DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 40030 not uggUCAUGGA--CUA--CAUUAUGAgu ||||::| || ||||||| cuaAGUAUUUCAAAUCCAUAAUACUaa 3 21 317 343 [dm3:3L:18611922-18611948:-] 0.5018 130 0 -9.15 -0.2667 MIMAT0012199 dme-miR-2492 40030 not aaacuUUCGAGAGCU---GUUUUGUa |||||| | | ||||||| uauucAAGCUCACAAACUCAAAACAu 2 19 202 227 [dm3:3L:18612038-18612063:-] 0.4419 157 7 -14.58 -0.3585 MIMAT0012199 dme-miR-2492 40030 not aaacuuucgagagcugUUUUGUa |||||| caaauccauaauacuaAAAACAa 2 8 327 349 [dm3:3L:18611916-18611938:-] 0.5018 120 6 -4.59 -0.4447 MIMAT0012215 dme-miR-2500 40030 not gacuccaGGUGUGUGUUUUAGg |:| | |||||||| cauaauaCUAAAAACAAAAUCa 2 16 333 354 [dm3:3L:18611911-18611932:-] 0.4532 155 7 -12.08 -1.3242 MIMAT0000332 dme-miR-274 40030 not uaaugggCAAUCACAGCCAGUGUUUu |||| | | ||||||| gauugggGUUAUUCAAGCUCACAAAc 2 20 193 218 [dm3:3L:18612047-18612072:-] 0.4419 155 7 -11.96 -0.3518 MIMAT0000332 dme-miR-274 40030 not uaaugggcaaucacagccaGUGUUUu |||||| auuacgaauuacgaauaaaCACAAAa 2 8 75 100 [dm3:3L:18612165-18612190:-] 0.5146 120 6 -14.21 -0.1588 MIMAT0000407 dme-miR-315 40030 not cgaaagacUCGUUGUUAGUUUu | ||| ||||||| auacuaaaAACAA-AAUCAAAa 2 15 337 357 [dm3:3L:18611908-18611928:-] 0.4532 148 7 -8.29 -1.3059 MIMAT0005472 dme-miR-375 40030 not auUGAAUUCGGU----UUGCUUGUUu ||| || || ||||||||| aaACUCAAAACAUUGGAACGAACAAu 2 21 215 240 [dm3:3L:18612025-18612050:-] 0.4419 155 7 -14.17 -0.5459 MIMAT0005474 dme-miR-960 40030 not cgAUACGUUAGACCUUAUGAgu | | |||| |||||| uaUUUCAAAUCCAUAAUACUaa 3 21 322 343 [dm3:3L:18611922-18611943:-] 0.5018 132 0 -6.33 -0.2575 MIMAT0005507 dme-miR-137 40030 not gaugcacauaagagUUCGUUAu ||||||| uaacacaaacacgaAAGCAAUc 2 9 142 163 [dm3:3L:18612102-18612123:-] 0.4742 140 7 -8.05 -0.5531

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score not RAID00065177 dme-miR-317-3p miRNA MIMAT0000409 not mRNA 40030 Prediction 0.1828 not RAID00949384 dme-miR-315-5p miRNA MIMAT0000407 not mRNA 40030 Prediction 0.2202 not RAID01960216 dme-miR-960-5p miRNA MIMAT0005474 not mRNA 40030 Prediction 0.1828 not RAID02564158 dme-miR-137-3p miRNA MIMAT0005507 not mRNA 40030 Prediction 0.2202 not RAID03648593 dme-miR-33-5p miRNA MIMAT0000342 not mRNA 40030 Prediction 0.1828 not RAID03770559 dme-miR-274-5p miRNA MIMAT0000332 not mRNA 40030 Prediction 0.2202 not RAID04053420 dme-miR-375-3p miRNA MIMAT0005472 not mRNA 40030 Prediction 0.2202