DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43770 Ank auagUAAAGUAUA-CGU--UGCAUUUAUgu :||| | || |:| | |||||| uagaGUUUAAAAUCGUACUAAUUAAAUAaa 3 24 381 410 [dm3:4:137028-137057:-] 0.4373 133 0 -7.23 -0.1222 MIMAT0000364 dme-miR-289 43770 Ank ucagcGUCC-GAGGUGAAUUUAUAAAu |||| | ::| |:|||||| gucuaCAGGUCCUUAGCAAGAUAUUUu 2 22 9 35 [dm3:4:137460-137486:-] 0.4339 140 6 -15.89 -0.1248 MIMAT0000388 dme-miR-303 43770 Ank uggucaaaggacacuuUGGAUUu |||||| auaucuuaaauaauuuACCUAAa 2 8 248 270 [dm3:4:137168-137190:-] 0.3834 120 6 -10.32 -0.1289 MIMAT0005491 dme-miR-975 43770 Ank uaUGUCCUACAUCCUUCACAAau ||| || || |||||| aaACAAUAU-UA-ACAGUGUUau 3 22 356 376 [dm3:4:137062-137082:-] 0.4373 125 0 -4.92 -0.1045 MIMAT0005499 dme-miR-983 43770 Ank agUAAUCAAGCUUUGCAUAAUa |||| ||| ||:|||||| cuAUUA-UUC--AAUGUAUUAc 2 21 321 339 [dm3:4:137099-137117:-] 0.4373 147 6 -9.39 -0.1081 MIMAT0005500 dme-miR-984 43770 Ank uuUAAGGUUGGCAUAAAUGGAgu || ::|| : |||||||| auAUCUUAAAU-AAUUUACCUaa 3 22 248 269 [dm3:4:137169-137190:-] 0.3834 135 0 -9.97 -0.1089 MIMAT0005502 dme-miR-985 43770 Ank acGGGCUGGUAACCUUGUAAAc :|: | ||| ||||||| uuUCUAAAAAUU-UAACAUUUu 2 21 286 306 [dm3:4:137132-137152:-] 0.4103 146 7 -5.27 -1.0156 MIMAT0005502 dme-miR-985 43770 Ank acgggcugguaaccUUGUAAAc ||||||| cuaaugcaauacuuAACAUUUg 2 9 116 137 [dm3:4:137358-137379:-] 0.4026 140 7 -11.12 -0.6314 MIMAT0005521 dme-miR-1001 43770 Ank acUAGGAACCCUCAAAUGGGu |||:| | ||||||: auAUCUUAAAUAAUUUACCUa 2 20 248 268 [dm3:4:137170-137190:-] 0.3834 135 0 -10.77 -0.1328 MIMAT0005022 dme-miR-1009 43770 Ank gacUUUACAUUGUUAAA-AACUcu |||| ||||| ||| |||| uaaAAAUUUAACAUUUUCUUGAca 3 21 290 313 [dm3:4:137125-137148:-] 0.4373 128 0 -6.32 -0.1816 MIMAT0011787 dme-miR-2280* 43770 Ank agucaaucgaacCUUCAUUUAa |:||||||| gugucacuaaaaGGAGUAAAUu 2 11 90 111 [dm3:4:137384-137405:-] 0.3960 146 7 -9.72 -0.3603 MIMAT0011791 dme-miR-2283 43770 Ank uaaCAGCAUAAGUACUAUAAAAg ||| | || |||||||| cagGUCCUUAGCAAGAUAUUUUu 2 21 14 36 [dm3:4:137459-137481:-] 0.4339 160 7 -11.60 -1.1604 MIMAT0012199 dme-miR-2492 43770 Ank aaACUUUCGAGAGCUGUUUUGUa || || :|: : |:|||||| uuUGCAA-UUUAUAAUAAAACAa 2 22 340 361 [dm3:4:137077-137098:-] 0.4373 139 6 -6.18 -0.3186 MIMAT0012215 dme-miR-2500 43770 Ank gacuccAGGUGU-GUGUUUUAGg |::| | : :|||||| uuauaaUUUAGAGUUUAAAAUCg 2 17 373 395 [dm3:4:137043-137065:-] 0.4373 127 6 -5.24 -0.1410 MIMAT0012217 dme-miR-2501* 43770 Ank uuucUUUCAAACUAACGUUCUca | || | | |||||| gucuACAGGUCCUUAGCAAGAua 3 20 9 31 [dm3:4:137464-137486:-] 0.4339 127 0 -6.73 -0.6574 MIMAT0000334 dme-miR-92a 43770 Ank uauccggcccuguucACGUUAc |||||| uucaauguauuacuuUGCAAUu 2 8 327 348 [dm3:4:137090-137111:-] 0.4373 120 6 -4.18 -0.1003 MIMAT0000335 dme-miR-219 43770 Ank guucuUAACGCAAACCUGUUAGu ||| : || ||||||| uuaacAUUUUCUU--GACAAUCa 2 19 297 317 [dm3:4:137121-137141:-] 0.4373 147 7 -10.10 -1.2469 MIMAT0000346 dme-miR-282 43770 Ank ugucUGUUUCGGAUCAUC----UCCGAUCUAa ||||||:||| :| || |||| -uuuACAAAGUCUACAGGUCCUUAGCAAGAUa 2 25 1 31 [dm3:4:137464-137494:-] 0.4339 127 0 -15.76 -0.3023 MIMAT0000347 dme-miR-283 43770 Ank ucUUAAUGGUCG-ACUAUAAAu ::| ::||| ||||||| caGGUCCUUAGCAAGAUAUUUu 2 20 14 35 [dm3:4:137460-137481:-] 0.4339 146 7 -10.65 -1.1567 MIMAT0000358 dme-miR-92b 43770 Ank cguccggcccugaucACGUUAa |||||| uucaauguauuacuuUGCAAUu 2 8 327 348 [dm3:4:137090-137111:-] 0.4373 120 6 -8.12 -0.1003 MIMAT0000402 dme-miR-310 43770 Ank uuuccggcccuucacACGUUAu |||||| uucaauguauuacuuUGCAAUu 2 8 327 348 [dm3:4:137090-137111:-] 0.4373 120 6 -4.62 -0.1003 MIMAT0000403 dme-miR-311 43770 Ank aguccggccacuuacACGUUAu |||||| uucaauguauuacuuUGCAAUu 2 8 327 348 [dm3:4:137090-137111:-] 0.4373 120 6 -5.33 -0.1003 MIMAT0005466 dme-miR-955 43770 Ank cuguGA-GUUU-GGAGACGUGCUAc || ||:: |||: ||| ||| aaguCUACAGGUCCUUAGCAAGAUa 2 20 7 31 [dm3:4:137464-137488:-] 0.4339 125 0 -12.30 -0.2772 MIMAT0005472 dme-miR-375 43770 Ank auUGAAUUCGGUUUGCUUGUUu || | || |:| |||||| uuACGUUAGAAAGAAGAACAAa 2 21 142 163 [dm3:4:137332-137353:-] 0.4026 132 6 -11.39 -0.1367 MIMAT0005501 dme-miR-927 43770 Ank ccauuucgcauccuuAAGAUUu |||||| ucgauuuauuaaguuUUCUAAa 2 8 272 293 [dm3:4:137145-137166:-] 0.4103 120 6 -5.78 -0.2174 MIMAT0005504 dme-miR-987 43770 Ank guaguUAGGUCUGAUAAAUGAAAu ||:|| || ||||||| cuauuAUUCAAUGUA-UUACUUUg 2 20 321 343 [dm3:4:137095-137117:-] 0.4373 153 7 -10.93 -0.8898 MIMAT0005520 dme-miR-1000 43770 Ank ugacGACACUGUCCUGUUAUa :| | |:| |||||| caauUUAUAAUAAAACAAUAu 2 18 344 364 [dm3:4:137074-137094:-] 0.4373 121 6 -7.38 -0.1431 MIMAT0005520 dme-miR-1000 43770 Ank ugacgacacugucCUGUUAua |||||| uuaacauuuucuuGACAAUca 3 9 297 317 [dm3:4:137121-137141:-] 0.4373 120 0 -5.66 -0.1779

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ank RAID00025318 dme-miR-987-5p miRNA MIMAT0005504 Ank mRNA 43770 Prediction 0.2202 Ank RAID00106053 dme-miR-283-5p miRNA MIMAT0000347 Ank mRNA 43770 Prediction 0.1828 Ank RAID00499501 dme-miR-1000-5p miRNA MIMAT0005520 Ank mRNA 43770 Prediction 0.1828 Ank RAID00513196 dme-miR-282-5p miRNA MIMAT0000346 Ank mRNA 43770 Prediction 0.1828 Ank RAID00738985 dme-miR-252-5p miRNA MIMAT0005516 Ank mRNA 43770 Prediction 0.1828 Ank RAID00880429 dme-miR-985-3p miRNA MIMAT0005502 Ank mRNA 43770 Prediction 0.1828 Ank RAID01052688 dme-miR-306-5p miRNA MIMAT0000393 Ank mRNA 43770 Prediction 0.1828 Ank RAID01413744 dme-miR-313-3p miRNA MIMAT0000405 Ank mRNA 43770 Prediction 0.1828 Ank RAID01763988 dme-miR-955-5p miRNA MIMAT0005466 Ank mRNA 43770 Prediction 0.1828 Ank RAID01818063 dme-miR-312-3p miRNA MIMAT0000404 Ank mRNA 43770 Prediction 0.1828 Ank RAID02286575 dme-miR-311-3p miRNA MIMAT0000403 Ank mRNA 43770 Prediction 0.2202 Ank RAID02658046 dme-miR-92a-3p miRNA MIMAT0000334 Ank mRNA 43770 Prediction 0.2202 Ank RAID02678533 dme-miR-310-3p miRNA MIMAT0000402 Ank mRNA 43770 Prediction 0.2202 Ank RAID02965965 dme-miR-275-3p miRNA MIMAT0000333 Ank mRNA 43770 Prediction 0.1828 Ank RAID03116824 dme-miR-927-5p miRNA MIMAT0005501 Ank mRNA 43770 Prediction 0.2202 Ank RAID03155542 dme-miR-1002-5p miRNA MIMAT0005483 Ank mRNA 43770 Prediction 0.1828 Ank RAID03272736 dme-miR-33-5p miRNA MIMAT0000342 Ank mRNA 43770 Prediction 0.1828 Ank RAID03382500 dme-miR-4-3p miRNA MIMAT0000109 Ank mRNA 43770 Prediction 0.1828 Ank RAID03715446 dme-miR-375-3p miRNA MIMAT0005472 Ank mRNA 43770 Prediction 0.2202 Ank RAID03740698 dme-miR-92b-3p miRNA MIMAT0000358 Ank mRNA 43770 Prediction 0.2202 Ank RAID03930955 dme-miR-219-5p miRNA MIMAT0000335 Ank mRNA 43770 Prediction 0.2202