DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 42898 BRWD3 auAGUAAAGUAUACGUU-GCAUUUA-UGu |:: || |||||:|| |||||| || uaUUGAUUAAUAUGUAAGAGUAAAUCACg 2 26 84 112 [dm3:3R:20153995-20154023:+] 0.6463 144 0 -15.01 -1.0611 MIMAT0000360 dme-miR-287 42898 BRWD3 cacGUUUGCUA-AAAGUUGUgu :|| :| | |||||| aucUAAUUGCUAAAUCAACAaa 3 19 28 49 [dm3:3R:20153939-20153960:+] 0.6463 121 0 -5.95 -0.2334 MIMAT0000363 dme-miR-288 42898 BRWD3 guACUUUACUUUAGCUGUACUUu | :||| ||| : |||||| uuUAGAAU-AAAGUAUCAUGAAa 2 22 412 433 [dm3:3R:20154323-20154344:+] 0.5321 127 6 -10.86 -0.2760 MIMAT0000364 dme-miR-289 42898 BRWD3 ucagCGUCCGAG-GUGAAUUUAUAAAu |:| || :|| || |||||| auagGUACUAUCAUACAUAUAUAUUUa 2 23 348 374 [dm3:3R:20154259-20154285:+] 0.5321 129 6 -11.26 -0.1276 MIMAT0005464 dme-miR-iab-4as-3p 42898 BRWD3 auUUGCAUAUGACUUACAUAGg ||||| | | ||||||: gcAACGUUU--UAUAUGUAUUu 2 21 319 338 [dm3:3R:20154230-20154249:+] 0.6463 137 0 -12.25 -0.1475 MIMAT0005464 dme-miR-iab-4as-3p 42898 BRWD3 auuuGCAUAUGAC---UUACAUAgg || | |||| |||||| ---cCGCAGACUGUUUUAUGUAUaa 3 19 1 22 [dm3:3R:20153912-20153933:+] 0.6463 129 0 -11.83 -0.5302 MIMAT0005481 dme-miR-966 42898 BRWD3 gguGUGUCGGGUGUUGGGUGu |||| || |||||||| uccCACA--CC-CAACCCACc 2 19 155 172 [dm3:3R:20154066-20154083:+] 0.6463 153 7 -24.87 -0.1639 MIMAT0005502 dme-miR-985 42898 BRWD3 acgggcUGGUAACCUUGUAAAc ||| ||| ||||||| caacaaACCUUUGUAACAUUUg 2 17 43 64 [dm3:3R:20153954-20153975:+] 0.6463 164 7 -16.96 -1.0146 MIMAT0011784 dme-miR-2279* 42898 BRWD3 uuAAAGUGUGUGUCUAUAAAUu | |||:|||:| ||||||| acUAUCAUACAUAUAUAUUUAa 2 21 354 375 [dm3:3R:20154265-20154286:+] 0.5321 176 7 -17.29 -1.2052 MIMAT0011787 dme-miR-2280* 42898 BRWD3 agucAAUCGAACCU--UCAUUUAa ||| : || | ||||||| uugaUUAAUAUGUAAGAGUAAAUc 2 19 86 109 [dm3:3R:20153997-20154020:+] 0.6463 149 7 -5.09 -0.8948 MIMAT0012196 dme-miR-2489 42898 BRWD3 ugACGUUUAUG-UUGUAUGU-UAu | :|::||| | |||||| || uaUAUAGGUACUAUCAUACAUAUa 2 21 345 368 [dm3:3R:20154256-20154279:+] 0.5321 127 0 -13.59 -1.1910 MIMAT0012199 dme-miR-2492 42898 BRWD3 aaacUUUCG-AGAGCUGUUUUGUa ||||: || :| |||||| gaauAAAGUAUCAUG-AAAAACA- 2 20 416 437 [dm3:3R:20154327-20154348:+] 0.5321 124 6 -9.20 -0.2387 MIMAT0012209 dme-miR-2497 42898 BRWD3 gaCGUUUGUAA--CAUUUACAAca | | |::|| | |||||| caGAAUAUGUUCAAUUAAUGUUca 3 21 236 259 [dm3:3R:20154147-20154170:+] 0.6463 127 0 -6.32 -0.1199 MIMAT0000120 dme-miR-14 42898 BRWD3 auccucucucuuuuUCUGACu |||||| ----------ccgcAGACUGu 2 8 1 11 [dm3:3R:20153912-20153922:+] 0.6463 120 6 -8.29 -0.1945 MIMAT0000346 dme-miR-282 42898 BRWD3 ugucUGUUUCGGAUCA-UCU--CCGAUCUaa ||||| |:| || | | |||||| aucaACAAACCUUUGUAACAUUUGCUAGAgu 3 25 41 71 [dm3:3R:20153952-20153982:+] 0.6463 142 0 -15.78 -0.2159 MIMAT0000347 dme-miR-283 42898 BRWD3 ucuuaauggucgacUAUAAAu |||||| acuaucauacauauAUAUUUa 2 8 354 374 [dm3:3R:20154265-20154285:+] 0.5321 120 6 -4.39 -0.1276 MIMAT0000407 dme-miR-315 42898 BRWD3 cgaaAGACU--CGUUGUUAGUUuu ||| | || | |||||| uaaaUCUAAUUGCUA-AAUCAAca 3 19 25 47 [dm3:3R:20153936-20153958:+] 0.6463 127 0 -6.27 -0.2889 MIMAT0005486 dme-miR-970 42898 BRWD3 uaucGGCG-CACACAGAAUACu |||| | |||:||||| ----CCGCAGACUGUUUUAUGu 2 18 1 18 [dm3:3R:20153912-20153929:+] 0.6463 144 0 -16.69 -0.1142

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score BRWD3 RAID00651176 dme-miR-985-3p miRNA MIMAT0005502 BRWD3 mRNA 42898 Prediction 0.1828 BRWD3 RAID01473652 dme-miR-966-5p miRNA MIMAT0005481 BRWD3 mRNA 42898 Prediction 0.1828 BRWD3 RAID01565172 dme-miR-14-3p miRNA MIMAT0000120 BRWD3 mRNA 42898 Prediction 0.1828 BRWD3 RAID01942292 dme-miR-970-3p miRNA MIMAT0005486 BRWD3 mRNA 42898 Prediction 0.1828 BRWD3 RAID02028492 dme-miR-283-5p miRNA MIMAT0000347 BRWD3 mRNA 42898 Prediction 0.1828 BRWD3 RAID02227918 dme-miR-219-5p miRNA MIMAT0000335 BRWD3 mRNA 42898 Prediction 0.1828 BRWD3 RAID02878816 dme-miR-315-5p miRNA MIMAT0000407 BRWD3 mRNA 42898 Prediction 0.1828 BRWD3 RAID03863789 dme-miR-282-5p miRNA MIMAT0000346 BRWD3 mRNA 42898 Prediction 0.1828