005483 dme-miR-1002 32587 caz agcgGGAAACAUAGGUGAUGAAUu ::||| | |: :|||||| ccuaUUUUUUUCACUUUUACUUAu 2 21 28 51 [dm3:X:16187256-16187279:+] 0.5385 140 6 -10.59 -0.1182 MIMAT0005492 dme-miR-976 32587 caz cgUAA-CUACUAUUG-AUUAGGUu ||| || || |: |||||:| auAUUAUAUAAUUAUGUAAUCUAa 2 21 197 220 [dm3:X:16187425-16187448:+] 0.6143 138 0 -7.48 -0.1380 MIMAT0005504 dme-miR-987 32587 caz guaguuaggucugauaaAUGAAAu |||||| gaguacgcuuuuaaaugUACUUUu 2 8 64 87 [dm3:X:16187292-16187315:+] 0.5385 120 6 -7.47 -0.1407 MIMAT0005516 dme-miR-252 32587 caz gaggacgccGUGAUCAUGAAUc |||| |||||| uauuuuuuuCACUUUUACUUAu 2 14 30 51 [dm3:X:16187258-16187279:+] 0.5385 125 6 -9.64 -0.1206 MIMAT0005516 dme-miR-252 32587 caz gaggACGCCGUGAU---CAUGAAuc | || : :|| |||||| agagUACGCUUUUAAAUGUACUUuu 3 19 63 87 [dm3:X:16187291-16187315:+] 0.5385 121 0 -8.90 -0.1166 MIMAT0005027 dme-miR-1014 32587 caz gacguuuacuUUUACUUAAaa :| |||||| cgcucguuuuGACUGAAUUau 3 12 178 198 [dm3:X:16187406-16187426:+] 0.6143 123 0 -6.53 -0.1204

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score caz RAID00064961 dme-miR-iab-4-5p miRNA MIMAT0000412 caz mRNA 32587 Prediction 0.1828 caz RAID00915242 dme-miR-1002-5p miRNA MIMAT0005483 caz mRNA 32587 Prediction 0.1828 caz RAID01222338 dme-miR-976-3p miRNA MIMAT0005492 caz mRNA 32587 Prediction 0.1828 caz RAID01326631 dme-miR-1014-3p miRNA MIMAT0005027 caz mRNA 32587 Prediction 0.1828 caz RAID01732428 dme-miR-1013-3p miRNA MIMAT0005026 caz mRNA 32587 Prediction 0.1828 caz RAID01815326 dme-miR-987-5p miRNA MIMAT0005504 caz mRNA 32587 Prediction 0.1828 caz RAID01906367 dme-miR-190-5p miRNA MIMAT0005467 caz mRNA 32587 Prediction 0.1828 caz RAID02562041 dme-miR-252-5p miRNA MIMAT0005516 caz mRNA 32587 Prediction 0.1828 caz RAID02981234 dme-miR-965-3p miRNA MIMAT0005480 caz mRNA 32587 Prediction 0.2202 caz RAID03659112 dme-miR-iab-4-3p miRNA MIMAT0000413 caz mRNA 32587 Prediction 0.1828